Clone Sequence Records
BS05296.3prime Sequence
876 bp (789 high quality bases) assembled on 2005-12-02
> BS05296.3prime
ATGGTCTAGAAAGCTTTTACAAAAAGTACAATTGATTCTGCAGTCCTGCT
GAAGGCGCACGATTAATGGATTCGGCTACGAGGAAAGCCAATTTGTGGGC
GTAATGGCAGACAGCGGGGACTCGTATGGTTCCGCTGTAATTGTAGTACA
TATGGGTCATCTTATAGGAGAGCATCTGCAGCTTATCGGCGTTTAGTCCC
ATGTTGTCAGAAATAACATTGTAGCTGGTAGGCGACACAGTTCCTATCCG
AACAGCCTGGGACACTAGGAAGAAGTCGTAGCGCTCTGGCAAGGTAATAA
CGTCATCGACTACAGTGCCCGGAACTGGGTTGCGATGCCCAGTAAAGTAG
CGAGAATTAATGCGCTTGGATACAATTATAAATGTCATGCGACAGCCCTC
CTGTTTGCCAGCTGATTTGTAAATTTCGTCGAGCCTGTCCTTTAGGGTGT
TCACCTCGCTGTTTACCACCTGGTAGAGCTGACCATCGCCAACACCGTCG
CGAAAGAAGAGAATGCGCTCTGGCAAAGAACGGTGTTGCTCCTGATACGA
CCTCAGGGCGCACGCCATGTTCACCGACATCTGCTCGGACAACTCTTGGC
CCTTAATGTGTTCGTTTACGGTGGAGAAGTAGCGGAAAGACTCCTTCTGG
TCCATGGTTGCAACGAAAGCCCCATATGACTTGTTCTTATTCTTCGGTGA
ATGGCAGACATCGAAACCAACAGTCATCAGACCGTGGAGGGGGATCACTA
CCTGCCAGGGAGCTCCCATCAATTTGGCGTTCATTTGAATAACCACCTTT
GTGGCGATCGACATCAGCCCAGTTGGTTTTTGCTGTCGAGGCGCGATAAC
TTTTAGTGTCACCACCTGCGATGGCA
BS05296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6137-PA | 2601 | aub-RA | 1742..2601 | 876..17 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aub-RC | 2808 | CG6137-RC | 1836..2697 | 876..15 | 4310 | 100 | Minus |
| aub-RA | 2825 | CG6137-RA | 1853..2714 | 876..15 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10997930..10998791 | 15..876 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:55:09 has no hits.
BS05296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:17 Download gff for
BS05296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-PA | 1743..2601 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:30 Download gff for
BS05296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6137-PA | 1743..2601 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:12:44 Download gff for
BS05296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 1854..2716 | 12..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:43 Download gff for
BS05296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 1854..2716 | 12..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:43 Download gff for
BS05296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10997928..10998790 | 12..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:12:44 Download gff for
BS05296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10997928..10998790 | 12..875 | 99 | | Plus |
BS05296.5prime Sequence
870 bp (729 high quality bases) assembled on 2005-12-02
> BS05296.5prime
GAAGTTATCAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTG
GACGTGGTCGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTC
GCTCCTTCGCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCA
AGCATCCGGAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGA
TAGAGAAATCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGAT
CCGCGTGGCTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTC
ACGTCCTCCAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTA
CCGTGCAGGCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATC
TACCAGTACCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCG
ACGGTCTTTCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTG
ACGGAACCAATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGC
CCCTATGTTTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGA
AATTAAGATCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGT
TTCAGGTCCTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTG
AAGCTGGTCTCGCGCTACTACTACGATCCTCAAGCTAAGATTAATTTGGA
GAATTTCCGCATGCAATTATGGCCTGGCTATCAGACTTCGATTCGCCAGC
ACGAAAATGATATATTACTTTGTTTCGAGATATGCCACAAGGTTATGCGA
ACTGAGACCTTGTACAATAT
BS05296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6137-PA | 2601 | aub-RA | 1..854 | 17..870 | 4245 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aub-RA | 2825 | CG6137-RA | 112..965 | 17..870 | 4255 | 99.9 | Plus |
| aub-RC | 2808 | CG6137-RC | 184..948 | 106..870 | 3795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11000165..11000659 | 739..245 | 2475 | 100 | Minus |
| 2L | 23513712 | 2L | 11000785..11000925 | 246..106 | 690 | 99.3 | Minus |
| 2L | 23513712 | 2L | 10999976..11000108 | 870..738 | 650 | 99.2 | Minus |
| 2L | 23513712 | 2L | 11001269..11001365 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:56:16 has no hits.
