Clone Sequence Records
BS05312.3prime Sequence
902 bp (811 high quality bases) assembled on 2005-12-02
> BS05312.3prime
ATGGTCTAGAAAGCTTTTAAATCAACAACCGCTGCAGCTGACTCTGAAGT
TCCTTGAGTGAATGTTGAAGACGATTAGTGTCGGGCTTTTGGTAGCAAAT
ATTCAGGCAGCCGGCCACTATGTCTTGAGCCTTGCCAACAATTCGTCGTT
TTGACCGGTACCAAATAGATTGTGCGTTGTCTGCCAGAAGCGAGACCACT
CGTATGACGGATTGTATTAAATGCCACTCATTACCCTCGTTGGCCCACAC
TCGTTCGTTCATTGAAATCATTCTCGAATAGTATTCCAGGAGCAGTTCAA
TGTCCAAATTCATACTCACCAGTTTTTCCGGCACTATGCCCTCGGGAAAT
CGCAGTTGGCAGGCTTTAACTTCCAGTTCCCTTATGAGAAAGGCAAAGGG
AAAGCAAACTCCAGACTCGCCATACTCCCTTACCAAGATTTCGATTTTCG
TGAATAACCTATTGCAGCGCTCACTAGTTGTGCCCGGCTTATCCACAACG
CTGTTGATAATCTGGCCCCAAACGGACTCGATCAGTAGGGGGTCGTTGTG
ATGCGAGCAGTTGAGTATGGACAATTGGCACTCCCAAAGGTCGAAGGGCT
CCGCAAAGTGCTGGTATAGCTGAGTTATGTCGTACAACGCATAGTTTAGT
TCCTTAACAGCCGTAGCTGCCTCCAGCTTATCGCTAGCCAACTCTGTCAT
CGCGGCAAGCACTGATTTTTGAACTCGTGCGATGTCCAGCTTATCCTCTA
GCTCTTTCAGGAATATTCCATTGCTTAATGAAGAGCCAACGTTACCATTT
CGCATACACATAACAGCACGCACCAAGTACTCAATGCGCTGCTCCAGATT
AATGTTTTCACTGCGTGTCATAGCCAAATTGTCCCATATATGGGCTGCCT
GG
BS05312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4579-PB | 3372 | Nup154-RB | 2487..3372 | 902..17 | 4405 | 99.8 | Minus |
| CG4579-PA | 4098 | Nup154-RA | 3213..4098 | 902..17 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup154-RD | 5420 | CG4579-RD | 3373..4259 | 902..16 | 4420 | 99.9 | Minus |
| Nup154-RC | 4612 | CG4579-RC | 3373..4259 | 902..16 | 4420 | 99.9 | Minus |
| Nup154-RA | 4371 | CG4579-RA | 3373..4259 | 902..16 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11008909..11009377 | 741..273 | 2345 | 100 | Minus |
| 2L | 23513712 | 2L | 11008683..11008845 | 902..740 | 800 | 99.4 | Minus |
| 2L | 23513712 | 2L | 11009627..11009760 | 149..16 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 11009441..11009565 | 274..150 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:55:27 has no hits.
