Clone Sequence Records
BS05293.complete Sequence
2648 bp assembled on 2009-12-07
GenBank Submission: KX795338
> BS05293.complete
GAAGTTATCAGTCGACATGCACCTCAGCGCGGATATTTCCAGCGCCCTTC
AGCAGATCGAGGCAGTGAAGAAGGGCATCGATGAGTCCGACGACCCCAAG
CTGCAAATGCAGACGGCCGAGAGCCTTAGCACCATTCTGGGCATTCTGCA
GGATCCCGTTTTCCGCACCATCGTCCACGTGCAGGACTCGTTGTCCGAGC
TGAACGCCCAGCTGGCTCAGCATCCGTCCATGTTGCCCAACGACTTCGAC
ATCGATGTGGCCGGCAACCTTGTACTCAGTCTGAATGGTGGCGAGGTGAT
GTACGACTTTGACGAACAGCGCTCTTCCTCGCACTCCCATTCGGCTCCGG
GCAGTCCAGATAAGTCCGGAGGCGTCGGCGAGGAGCCGCGCCCGCAGAGC
CAGAACTCCAAAGGAGCCGGAGTGGCGGATCTCTACGCCACGGACTACGC
TCAGATCCAGGCCATAGAGCTGGTCAACGACGGCACGGGTCTCGGATTCG
GTATTATTGGAGCTCGCAACTCGGGAGTGATTGTAAAAACCATCCTGCCG
GGTGGCGTGGCCGATAAGGACGGACGCTTGCGCTCGGGCGACCACATCCT
CCAGATTGGAGACGTCAACCTGCACGAAATGGTATCCGAACAGGTGGCTG
CCGTGCTGAGACAGTCTGGAACCCACGTCCGCCTAGTGGTTGCCCGTCCC
GTTGAGCAGAGCGTGCCTACGCCCCAGTACGCCCTGGAACCGGGCACTGC
TGTGGTGCCCACGCGCGTCCTCGTCGATCCTGCCGAGCTGGAGCGGTACC
TCATATCTACCGGCTATCCGGAAATCTTTGGCGAGAGCTCCACGGCCTCC
ACTCCGCAGACCACCACGGAAGACGATCGTTTCGTTTATCGCGGCGAGAC
ATCAATGCTTATTGATCCAAACATCGACCTAGAGGAATTGCTTGCCCTTC
CTGAAACGGAGAAGCTTCAGGTGGAGCTGAAGAAGGATGCCAACGGCCTG
GGCATCACAATTGCCGGCTATGTGTGTGAGAAAGAAGAGCTGTCTGGCAT
TTTCGTAAAGAGCGTGTCGCCCGGTTCAGCAGCGGACCTGAGTGGTCGCA
TCCGGGTCAACGATCGCATCATTGAAGTTGACGGCCAGTCGCTACAAGGC
TACTCCAACCACCAGGCCGTAGAGCTGCTTAAGAAGTCTGGTCAGGTGGT
GAACCTGCGCTTGGAACGCTACCTGAGGGGCCCCAAATTCGAGCAGCTGC
AGCAGGCTATCGCTGCGAATGACAAGCTTCCATCCAGTGCACCTGGAACG
CCTTCAAGGGCTCCCATGCCCACGCCCGTGGCCACAACGTCCTCCGCCAC
AACTACACCATCACGCAGCATCACTCGCGAGTTGGAAGAGGAAGCCTTAC
CAGCGCCAGAAGCATTCATGACCACTCCGCCGTCGGTCACCACAATGACC
ACCACCACATTAAGCTCCTTTGGAGCGGGTAAGCAACTAGTAGCAGTAAG
GGACTCCCTAGACGGCTCCACGAAGATCATACCCACGGAAGTTGTACCCT
TGGCGGATAAAACGGAGGCCAAGAACAGCGGGGTGATCACCCGTCACAAG
TACTACACCGATCCGGAACTGTCCGACGACGCCGAAACCGAAATTATTCG
