Clone BS05314 Report

Search the DGRC for BS05314

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:53
Well:14
Vector:pDNR-Dual
Associated Gene/Transcriptcapt-RA
Protein status:BS05314.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05314.3prime Sequence

853 bp (851 high quality bases) assembled on 2005-12-02

> BS05314.3prime
ATGGTCTAGAAAGCTTTTAGCCGAGGCTGTCCACGCACACAGTCTTCAGG
GTCTTGCCGGCAATCGTGGTCTTATACTGCTCCGGTAAAGCCAACTCGGT
ATAATCGCCGCTGTCGTCGGGCAACAGGATGTTCATCTCCGAGGACTTGG
AGTTGACGATCTCCACGCCCAGCGAGTCCTTGGACAGATACATCTGGCAG
CCGTCGGTCTTGTCGATCGATACCGTCGGCACCGAGCCGAGCACCTGCAT
CTGCACGCTCTGGCAGTTGACGAACTCCACGGAGGCCACCACGGAATCGA
ACAGCAGGGAGCACTTCTTGCAGGAGTCGAAGACGATGTTGTTCACCTTG
CCCTTGACGGTCAGAGTGGATCCCTCACACTTGAACACATACACCACGTT
GTTCATCTCGGCGTTCTCCACCAACAGCCCGGTGTTGTTCTTCTGGTACT
CGATGATCCACTTCTTTCCGTCGCGCTCGAAAACGGGCGCCTTGGCTTGC
GCAGCTGATGGAGCAGCAACGGCCTTGCTGCCGCCCGACTGGGCTGGCGA
TTTGAACGGAGCCGGTCCAGTGCGTAGAGATGGATTTTTATGGGTCTGCA
TGTCGCCAGTGACCTTCTTCAAGCCCTTGGTGATGTCGGCACCCTGGTTG
ATCTGGGCGAAGAGGGCGCTGCGATCATCTCCGGCGCTATCCAGCTTGAG
GGCACTCAGATCCAGCATGGGCGGCGGTGGGGGCAGACCACCGGGTGGCG
GTGGTGGCGGGGCACCTCCGGCGGGGGCCGCTCCCTTGCCGGACCACACC
AAGCCCGTGGTGTGGTACTGCCGGATGTAGGCCTGCAGTTCGGTGAGCGT
CTG

BS05314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33979-PA 1275 capt-RA 439..1275 853..17 4185 100 Minus
CG33979-PB 2352 capt-RB 1516..2352 853..17 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
capt-RC 2422 CG33979-RC 1232..2068 853..17 4185 100 Minus
capt-RA 2040 CG33979-RA 850..1686 853..17 4185 100 Minus
capt-RB 3049 CG33979-RB 1859..2695 853..17 4185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1152177..1152701 101..625 2625 100 Plus
2L 23513712 2L 1152770..1152999 624..853 1150 100 Plus
2L 23513712 2L 1152032..1152115 17..100 420 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:14:36 has no hits.

BS05314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:43 Download gff for BS05314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33979-PB 1516..2352 17..853 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:05 Download gff for BS05314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33979-PB 1516..2352 17..853 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:38 Download gff for BS05314.3prime
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1859..2704 8..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:00 Download gff for BS05314.3prime
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1859..2704 8..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:00 Download gff for BS05314.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1152023..1152115 8..100 95 <- Plus
2L 1152771..1152999 625..853 100   Plus
2L 1152177..1152700 101..624 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:38 Download gff for BS05314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1152023..1152115 8..100 95 <- Plus
arm_2L 1152177..1152700 101..624 100 <- Plus
arm_2L 1152771..1152999 625..853 100   Plus

BS05314.5prime Sequence

838 bp (690 high quality bases) assembled on 2005-12-02

> BS05314.5prime
GAAGTTATCAGTCGACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGG
GTCCGCTGAGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTG
GCGCAGCATGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTA
CGTGACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGG
AGCTTCTGAAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGC
GAGAAGCACCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGA
AAGCATTCCCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCT
ATGTCAAGGAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTC
AAGGAGTGGAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTG
GGTGCAGACGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCA
CGGGCTTGGTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCG
CCACCACCGCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCT
GAGTGCCCTCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCCTCTTCG
CCCAGATCAACCAGGGTGCCGACATCACCAAGGGCTTGAAGAACGTCACT
GGCGACATGCAGACCCATAAAAATCCATCTCTACGCACTGGACCGGCTCC
GTTCAAATCGCCAGCCCAGTCGGGCGGCAGCAAGGCCGTTGCTGCTCCAT
CAGCTGCGCAAGCCAAGGCGCCCGTTTTCGAGCGCGAC

BS05314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33979-PB 2352 capt-RB 1076..1899 15..838 4095 99.8 Plus
CG33979-PA 1275 capt-RA 1..822 17..838 4085 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
capt-RC 2422 CG33979-RC 792..1615 15..838 4105 99.9 Plus
capt-RA 2040 CG33979-RA 410..1233 15..838 4105 99.9 Plus
capt-RB 3049 CG33979-RB 1419..2242 15..838 4105 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1152770..1153319 684..135 2750 100 Minus
2L 23513712 2L 1152546..1152701 838..683 765 99.4 Minus
2L 23513712 2L 1153386..1153506 135..15 605 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:19:56 has no hits.