BS05312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:40 Download gff for
BS05312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4579-PA | 3213..4098 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:01 Download gff for
BS05312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4579-PA | 3213..4098 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:54:40 Download gff for
BS05312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 3373..4265 | 9..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:51 Download gff for
BS05312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 3373..4265 | 9..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:51 Download gff for
BS05312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11008683..11008845 | 740..902 | 99 | -> | Minus |
| 2L | 11008911..11009377 | 273..739 | 100 | -> | Minus |
| 2L | 11009443..11009565 | 150..272 | 100 | -> | Minus |
| 2L | 11009627..11009766 | 9..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:54:40 Download gff for
BS05312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11009443..11009565 | 150..272 | 100 | -> | Minus |
| arm_2L | 11008683..11008845 | 740..902 | 99 | -> | Minus |
| arm_2L | 11008911..11009377 | 273..739 | 100 | -> | Minus |
| arm_2L | 11009627..11009766 | 9..149 | 97 | | Minus |
BS05312.5prime Sequence
913 bp (812 high quality bases) assembled on 2005-12-02
> BS05312.5prime
GAAGTTATCAGTCGACATGACTCTTCCGCAAGCACAGCTGGACTTTTTCA
CGACGGCGACCAGTATGCTGGAATGGCATTACAATCTGGAGAGAAATAAG
CCGGGTCTGCTGGAACTGACCGGCGTTAGCCAGCATGGGCGGGCCACGAT
GAGCGGACTTAATGACTACGATTACCAGAGCCTGTCGTTTTTGAAATCGG
ATAGAACACATAACCTACAACAAATGCGAACGGTGACCAAGTCGGCTATT
CCCAACGAGATTCTGGAGCACTTTAAGCACATAAAATGCCACTGCACCAT
GGGCCTCTTTCCGGAAATCGGACGTGCCTGGCTGACTATCGATTCGGAAA
TCTACATCTGGACGTTCAATCAGACGAGGGATGTGGCGTACTACGATGGC
CTCAGTCATCTGATCGTAAGCGTTGGCCTGGTGAAACCAAAACCCGGCGT
CTTTGTGCAGGACGTCAAGTACCTCCTGGTTCTCACTACGCCCATTGAGG
TCATTGTCCTGGGCGTGACATTCGGTGAGAGCTCGTACAACGAAATGCAG
CTGATGAACCGGCCAGTTTTTGTGATTGGTACCGACAACGTGTCCATCAG
CGTCATCAAAGGAACGGATGACGGCCGCATCTTTTTGGGCGGTCGCGATG
GCTGCCTCTATGAAATTTACTATCAGGCCGAGTCCAGTTGGTTTGGCAAG
CGATGCAAGAAAATAAATCTCTCCCAAGGACTGGTCTCCTATATGGTTCC
CAGTTTTTTGAAGGTCTTTTCGGAAGTGGATCCAATCGAACACATTGAGA
TCGATAACAGTCGCAAGCTTCTCTATGTCCTTACGGAAAAAAGTGTCATT
GAGGCTTGGGACATCAGTACGAGTTACACGACAGCTCGAAGACTANGTCG
GATTACCCAGAAC
BS05312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4579-PA | 4098 | Nup154-RA | 1..897 | 17..913 | 4441 | 99.7 | Plus |
| CG4579-PB | 3372 | Nup154-RB | 1..171 | 743..913 | 811 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup154-RD | 5420 | CG4579-RD | 161..1057 | 17..913 | 4459 | 99.8 | Plus |
| Nup154-RC | 4612 | CG4579-RC | 161..1057 | 17..913 | 4459 | 99.8 | Plus |
| Nup154-RA | 4371 | CG4579-RA | 161..1057 | 17..913 | 4459 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11005368..11005862 | 279..773 | 2475 | 100 | Plus |
| 2L | 23513712 | 2L | 11005139..11005301 | 116..278 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 11005920..11006061 | 772..913 | 684 | 98.6 | Plus |
| 2L | 23513712 | 2L | 11004980..11005078 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:05:51 has no hits.