BS05296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:18 Download gff for
BS05296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:31 Download gff for
BS05296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6137-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:34:22 Download gff for
BS05296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 106..965 | 11..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:52 Download gff for
BS05296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 106..965 | 11..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:52 Download gff for
BS05296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10999976..11000106 | 740..870 | 99 | <- | Minus |
| 2L | 11000165..11000658 | 246..739 | 100 | <- | Minus |
| 2L | 11000786..11000918 | 113..245 | 100 | <- | Minus |
| 2L | 11001270..11001371 | 11..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:34:22 Download gff for
BS05296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11001270..11001371 | 11..112 | 96 | | Minus |
| arm_2L | 10999976..11000106 | 740..870 | 99 | <- | Minus |
| arm_2L | 11000165..11000658 | 246..739 | 100 | <- | Minus |
| arm_2L | 11000786..11000918 | 113..245 | 100 | <- | Minus |
BS05296.complete Sequence
2633 bp assembled on 2009-08-24
GenBank Submission: KX798302
> BS05296.complete
GAAGTTATCAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTG
GACGTGGTCGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTC
GCTCCTTCGCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCA
AGCATCCGGAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGA
TAGAGAAATCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGAT
CCGCGTGGCTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTC
ACGTCCTCCAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTA
CCGTGCAGGCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATC
TACCAGTACCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCG
ACGGTCTTTCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTG
ACGGAACCAATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGC
CCCTATGTTTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGA
AATTAAGATCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGT
TTCAGGTCCTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTG
AAGCTGGTCTCGCGCTACTACTACGATCCTCAAGCTAAGATTAATTTGGA
GAATTTCCGCATGCAATTATGGCCTGGCTATCAGACTTCGATTCGCCAGC
ACGAAAATGATATATTACTTTGTTCCGAGATATGCCACAAGGTTATGCGA
ACTGAGACCTTGTACAATATTTTGTCCGATGCTATTCGCGACAGTGACGA
TTATCAAAGTACATTTAAGCGTGCAGTAATGGGTATGGTAATACTAACGG
ATTATAATAACAAAACCTATCGCATTGACGATGTCGACTTTCAATCGACG
CCATTGTGCAAATTTAAAACCAATGACGGTGAGATTTCGTACGTGGATTA
CTATAAGAAGCGATACAACATAATCATTCGCGACTTGAAGCAACCTCTGG
TCATGTCTCGTCCGACAGACAAAAATATTCGTGGTGGAAATGACCAGGCC
ATAATGATCATTCCCGAGCTGGCACGGGCTACGGGAATGACGGACGCTAT
GCGCGCTGACTTTAGGACGTTGAGGGCCATGAGTGAACATACCAGGCTGA