BS05314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:44 Download gff for BS05314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33979-PB 1071..1899 9..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:06 Download gff for BS05314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33979-PB 1071..1899 9..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:50:03 Download gff for BS05314.5prime
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1414..2242 9..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:15 Download gff for BS05314.5prime
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1414..2242 9..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:15 Download gff for BS05314.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1152546..1152700 684..838 99 <- Minus
2L 1152771..1153318 136..683 100 <- Minus
2L 1153386..1153511 9..135 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:50:03 Download gff for BS05314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1152546..1152700 684..838 99 <- Minus
arm_2L 1152771..1153318 136..683 100 <- Minus
arm_2L 1153386..1153511 9..135 98   Minus

BS05314.complete Sequence

1307 bp assembled on 2007-10-17

GenBank Submission: FJ635095

> BS05314.complete
GAAGTTATCAGTCGACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGG
GTCCGCTGAGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTG
GCGCAGCATGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTA
CGTGACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGG
AGCTTCTGAAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGC
GAGAAGCACCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGA
AAGCATTCCCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCT
ATGTCAAGGAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTC
AAGGAGTGGAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTG
GGTGCAGACGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCA
CGGGCTTGGTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCG
CCACCACCGCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCT
GAGTGCCCTCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCCTCTTCG
CCCAGATCAACCAGGGTGCCGACATCACCAAGGGCTTGAAGAAGGTCACT
GGCGACATGCAGACCCATAAAAATCCATCTCTACGCACTGGACCGGCTCC
GTTCAAATCGCCAGCCCAGTCGGGCGGCAGCAAGGCCGTTGCTGCTCCAT
CAGCTGCGCAAGCCAAGGCGCCCGTTTTCGAGCGCGACGGAAAGAAGTGG
ATCATCGAGTACCAGAAGAACAACACCGGGCTGTTGGTGGAGAACGCCGA
GATGAACAACGTGGTGTATGTGTTCAAGTGTGAGGGATCCACTCTGACCG
TCAAGGGCAAGGTGAACAACATCGTCTTCGACTCCTGCAAGAAGTGCTCC
CTGCTGTTCGATTCCGTGGTGGCCTCCGTGGAGTTCGTCAACTGCCAGAG
CGTGCAGATGCAGGTGCTCGGCTCGGTGCCGACGGTATCGATCGACAAGA
CCGACGGCTGCCAGATGTATCTGTCCAAGGACTCGCTGGGCGTGGAGATC
GTCAACTCCAAGTCCTCGGAGATGAACATCCTGTTGCCCGACGACAGCGG
CGATTATACCGAGTTGGCTTTACCGGAGCAGTATAAGACCACGATTGCCG
GCAAGACCCTGAAGACTGTGTGCGTGGACAGCCTCGGCTAAAAGCTTTCT
AGACCAT

BS05314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
capt-RB 2352 CG33979-PB 1076..2352 15..1291 6385 100 Plus
capt-RC 1275 CG33979-PC 1..1275 17..1291 6375 100 Plus
capt-RA 1275 CG33979-PA 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
capt-RC 2422 CG33979-RC 792..2068 15..1291 6385 100 Plus
capt-RA 2040 CG33979-RA 410..1686 15..1291 6385 100 Plus
capt-RB 3049 CG33979-RB 1419..2695 15..1291 6385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1152770..1153319 684..135 2750 100 Minus
2L 23513712 2L 1152177..1152701 1207..683 2625 100 Minus
2L 23513712 2L 1153386..1153506 135..15 605 100 Minus
2L 23513712 2L 1152032..1152115 1291..1208 420 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:23:53 has no hits.

BS05314.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:43 Download gff for BS05314.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1071..2352 9..1291 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:47 Download gff for BS05314.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1409..2699 9..1300 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:15 Download gff for BS05314.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1421..2693 17..1289 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:46 Download gff for BS05314.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1416..2688 17..1289 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:37 Download gff for BS05314.complete
Subject Subject Range Query Range Percent Splice Strand
capt-RB 1421..2693 17..1289 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:37 Download gff for BS05314.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1153386..1153504 17..135 100   Minus
2L 1152034..1152115 1208..1289 100 <- Minus
2L 1152177..1152700 684..1207 100 <- Minus
2L 1152771..1153318 136..683 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:15 Download gff for BS05314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1152034..1152115 1208..1289 100 <- Minus
arm_2L 1152177..1152700 684..1207 100 <- Minus
arm_2L 1152771..1153318 136..683 100 <- Minus
arm_2L 1153386..1153504 17..135 100   Minus

BS05314.pep Sequence

Translation from 16 to 1290

> BS05314.pep
MSVAGFEDIVAGPLSQYLTLSAKIGGDVAQHAELVKSAFGSQLQYVTLAT
QIAQPAQPKQAELLKPTSTQISAIQDFREKHRSSPFFNHLSAISESIPAL
GWVCVEKTPGPYVKEMNDAGQFYTNRVLKEWKEKDVTHVEWARAWVQTLT
ELQAYIRQYHTTGLVWSGKGAAPAGGAPPPPPPGGLPPPPPMLDLSALKL
DSAGDDRSALFAQINQGADITKGLKKVTGDMQTHKNPSLRTGPAPFKSPA
QSGGSKAVAAPSAAQAKAPVFERDGKKWIIEYQKNNTGLLVENAEMNNVV
YVFKCEGSTLTVKGKVNNIVFDSCKKCSLLFDSVVASVEFVNCQSVQMQV
LGSVPTVSIDKTDGCQMYLSKDSLGVEIVNSKSSEMNILLPDDSGDYTEL
ALPEQYKTTIAGKTLKTVCVDSLG*

BS05314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
capt-PC 424 CG33979-PC 1..424 1..424 2200 100 Plus
capt-PA 424 CG33979-PA 1..424 1..424 2200 100 Plus
capt-PB 783 CG33979-PB 360..783 1..424 2200 100 Plus