BS05312.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:41 Download gff for
BS05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4579-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:02 Download gff for
BS05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4579-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:26 Download gff for
BS05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 148..1057 | 3..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:14 Download gff for
BS05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 148..1057 | 3..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:14 Download gff for
BS05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11004967..11005078 | 3..115 | 96 | -> | Plus |
| 2L | 11005139..11005301 | 116..278 | 100 | -> | Plus |
| 2L | 11005368..11005861 | 279..772 | 100 | -> | Plus |
| 2L | 11005921..11006061 | 773..913 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:26 Download gff for
BS05312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11004967..11005078 | 3..115 | 96 | -> | Plus |
| arm_2L | 11005139..11005301 | 116..278 | 100 | -> | Plus |
| arm_2L | 11005368..11005861 | 279..772 | 100 | -> | Plus |
| arm_2L | 11005921..11006061 | 773..913 | 98 | | Plus |
BS05312.complete Sequence
4130 bp assembled on 2010-08-12
GenBank Submission: KX794472
> BS05312.complete
GAAGTTATCAGTCGACATGACTCTTCCGCAAGCACAGCTGGACTTTTTCA
CGACGGCGACCAGTATGCTGGAATGGCATTACAATCTGGAGAGAAATAAG
CCGGGTCTGCTGGAACTGACCGGCGTTAGCCAGCATGGGCGGGCCACGAT
GAGCGGACTTAATGACTACGATTACCAGAGCCTGTCGTTTTTGAAATCGG
ATAGAACACATAACCTACAACAAATGCGAACGGTGACCAAGTCGGCTATT
CCCAACGAGATTCTGGAGCACTTTAAGCACATAAAATGCCACTGCACCAT
GGGCCTCTTTCCGGAAATCGGACGTGCCTGGCTGACTATCGATTCGGAAA
TCTACATCTGGACGTTCAATCAGACGAGGGATGTGGCGTACTACGATGGC
CTCAGTCATCTGATCGTAAGCGTTGGCCTGGTGAAACCAAAACCCGGCGT
CTTTGTGCAGGACGTCAAGTACCTCCTGGTTCTCACTACGCCCATTGAGG
TCATTGTCCTGGGCGTGACATTCGGTGAGAGCTCGTACAACGAAATGCAG
CTGATGAACCGGCCAGTTTTTGTGATTGGTACCGACAACGTGTCCATCAG
CGTCATCAAAGGAACGGATGACGGCCGCATCTTTTTGGGCGGTCGCGATG
GCTGCCTCTATGAAATTTACTATCAGGCCGAGTCCAGTTGGTTTGGCAAG
CGATGCAAGAAAATAAATCTCTCCCAAGGACTGGTCTCCTATATGGTTCC
CAGTTTTTTGAAGGTCTTTTCGGAAGTGGATCCAATCGAACACATTGAGA
TCGATAACAGTCGCAAGCTTCTCTATGTCCTTACGGAAAAAGGTGTCATT
GAGGCTTGGGACATCAGTACGAGTTACACGACAGCTCGAAGACTAGGTCG
GATTACCCAGAACGATATTACGAATCAAGCAGTTAGTCTGATCACGACTG
TGGACCCGTCCATTTTTAAAAGTGTGAAAGCCATCTGCCCTCTGAGCGCC
GACGATGCCGACAAACTACATCTTGTGGCCGTTACTCAGTGTGGTGTGCG
GCTCTTTTTCTCCACAACATCGCTAAATGTGAAGCAACAATTTGGTCCCG
CGGTTCCTTGCAGTCCAGGTGAGAATACAGGATTCGGTCAGCCAGCAGTT
CAGCCACCACTGTCTCCAAATGCTGAGGCTCCTAAGGGACTTTATCTGCT
CCACGTGCGTCTACCACCCGGCTACACCCCAAATGCCACCACCAACAAAC
CAAAGCAGGTCCATGCCGCTCACTACACGGAGGGAACCATGTTGATGATC
ACAACGCAACAGCATGAACAGGATCTCCTCTGGTCGCTCAGCTCTGCCCC