ATCCAGATCGTCGCATCGAACGCCTTCGCATGTTCAACAAGCGCTTAAAG
TCGTGTAAACAGAGTGTAGAGACCCTTAAGTCCTGGAACATCGAGCTGGA
CTCCGCCTTGGTGGAGATTCCAGCACGCGTGTTGCCACCGGAAAAAATAT
TATTCGGCAACCAAAAAATATTCGTATGCGACGCTCGCGCCGATTGGACC
AATGAGTTTCGCACCTGTTCGATGTTTAAAAACGTGCATATCAATAGGTG
GTATGTGATCACACCGAGTCGAAATCTGCGCGAGACCCAGGAATTTGTGC
AGATGTGCATCCGCACAGCCAGCAGCATGAAGATGAACATCTGCAATCCA
ATATATGAGGAAATTCCGGATGACCGCAACGGCACTTACTCCCAAGCGAT
CGACAACGCCGCAGCTAACGATCCACAGATCGTGATGGTTGTCATGAGAT
CTCCAAATGAAGAGAAATATAGCTGCATTAAAAAACGCACGTGCGTGGAC
AGACCGGTGCCATCGCAGGTGGTGACACTAAAAGTTATCGCGCCTCGACA
GCAAAAACCAACTGGGCTGATGTCGATCGCCACAAAGGTGGTTATTCAAA
TGAACGCCAAATTGATGGGAGCTCCCTGGCAGGTAGTGATCCCCCTCCAC
GGTCTGATGACTGTTGGTTTCGATGTCTGCCATTCACCGAAGAATAAGAA
CAAGTCATATGGGGCTTTCGTTGCAACCATGGACCAGAAGGAGTCTTTCC
GCTACTTCTCCACCGTAAACGAACACATTAAGGGCCAAGAGTTGTCCGAG
CAGATGTCGGTGAACATGGCGTGCGCCCTGAGGTCGTATCAGGAGCAACA
CCGTTCTTTGCCAGAGCGCATTCTCTTCTTTCGCGACGGTGTTGGCGATG
GTCAGCTCTACCAGGTGGTAAACAGCGAGGTGAACACCCTAAAGGACAGG
CTCGACGAAATTTACAAATCAGCTGGCAAACAGGAGGGCTGTCGCATGAC
ATTTATAATTGTATCCAAGCGCATTAATTCTCGCTACTTTACTGGGCATC
GCAACCCAGTTCCGGGCACTGTAGTCGATGACGTTATTACCTTGCCAGAG
CGCTACGACTTCTTCCTAGTGTCCCAGGCTGTTCGGATAGGAACTGTGTC
GCCTACCAGCTACAATGTTATTTCTGACAACATGGGACTAAACGCCGATA
AGCTGCAGATGCTCTCCTATAAGATGACCCATATGTACTACAATTACAGC
GGAACCATACGAGTCCCCGCTGTCTGCCATTACGCCCACAAATTGGCTTT
CCTCGTAGCCGAATCCATTAATCGTGCGCCTTCAGCAGGACTGCAGAATC
AATTGTACTTTTTGTAAAAGCTTTCTAGACCAT
BS05296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aub-RA | 2601 | CG6137-PA | 1..2601 | 17..2617 | 13005 | 100 | Plus |
| aub-RC | 2388 | CG6137-PC | 1..2388 | 230..2617 | 11940 | 100 | Plus |
| piwi-RB | 2532 | CG6122-PB | 698..788 | 768..858 | 185 | 80.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aub-RA | 2825 | CG6137-RA | 112..2714 | 17..2619 | 13015 | 100 | Plus |
| aub-RC | 2808 | CG6137-RC | 184..2697 | 106..2619 | 12555 | 100 | Plus |
| piwi-RB | 2969 | CG6122-RB | 786..876 | 768..858 | 185 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10997930..10998832 | 2619..1717 | 4515 | 100 | Minus |
| 2L | 23513712 | 2L | 11000165..11000659 | 739..245 | 2475 | 100 | Minus |
| 2L | 23513712 | 2L | 10999061..10999452 | 1605..1214 | 1960 | 100 | Minus |
| 2L | 23513712 | 2L | 10999912..11000108 | 934..738 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 10999517..10999674 | 1216..1059 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 11000785..11000925 | 246..106 | 690 | 99.3 | Minus |
| 2L | 23513712 | 2L | 10999727..10999855 | 1060..932 | 645 | 100 | Minus |
| 2L | 23513712 | 2L | 10998897..10999007 | 1716..1606 | 555 | 100 | Minus |
| 2L | 23513712 | 2L | 11001269..11001365 | 113..17 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 10985369..10985459 | 858..768 | 185 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:30:36 has no hits.
