Clone Sequence Records
BS05308.3prime Sequence
893 bp (869 high quality bases) assembled on 2005-12-02
> BS05308.3prime
ATGGTCTAGAAAGCTTCTACATGAGTATCAGAGCAATCTCCTCCGGCTGC
ATCGATGGACAGCGCCAATTGTAGAGGTAGTACTGCAGGTTTCCATCCCC
GGCTCCGAATTTTAGCGGTGCAAAGTACTTCTTGTTCTCCATGAGGTCGA
GGGCATTGTACACGTCCATCTGGACATTGCGGGCCGAGATCAGTGCATCG
TTCATCAGGTCCAGCCACGGGGTCTTTGTAGACACATTATAGAACGAATA
TGCGGCACGAACCGTCTTATGCACCGGATGGTGCATCACGGACGATGGCA
GGCAGTAGTAGCTAGTCAGATCAGTGATGTTGCCCTTTTCGTCGGCAACC
ACGAAGCAATCAATAATACCTTCTTTGGGGGTAAACCAATGACGAAACTC
CTCCTTGCTGAACACCGGGCTCAGCTGAAAGCGCTTTAGGTAGTCCTCCA
GCAGCTTGTGGGCCTTGTCCATGTCCTTCGCTGTGATTCGGCGATAGCCC
TTTGTCTTGGGCTGATCGGGTAGCTTGTACAGCTTCATTGTCCGCTGCAT
GGTCATGTTACGTGCGAGATGAGAGAAACGCACGTCTACCAGCTTCTTGG
GATTGAGCGATCGATGCCAATAGCGACAGGTGGCCACTGGCGTGGGCAAC
ACAACTCCAGCTGTATAGGCCGCCTGGAAAATCCCCGTCAGATTGACGCG
ACGCGTTATCTCCCGAATCAGGACTGGAGCCACCCGTTTGCTGCGCAACT
TCTTGTGGACGCATAGGAAGTTGATGTCCACAACCTTTAGCACCTTGTCG
TACGACTTTAGCTTGCTGGGAATGGCTGAGATGAAGCCAACCAGTTTGCC
GGACTTCTCCACACGAACGCCAACATGCCAATCGCGTTNCCAG
BS05308.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7436-PA | 1419 | Nmt-RA | 543..1419 | 893..17 | 4241 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1812 | CG7436-RA | 645..1521 | 893..17 | 4299 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8176426..8177302 | 17..893 | 4299 | 99.3 | Plus |
Blast to na_te.dros performed 2015-02-10 22:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1542..1575 | 768..801 | 116 | 82.4 | Plus |
BS05308.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:34 Download gff for
BS05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-PA | 543..1419 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:52 Download gff for
BS05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7436-PA | 543..1419 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:43 Download gff for
BS05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 645..1528 | 11..893 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:34 Download gff for
BS05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 645..1528 | 11..893 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:34 Download gff for
BS05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8176419..8177302 | 11..893 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:43 Download gff for
BS05308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8169519..8170402 | 11..893 | 98 | | Plus |
BS05308.5prime Sequence
939 bp (815 high quality bases) assembled on 2005-12-02
> BS05308.5prime
GAAGTTATCAGTCGACATGCCGAACGAAAACGCAGAGGACCTCTCGGGTC
AAGAGCTAAAGCAGAAGGCCAAGGAGGTGGCCGACGCATCGGAGGCAATG
CTCGAAAAGGTTGTTGCCGGCTTAAATATCCAGGACACGGCATCGACGAA
TGCAGCAGGAAACGAGGATGCGGAGCAGCCTGATGGTGCCAAGAATGAGG
CTTCAGTGTCTGCGAATGCAAGCAAACAGGCCTTGCTACAAGCCGTTTCC
GATGCTATGGCCAGTACCCGTCAGATGGCCAAGAAGTTTGCATTTTGGTC
CACACAGCCAGTCACCAAGCTGGACGAGCAGGTGACCACCAACGAATGCA
TTGAACCGAACAAGGAAATTAGTGAGATTAGAGCATTGCCATACACTCTG