ATCGGTTAACTTTACCTACCTGGTGGAGTCGACGGCTCTGGAGAGCCTGG
ATGGAGTTGTTTGGGGATTGGCTGAGGTACATGAACCGTCGACGCCACAA
CGAAAGTCACCCTTAAATAGTGCCCGACACGCCCGCAAAGTAGCCCTGCT
CACCAACCAAGGCACACATATCATAGAGGTGCTTAAAATGGTGGACGTAC
TGCGTCAGATCCTTCTGTCGTGCAATGGCCCACACCACGAGGAGGTGAAG
ATGTTCTTCCAGTCGCAGAATCAGCGAGAGGCATGTGTCACGGCTCTGCT
GCTGGCCACATCGGATACTTATCGTGGCAGTGACGTTGCTTTGTGGGCCG
CCCAGGCGTTTATGCTGTACGGCGGAGAGCCATGCTATCAGCATCAAAAG
TTCCTGAACGCCAGCAACCGCAATATGGCTAATCAAACTCTAGGCCCGAA
TACGACGAATGTAAGGGAGCGTCAATCCATGTTTATGTCCACGCCAATGC
CGAATAGCGTGGCAAATAGTCCGGTTGGTTTTCCTGGATCGCAGTTCAAT
CAGCCCATAAGTCCAATTGGAAATATGCAGCCACCACAGGTGGCAGTTAG
TAACGAGAATTCCCCAATCGTTTTCTCGGCCAAACACGACGGACTTTACA
TGTATGTCTCCCGCATGCTGCATTCTGTTTGGCAAATGCGCTGTGTAAAT
GAGCAATTTTGCTCTAATCTAAGTCAGAGTGAGTGTGCCCTCTTGCTATC
CGATCTGCGTTCCCTGCGTAGCTTTCTGGAAGTGCACTCTGTGCACGATA
TTTCCTCGACTACTCGAGTGTCATTTGATAACCATTTGGATAGAACCAAT
TCATATAACACCATCATGATGGGCAACACTTTGCTGCCAATTCCTGAGCA
ACGCGTATTGTCCGAGCAGGCTCAAGTAGAGGAAACACGTTCGCTTTCCG
CTCTCAACCTATTTGTCAAACATGCATGTGAGGTTATATCGCTGTGGAAC
ATCCTAAACTCGCATTCCTTCCAGCTGATATGCGTGCAACTCAGTCCGGA
ACATCAGAAGTTGTTGACATGCTCCACCTTCCGGGATCTTCTGATTACAC
GTTCAGAGGTCTGCGCATTCTTGATCATCTCGCTGATCAATCTGTATCTG
AAGGACGCGGCGGGAGTGTCTGAAGTGTCCAAGAACTTACGTGAGAACTG
CCCCAACCTATACAGGCATGAGGATGACGTGACCTACAAGGCCACCGAGT
TGTTGATGAATGCAAAGAATTGCACTTCGGCAACCGAAAAGGAACATATG
CTGCGAACCACCCTGCATATGTGCAAGGAAGCTGCTCCCACATTGCCACT
GCATAGTATTTGCATGCAATTCATATCGGCTGACTTCTTTGAGGGAGTGA
TCGAGCTTTCGGCTGTTTGTGCCTCAAAAAGTGATCCAGAGGAGGTTGGT
GTTCATTTCTATAACAATGGGGAACCCGCCGATGATCGCGAGGGTTACAC
TTGCTTTGCCACAAGGATGGCCTACTACAAGGAAGTGCAACTTATGCTGG
ACCATATCTACCAGAGAGTATGCAACAAGACGCACGTTCAGGATAAGTCT
ATAAATCCACTTAAAGGTACGGCTAAAGCGTCCGATGCAAAAAACGGTGC
TACGCAAACGATTCCAAAAATAGTGGCCCATACCCTAAAGGTGAAAGACC
CGCTCATTCATATAACGCTCTACGAATGGCTGCTGGCCCACGACATGCTC
AAAGAGCTTTTAGACGTGGTTGAGCCGTCATTAGGAGAGTTCTTGCGGCG
CAGTGTGTCGCAAAATGTAGATAATGTCGTTCTTATCGATTTGCTGTGGA
AGTACTACGAAAAGAATAGCCATCATTCCCAGGCAGCCCATATATTGGAC
AATTTGGCTATGACACGCAGTGAAAACATTAATCTGGAGCAGCGCATTGA
GTACTTGGTGCGTGCTGTTATGTGTATGCGAAATGGTAACGTTGGCTCTT
CATTAAGCAATGGAATATTCCTGAAAGAGCTAGAGGATAAGCTGGACATC
GCACGAGTTCAAAAATCAGTGCTTGCCGCGATGACAGAGTTGGCTAGCGA
TAAGCTGGAGGCAGCTACGGCTGTTAAGGAACTAAACTATGCGTTGTACG
ACATAACTCAGCTATACCAGCACTTTGCGGAGCCCTTCGACCTTTGGGAG
TGCCAATTGTCCATACTCAACTGCTCGCATCACAACGACCCCCTACTGAT
CGAGTCCGTTTGGGGCCAGATTATCAACAGCGTTGTGGATAAGCCGGGCA
CAACTAGTGAGCGCTGCAATAGGTTATTCACGAAAATCGAAATCTTGGTA
AGGGAGTATGGCGAGTCTGGAGTTTGCTTTCCCTTTGCCTTTCTCATAAG
GGAACTGGAAGTTAAAGCCTGCCAACTGCGATTTCCCGAGGGCATAGTGC
CGGAAAAACTGGTGAGTATGAATTTGGACATTGAACTGCTCCTGGAATAC
TATTCGAGAATGATTTCAATGAACGAACGAGTGTGGGCCAACGAGGGTAA
TGAGTGGCATTTAATACAATCCGTCATACGAGTGGTCTCGCTTCTGGCAG
ACAACGCACAATCTATTTGGTACCGGTCAAAACGACGAATTGTTGGCAAG
GCTCAAGACATAGTGGCCGGCTGCCTGAATATTTGCTACCAAAAGCCCGA
CACTAATCGTCTTCAACATTCACTCAAGGAACTTCAGAGTCAGCTGCAGC