BS05296.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:20 Download gff for
BS05296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 125..2723 | 17..2615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:41 Download gff for
BS05296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 112..2710 | 17..2615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:19 Download gff for
BS05296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aub-RA | 112..2710 | 17..2615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:19 Download gff for
BS05296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10997934..10998832 | 1717..2615 | 100 | <- | Minus |
| 2L | 10998897..10999007 | 1606..1716 | 100 | <- | Minus |
| 2L | 10999061..10999450 | 1216..1605 | 100 | <- | Minus |
| 2L | 10999518..10999672 | 1061..1215 | 100 | <- | Minus |
| 2L | 10999727..10999854 | 933..1060 | 100 | <- | Minus |
| 2L | 10999914..11000106 | 740..932 | 100 | <- | Minus |
| 2L | 11000165..11000658 | 246..739 | 100 | <- | Minus |
| 2L | 11000786..11000918 | 113..245 | 100 | <- | Minus |
| 2L | 11001270..11001365 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:41 Download gff for
BS05296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10998897..10999007 | 1606..1716 | 100 | <- | Minus |
| arm_2L | 10997934..10998832 | 1717..2615 | 100 | <- | Minus |
| arm_2L | 10999061..10999450 | 1216..1605 | 100 | <- | Minus |
| arm_2L | 10999518..10999672 | 1061..1215 | 100 | <- | Minus |
| arm_2L | 10999727..10999854 | 933..1060 | 100 | <- | Minus |
| arm_2L | 10999914..11000106 | 740..932 | 100 | <- | Minus |
| arm_2L | 11000165..11000658 | 246..739 | 100 | <- | Minus |
| arm_2L | 11000786..11000918 | 113..245 | 100 | <- | Minus |
| arm_2L | 11001270..11001365 | 17..112 | 100 | | Minus |
BS05296.pep Sequence
Translation from 16 to 2616
> BS05296.pep
MNLPPNPVIARGRGRGRKPNNVEANRGFAPSLGQKSDPSHSEGNQASGGN
GGGGDAQVGPSIEKSSLSAVQMHKSEGDPRGSVRGRRLITDLVYSRPPGM
TSKKGVVGTHITVQANYFKVLKRPNWTIYQYRVDFTPDVEATRLRRSFLY
EHKGILGGYIFDGTNMFCINQFKAVQDSPYVLELVTKSRAGENIEIKIKA
VGSVQSTDAEQFQVLNLILRRAMEGLDLKLVSRYYYDPQAKINLENFRMQ
LWPGYQTSIRQHENDILLCSEICHKVMRTETLYNILSDAIRDSDDYQSTF
KRAVMGMVILTDYNNKTYRIDDVDFQSTPLCKFKTNDGEISYVDYYKKRY
NIIIRDLKQPLVMSRPTDKNIRGGNDQAIMIIPELARATGMTDAMRADFR
TLRAMSEHTRLNPDRRIERLRMFNKRLKSCKQSVETLKSWNIELDSALVE
IPARVLPPEKILFGNQKIFVCDARADWTNEFRTCSMFKNVHINRWYVITP
SRNLRETQEFVQMCIRTASSMKMNICNPIYEEIPDDRNGTYSQAIDNAAA
NDPQIVMVVMRSPNEEKYSCIKKRTCVDRPVPSQVVTLKVIAPRQQKPTG
LMSIATKVVIQMNAKLMGAPWQVVIPLHGLMTVGFDVCHSPKNKNKSYGA
FVATMDQKESFRYFSTVNEHIKGQELSEQMSVNMACALRSYQEQHRSLPE
RILFFRDGVGDGQLYQVVNSEVNTLKDRLDEIYKSAGKQEGCRMTFIIVS
KRINSRYFTGHRNPVPGTVVDDVITLPERYDFFLVSQAVRIGTVSPTSYN
VISDNMGLNADKLQMLSYKMTHMYYNYSGTIRVPAVCHYAHKLAFLVAES
INRAPSAGLQNQLYFL*
BS05296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aub-PA | 866 | CG6137-PA | 1..866 | 1..866 | 4522 | 100 | Plus |
| aub-PC | 795 | CG6137-PC | 1..795 | 72..866 | 4151 | 100 | Plus |
| piwi-PB | 843 | CG6122-PB | 12..843 | 38..866 | 1773 | 43.3 | Plus |
| piwi-PA | 843 | CG6122-PA | 12..843 | 38..866 | 1773 | 43.3 | Plus |
| AGO3-PF | 867 | CG40300-PF | 122..867 | 105..866 | 1155 | 32.5 | Plus |