CCAGGCGGCTTCAAATGGGTGACACTAGACCTGAACGACGCCAATGATCT
CAAGGAGCTGTACACGCTGCTCAACGAGAATTATGTGGAGGACGATGATG
CCATGTTCCGTTTCGATTACCAGCCCGAGTTTCTGAAGTGGTCGCTGCAG
CCACCTGGCTGGAAACGCGATTGGCATGTTGGCGTTCGTGTGGAGAAGTC
CGGCAAACTGGTTGGCTTCATCTCAGCCATTCCCAGCAAGCTAAAGTCGT
ACGACAAGGTGCTAAAGGTTGTGGACATCAACTTCCTATGCGTCCACAAG
AAGTTGCGCAGCAAACGGGTGGCTCCAGTCCTGATTCGGGAGATAACGCG
TCGCGTCAATCTGACGGGGATTTTCCAGGCGGCCTATACAGCTGGAGTTG
TGTTGCCCACGCCAGTGGCCACCTGTCGCTATTGGCATCGATCGCTCAAT
CCCCAGAAGCTGGTAGACGTGCGTTTCTCTCATCTCGCACGTAACATGAC
CATGCAGCGGACAATGAAGCTGTACAAGCTACCCGATCA
BS05308.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7436-PA | 1419 | Nmt-RA | 1..923 | 17..939 | 4440 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1812 | CG7436-RA | 103..1025 | 17..939 | 4510 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8176922..8177639 | 939..222 | 3485 | 99 | Minus |
| 3L | 28110227 | 3L | 8178122..8178327 | 222..17 | 1030 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1542..1575 | 684..651 | 116 | 82.4 | Minus |
BS05308.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:35 Download gff for
BS05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:34:53 Download gff for
BS05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7436-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:39:37 Download gff for
BS05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..1024 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:13 Download gff for
BS05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..1024 | 17..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:13 Download gff for
BS05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8176923..8177639 | 222..938 | 99 | <- | Minus |
| 3L | 8178123..8178327 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:39:37 Download gff for
BS05308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8170023..8170739 | 222..938 | 99 | <- | Minus |
| arm_3L | 8171223..8171427 | 17..221 | 100 | | Minus |
BS05308.complete Sequence
1451 bp (1451 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635094
> BS05308.complete
GAAGTTATCAGTCGACATGCCGAACGAAAACGCAGAGGACCTCTCGGGTC
AAGAGCTAAAGCAGAAGGCCAAGGAGGTGGCCGACGCATCGGAGGCAATG
CTCGAAAAGGTTGTTGCCGGCTTAAATATCCAGGACACGGCATCGACGAA
TGCAGCAGGAAACGAGGATGCGGAGCAGCCTGATGGTGCCAAGAATGAGG
CTTCAGTGTCTGCGAATGCAAGCAAACAGGCCTTGCTACAAGCCGTTTCC
GATGCTATGGCCAGTACCCGTCAGATGGCCAAGAAGTTTGCATTTTGGTC
CACACAGCCAGTCACCAAGCTGGACGAGCAGGTGACCACCAACGAATGCA
TTGAACCGAACAAGGAAATTAGTGAGATTAGAGCATTGCCATACACTCTG
CCAGGCGGCTTCAAATGGGTGACACTAGACCTGAACGACGCCAATGATCT
CAAGGAGCTGTACACGCTGCTCAACGAGAATTATGTGGAGGACGATGATG
CCATGTTCCGTTTCGATTACCAGCCCGAGTTTCTGAAGTGGTCGCTGCAG
CCACCTGGCTGGAAACGCGATTGGCATGTTGGCGTTCGTGTGGAGAAGTC
CGGCAAACTGGTTGGCTTCATCTCAGCCATTCCCAGCAAGCTAAAGTCGT
ACGACAAGGTGCTAAAGGTTGTGGACATCAACTTCCTATGCGTCCACAAG
AAGTTGCGCAGCAAACGGGTGGCTCCAGTCCTGATTCGGGAGATAACGCG
TCGCGTCAATCTGACGGGGATTTTCCAGGCGGCCTATACAGCTGGAGTTG
TGTTGCCCACGCCAGTGGCCACCTGTCGCTATTGGCATCGATCGCTCAAT