CAAATGGCAGAAGATTGTGGGCTCCGATGTGGAGGTGATTGTGGCCCAGA
TCAAGAAGTTCGCGGTCGGAGGCTTGGGGATTTCCTTGGAGGGAACCGTG
GACGTAGAAGGAGGGCGCGAGGTACGACCCCATCACTATATTCGTTCAAT
CTTACCTGATGGACCCGTTGGCGTGAATGGAGTACTCCGCTCTGGCGATG
AATTGCTGGAGGTAAACGGCGAGCGGTTGCTGGGTATGAACCACCTGGAG
GTGGTGGCTATACTTAAGGAACTGCCGTTGGATGTGCGCATGGTTTGCGG
TCGCAACAGGAACAGCTCGCTTCTCCCATTCTCTGATGACACCCTGAAAA
AGCTAAGCAACAACTTTGAGAACCTGCTGCCTGCTACCGATCGTCTGGTG
AAGGCCAAATCAGATGGTAGTCTGGCCACCGCGGGCTCCGTGGCCGATGG
AGATTCAGTGGCTGCCGCCGCTGCTTCGTTTAGTAAGCTGAAGTCGCGCT
CCCTGGAGCCACTAACCGGATTGGCTATGTGGTCGTCCCAACCGCAAATT
ATCGAGCTGGTCAAGGGCGATCGCGGTCTGGGCTTCTCTATTCTGGATTA
TCAAGATCCGTTGGATCCCAACGATACGCTGATTGTAATCCGTTCTCTGG
TCCCTGGAGGGGTGGCTCAATTGGACGGACGCCTTATACCCGGAGATCGA
CTTTTGTTTGTGAACTCCATTAACCTGGAGAACGCCTCGCTGGATCAGGC
AGTGCAGGCTTTGAAGGGTGCTTCGAAAGGAGTGGTGCGCATTGGTGTGG
CCAAACCACTGCCCATGACGGACAACTCACTGAAGGCTTGCAGCAATGCG
AGCACCACCAGCGAAGAGACCTTGGACGCCCAGCCATCGCCTCCAGCCTT
GCCCACAGTTGCTCCGCCCGCCATGCCGCCTAGTGCCTCCATGGGAGCTG
AGCCCGACCTGATTCCCGACTGGCGGAACTAGAAGCTTTCTAGACCAT
BS05293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 2616 | CG12021-PB | 1..2616 | 17..2632 | 13080 | 100 | Plus |
| Patj-RA | 2616 | CG12021-PA | 1..2616 | 17..2632 | 13080 | 100 | Plus |
| Patj-RC | 2616 | CG12021-PC | 1..2616 | 17..2632 | 13080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 3236 | CG12021-RB | 261..2876 | 17..2632 | 13080 | 100 | Plus |
| Patj-RA | 3264 | CG12021-RA | 289..2904 | 17..2632 | 13080 | 100 | Plus |
| Patj-RC | 3266 | CG12021-RC | 291..2906 | 17..2632 | 13080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1799149..1800700 | 17..1568 | 7760 | 100 | Plus |
| 3L | 28110227 | 3L | 1800758..1801824 | 1566..2632 | 5335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:04:23 has no hits.