GGTTGTTGATTTAAAAGCTTTCTAGACCAT
BS05312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup154-RD | 4098 | CG4579-PD | 1..4098 | 17..4114 | 20490 | 100 | Plus |
| Nup154-RC | 4098 | CG4579-PC | 1..4098 | 17..4114 | 20490 | 100 | Plus |
| Nup154-RA | 4098 | CG4579-PA | 1..4098 | 17..4114 | 20490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup154-RD | 5420 | CG4579-RD | 161..4259 | 17..4115 | 20495 | 100 | Plus |
| Nup154-RC | 4612 | CG4579-RC | 161..4259 | 17..4115 | 20495 | 100 | Plus |
| Nup154-RA | 4371 | CG4579-RA | 161..4259 | 17..4115 | 20495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11006162..11007132 | 946..1916 | 4855 | 100 | Plus |
| 2L | 23513712 | 2L | 11007715..11008262 | 2319..2866 | 2740 | 100 | Plus |
| 2L | 23513712 | 2L | 11008318..11008845 | 2864..3391 | 2640 | 100 | Plus |
| 2L | 23513712 | 2L | 11005368..11005862 | 279..773 | 2475 | 100 | Plus |
| 2L | 23513712 | 2L | 11008909..11009377 | 3390..3858 | 2345 | 100 | Plus |
| 2L | 23513712 | 2L | 11007192..11007431 | 1917..2156 | 1200 | 100 | Plus |
| 2L | 23513712 | 2L | 11005920..11006094 | 772..946 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 11005139..11005301 | 116..278 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 11007495..11007656 | 2157..2318 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 11009627..11009760 | 3982..4115 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 11009441..11009565 | 3857..3981 | 625 | 100 | Plus |
| 2L | 23513712 | 2L | 11004980..11005078 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:56:32 has no hits.
BS05312.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-12 09:32:02 Download gff for
BS05312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 158..4253 | 17..4112 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:53 Download gff for
BS05312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 161..4256 | 17..4112 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:11 Download gff for
BS05312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 161..4256 | 17..4112 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:11 Download gff for
BS05312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11009443..11009565 | 3859..3981 | 100 | -> | Plus |
| 2L | 11009627..11009757 | 3982..4112 | 100 | | Plus |
| 2L | 11004980..11005078 | 17..115 | 100 | -> | Plus |
| 2L | 11005139..11005301 | 116..278 | 100 | -> | Plus |
| 2L | 11005368..11005861 | 279..772 | 100 | -> | Plus |
| 2L | 11005921..11006093 | 773..945 | 100 | -> | Plus |
| 2L | 11006162..11007132 | 946..1916 | 100 | -> | Plus |
| 2L | 11007192..11007431 | 1917..2156 | 100 | -> | Plus |
| 2L | 11007495..11007656 | 2157..2318 | 100 | -> | Plus |
| 2L | 11007715..11008261 | 2319..2865 | 100 | -> | Plus |