CCCAAGAAGCTGGTAGACGTGCGTTTCTCTCATCTCGCACGTAACATGAC
CATGCAGCGGACAATGAAGCTGTACAAGCTACCCGATCAGCCCAAGACAA
AGGGCTATCGCCGAATCACAGCGAAGGACATGGACAAGGCCCACAAGCTG
CTGGAGGACTACCTAAAGCGCTTTCAGCTGAGCCCGGTGTTCAGCAAGGA
GGAGTTTCGTCATTGGTTTACCCCCAAAGAAGGTATTATTGATTGCTTCG
TGGTTGCCGACGAAAAGGGCAACATCACTGATCTGACTAGCTACTACTGC
CTGCCATCGTCCGTGATGCACCATCCGGTGCATAAGACGGTTCGTGCCGC
ATATTCGTTCTATAATGTGTCTACAAAGACCCCGTGGCTGGACCTGATGA
ACGATGCACTGATCTCGGCCCGCAATGTCCAGATGGACGTGTACAATGCC
CTCGACCTCATGGAGAACAAGAAGTACTTTGCACCGCTAAAATTCGGAGC
CGGGGATGGAAACCTGCAGTACTACCTCTACAATTGGCGCTGTCCATCGA
TGCAGCCGGAGGAGATTGCTCTGATACTCATGTAGAAGCTTTCTAGACCA
T
BS05308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1419 | CG7436-PA | 1..1419 | 17..1435 | 6945 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1812 | CG7436-RA | 103..1521 | 17..1435 | 6945 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8176426..8177639 | 1435..222 | 5920 | 99.2 | Minus |
| 3L | 28110227 | 3L | 8178122..8178327 | 222..17 | 1030 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1542..1575 | 684..651 | 116 | 82.4 | Minus |
BS05308.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:37 Download gff for
BS05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 1..1419 | 17..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:39 Download gff for
BS05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 84..1509 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:17 Download gff for
BS05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..1521 | 17..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:37 Download gff for
BS05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 84..1509 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:36 Download gff for
BS05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..1521 | 17..1435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:36 Download gff for
BS05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8176426..8177639 | 222..1435 | 99 | <- | Minus |
| 3L | 8178123..8178327 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:17 Download gff for
BS05308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8169526..8170739 | 222..1435 | 99 | <- | Minus |
| arm_3L | 8171223..8171427 | 17..221 | 100 | | Minus |
BS05308.pep Sequence
Translation from 16 to 1434
> BS05308.pep
MPNENAEDLSGQELKQKAKEVADASEAMLEKVVAGLNIQDTASTNAAGNE
DAEQPDGAKNEASVSANASKQALLQAVSDAMASTRQMAKKFAFWSTQPVT
KLDEQVTTNECIEPNKEISEIRALPYTLPGGFKWVTLDLNDANDLKELYT
LLNENYVEDDDAMFRFDYQPEFLKWSLQPPGWKRDWHVGVRVEKSGKLVG
FISAIPSKLKSYDKVLKVVDINFLCVHKKLRSKRVAPVLIREITRRVNLT
GIFQAAYTAGVVLPTPVATCRYWHRSLNPKKLVDVRFSHLARNMTMQRTM
KLYKLPDQPKTKGYRRITAKDMDKAHKLLEDYLKRFQLSPVFSKEEFRHW
FTPKEGIIDCFVVADEKGNITDLTSYYCLPSSVMHHPVHKTVRAAYSFYN
VSTKTPWLDLMNDALISARNVQMDVYNALDLMENKKYFAPLKFGAGDGNL
QYYLYNWRCPSMQPEEIALILM*
BS05308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-PA | 472 | CG7436-PA | 1..472 | 1..472 | 2477 | 100 | Plus |