BS05293.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:15 Download gff for
BS05293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RB | 255..2870 | 17..2632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:10 Download gff for
BS05293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 291..2906 | 17..2632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:34 Download gff for
BS05293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RB | 255..2870 | 17..2632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:24 Download gff for
BS05293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 291..2906 | 17..2632 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:24 Download gff for
BS05293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1799149..1800699 | 17..1567 | 100 | -> | Plus |
| 3L | 1800760..1801824 | 1568..2632 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:10 Download gff for
BS05293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1799149..1800699 | 17..1567 | 100 | -> | Plus |
| arm_3L | 1800760..1801824 | 1568..2632 | 100 | | Plus |
BS05293.3prime Sequence
886 bp (831 high quality bases) assembled on 2005-12-02
> BS05293.3prime
ATGGTCTAGAAAGCTTCTAGTTCCGCCAGTCGGGAATCAGGTCGGGCTCA
GCTCCCATGGAGGCACTAGGCGGCATGGCGGGCGGAGCAACTGTGGGCAA
GGCTGGAGGCGATGGCTGGGCGTCCAAGGTCTCTTCGCTGGTGGTGCTCG
CATTGCTGCAAGCCTTCAGTGAGTTGTCCGTCATGGGCAGTGGTTTGGCC
ACACCAATGCGCACCACTCCTTTCGAAGCACCCTTCAAAGCCTGCACTGC
CTGATCCAGCGAGGCGTTCTCCAGGTTAATGGAGTTCACAAACAAAAGTC
GATCTCCGGGTATAAGGCGTCCGTCCAATTGAGCCACCCCTCCAGGGACC
AGAGAACGGATTACAATCAGCGTATCGTTGGGATCCAACGGATCTTGATA
ATCCAGAATAGAGAAGCCCAGACCGCGATCGCCCTTGACCAGCTCGATAA
TTTGCGGTTGGGACGACCACATAGCCAATCCGGTTAGTGGCTCCAGGGAG
CGCGACTTCAGCTTACTAAACGAAGCAGCGGCGGCAGCCACTGAATCTCC
ATCGGCCACGGAGCCCGCGGTGGCCAGACTACCATCTGATTTGGCCTTCA
CCAGACGATCGGTAGCAGGCAGCAGGTTCTCAAAGTTGTTGCTTAGCTTT
TTCAGGGTGTCATCAGAGAATGGGAGAAGCGAGCTGTTCCTGTTGCGACC
GCAAACCATGCGCACATCCAACGGCAGTTCCTTAAGTATAGCCACCACCT
CCAGGTGGTTCATACCCAGCAACCGCTCGCCGTTTACCTCCAGCAATTCA
TCGCCAGAGCGGAGTACTCCATTCACGCCAACGGGTCCATCAGGTAAGAT
TGAACGAATATAGTGATGGGGTCGTACCTCGCGCCC
BS05293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12021-PC | 2616 | Patj-RC | 1747..2616 | 886..17 | 4350 | 100 | Minus |
| CG12021-PA | 2616 | Patj-RA | 1747..2616 | 886..17 | 4350 | 100 | Minus |
| CG12021-PB | 2616 | Patj-RB | 1747..2616 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 3236 | CG12021-RB | 2007..2876 | 886..17 | 4350 | 100 | Minus |
| Patj-RA | 3264 | CG12021-RA | 2035..2904 | 886..17 | 4350 | 100 | Minus |
| Patj-RC | 3266 | CG12021-RC | 2037..2906 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1800955..1801824 | 886..17 | 4350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:15:35 has no hits.
BS05293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:15 Download gff for
BS05293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-PA | 1747..2616 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:27 Download gff for
BS05293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12021-PB | 1747..2616 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:50 Download gff for
BS05293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 2037..2906 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:45 Download gff for
BS05293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 2037..2906 | 17..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:45 Download gff for
BS05293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1800955..1801824 | 17..886 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:50 Download gff for
BS05293.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1800955..1801824 | 17..886 | 100 | | Minus |
BS05293.5prime Sequence
857 bp (818 high quality bases) assembled on 2005-12-02
> BS05293.5prime
GAAGTTATCAGTCGACATGCACCTCAGCGCGGATATTTCCAGCGCCCTTC