| 2L | 11008320..11008845 | 2866..3391 | 100 | -> | Plus |
| 2L | 11008911..11009377 | 3392..3858 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:53 Download gff for
BS05312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11005139..11005301 | 116..278 | 100 | -> | Plus |
| arm_2L | 11004980..11005078 | 17..115 | 100 | -> | Plus |
| arm_2L | 11005368..11005861 | 279..772 | 100 | -> | Plus |
| arm_2L | 11005921..11006093 | 773..945 | 100 | -> | Plus |
| arm_2L | 11006162..11007132 | 946..1916 | 100 | -> | Plus |
| arm_2L | 11007192..11007431 | 1917..2156 | 100 | -> | Plus |
| arm_2L | 11007495..11007656 | 2157..2318 | 100 | -> | Plus |
| arm_2L | 11007715..11008261 | 2319..2865 | 100 | -> | Plus |
| arm_2L | 11008320..11008845 | 2866..3391 | 100 | -> | Plus |
| arm_2L | 11008911..11009377 | 3392..3858 | 100 | -> | Plus |
| arm_2L | 11009443..11009565 | 3859..3981 | 100 | -> | Plus |
| arm_2L | 11009627..11009757 | 3982..4112 | 100 | | Plus |
BS05312.pep Sequence
Translation from 16 to 4113
> BS05312.pep
MTLPQAQLDFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLND
YDYQSLSFLKSDRTHNLQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPE
IGRAWLTIDSEIYIWTFNQTRDVAYYDGLSHLIVSVGLVKPKPGVFVQDV
KYLLVLTTPIEVIVLGVTFGESSYNEMQLMNRPVFVIGTDNVSISVIKGT
DDGRIFLGGRDGCLYEIYYQAESSWFGKRCKKINLSQGLVSYMVPSFLKV
FSEVDPIEHIEIDNSRKLLYVLTEKGVIEAWDISTSYTTARRLGRITQND
ITNQAVSLITTVDPSIFKSVKAICPLSADDADKLHLVAVTQCGVRLFFST
TSLNVKQQFGPAVPCSPGENTGFGQPAVQPPLSPNAEAPKGLYLLHVRLP
PGYTPNATTNKPKQVHAAHYTEGTMLMITTQQHEQDLLWSLSSAPSVNFT
YLVESTALESLDGVVWGLAEVHEPSTPQRKSPLNSARHARKVALLTNQGT
HIIEVLKMVDVLRQILLSCNGPHHEEVKMFFQSQNQREACVTALLLATSD
TYRGSDVALWAAQAFMLYGGEPCYQHQKFLNASNRNMANQTLGPNTTNVR
ERQSMFMSTPMPNSVANSPVGFPGSQFNQPISPIGNMQPPQVAVSNENSP
IVFSAKHDGLYMYVSRMLHSVWQMRCVNEQFCSNLSQSECALLLSDLRSL
RSFLEVHSVHDISSTTRVSFDNHLDRTNSYNTIMMGNTLLPIPEQRVLSE
QAQVEETRSLSALNLFVKHACEVISLWNILNSHSFQLICVQLSPEHQKLL
TCSTFRDLLITRSEVCAFLIISLINLYLKDAAGVSEVSKNLRENCPNLYR
HEDDVTYKATELLMNAKNCTSATEKEHMLRTTLHMCKEAAPTLPLHSICM
QFISADFFEGVIELSAVCASKSDPEEVGVHFYNNGEPADDREGYTCFATR
MAYYKEVQLMLDHIYQRVCNKTHVQDKSINPLKGTAKASDAKNGATQTIP
KIVAHTLKVKDPLIHITLYEWLLAHDMLKELLDVVEPSLGEFLRRSVSQN
VDNVVLIDLLWKYYEKNSHHSQAAHILDNLAMTRSENINLEQRIEYLVRA
VMCMRNGNVGSSLSNGIFLKELEDKLDIARVQKSVLAAMTELASDKLEAA
TAVKELNYALYDITQLYQHFAEPFDLWECQLSILNCSHHNDPLLIESVWG
QIINSVVDKPGTTSERCNRLFTKIEILVREYGESGVCFPFAFLIRELEVK
ACQLRFPEGIVPEKLVSMNLDIELLLEYYSRMISMNERVWANEGNEWHLI
QSVIRVVSLLADNAQSIWYRSKRRIVGKAQDIVAGCLNICYQKPDTNRLQ
HSLKELQSQLQRLLI*
BS05312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup154-PD | 1365 | CG4579-PD | 1..1365 | 1..1365 | 7109 | 100 | Plus |
| Nup154-PC | 1365 | CG4579-PC | 1..1365 | 1..1365 | 7109 | 100 | Plus |
| Nup154-PA | 1365 | CG4579-PA | 1..1365 | 1..1365 | 7109 | 100 | Plus |