AGCAGATCGAGGCAGTGAAGAAGGGCATCGATGAGTCCGACGACCCCAAG
CTGCAAATGCAGACGGCCGAGAGCCTTAGCACCATTCTGGGCATTCTGCA
GGATCCCGTTTTCCGCACCATCGTCCACGTGCAGGACTCGTTGTCCGAGC
TGAACGCCCAGCTGGCTCAGCATCCGTCCATGTTGCCCAACGACTTCGAC
ATCGATGTGGCCGGCAACCTTGTACTCAGTCTGAATGGTGGCGAGGTGAT
GTACGACTTTGACGAACAGCGCTCTTCCTCGCACTCCCATTCGGCTCCGG
GCAGTCCAGATAAGTCCGGAGGCGTCGGCGAGGAGCCGCGCCCGCAGAGC
CAGAACTCCAAAGGAGCCGGAGTGGCGGATCTCTACGCCACGGACTACGC
TCAGATCCAGGCCATAGAGCTGGTCAACGACGGCACGGGTCTCGGATTCG
GTATTATTGGAGCTCGCAACTCGGGAGTGATTGTAAAAACCATCCTGCCG
GGTGGCGTGGCCGATAAGGACGGACGCTTGCGCTCGGGCGACCACATCCT
CCAGATTGGAGACGTCAACCTGCACGAAATGGTATCCGAACAGGTGGCTG
CCGTGCTGAGACAGTCTGGAACCCACGTCCGCCTAGTGGTTGCCCGTCCC
GTTGAGCAGAGCGTGCCTACGCCCCAGTACGCCCTGGAACCGGGCACTGC
TGTGGTGCCCACGCGCGTCCTCGTCGATCCTGCCGAGCTGGAGCGGTACC
TCATATCTACCGGCTATCCGGAAATCTTTGGCGAGAGCTCCACGGCCTCC
ACTCCGC
BS05293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12021-PC | 2616 | Patj-RC | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG12021-PA | 2616 | Patj-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG12021-PB | 2616 | Patj-RB | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 3236 | CG12021-RB | 261..1101 | 17..857 | 4205 | 100 | Plus |
| Patj-RA | 3264 | CG12021-RA | 289..1129 | 17..857 | 4205 | 100 | Plus |
| Patj-RC | 3266 | CG12021-RC | 291..1131 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1799149..1799989 | 17..857 | 4205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:16:44 has no hits.
BS05293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:16 Download gff for
BS05293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:28 Download gff for
BS05293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12021-PB | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:42:18 Download gff for
BS05293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 291..1131 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:11 Download gff for
BS05293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 291..1131 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:11 Download gff for
BS05293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1799149..1799989 | 17..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:42:18 Download gff for
BS05293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1799149..1799989 | 17..857 | 100 | | Plus |
BS05293.pep Sequence
Translation from 16 to 2631
> BS05293.pep
MHLSADISSALQQIEAVKKGIDESDDPKLQMQTAESLSTILGILQDPVFR
TIVHVQDSLSELNAQLAQHPSMLPNDFDIDVAGNLVLSLNGGEVMYDFDE
QRSSSHSHSAPGSPDKSGGVGEEPRPQSQNSKGAGVADLYATDYAQIQAI
ELVNDGTGLGFGIIGARNSGVIVKTILPGGVADKDGRLRSGDHILQIGDV
NLHEMVSEQVAAVLRQSGTHVRLVVARPVEQSVPTPQYALEPGTAVVPTR
VLVDPAELERYLISTGYPEIFGESSTASTPQTTTEDDRFVYRGETSMLID
PNIDLEELLALPETEKLQVELKKDANGLGITIAGYVCEKEELSGIFVKSV
SPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVVNLRLE
RYLRGPKFEQLQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTPSR
SITRELEEEALPAPEAFMTTPPSVTTMTTTTLSSFGAGKQLVAVRDSLDG
STKIIPTEVVPLADKTEAKNSGVITRHKYYTDPELSDDAETEIIRKWQKI
VGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPHHYIRSILPDGP
VGVNGVLRSGDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRNRNS
SLLPFSDDTLKKLSNNFENLLPATDRLVKAKSDGSLATAGSVADGDSVAA
AAASFSKLKSRSLEPLTGLAMWSSQPQIIELVKGDRGLGFSILDYQDPLD
PNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLENASLDQAVQALK
GASKGVVRIGVAKPLPMTDNSLKACSNASTTSEETLDAQPSPPALPTVAP
PAMPPSASMGAEPDLIPDWRN*
BS05293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-PB | 871 | CG12021-PB | 1..871 | 1..871 | 4380 | 100 | Plus |
| Patj-PA | 871 | CG12021-PA | 1..871 | 1..871 | 4380 | 100 | Plus |
| Patj-PC | 871 | CG12021-PC | 1..871 | 1..871 | 4380 | 100 | Plus |
| CG15803-PC | 880 | CG15803-PC | 304..865 | 312..821 | 846 | 38.7 | Plus |
| CG15803-PB | 878 | CG15803-PB | 304..863 | 312..821 | 834 | 38.6 | Plus |
| CG15803-PC | 880 | CG15803-PC | 4..124 | 141..262 | 344 | 53.3 | Plus |
