Clone Sequence Records
BS05314.3prime Sequence
853 bp (851 high quality bases) assembled on 2005-12-02
> BS05314.3prime
ATGGTCTAGAAAGCTTTTAGCCGAGGCTGTCCACGCACACAGTCTTCAGG
GTCTTGCCGGCAATCGTGGTCTTATACTGCTCCGGTAAAGCCAACTCGGT
ATAATCGCCGCTGTCGTCGGGCAACAGGATGTTCATCTCCGAGGACTTGG
AGTTGACGATCTCCACGCCCAGCGAGTCCTTGGACAGATACATCTGGCAG
CCGTCGGTCTTGTCGATCGATACCGTCGGCACCGAGCCGAGCACCTGCAT
CTGCACGCTCTGGCAGTTGACGAACTCCACGGAGGCCACCACGGAATCGA
ACAGCAGGGAGCACTTCTTGCAGGAGTCGAAGACGATGTTGTTCACCTTG
CCCTTGACGGTCAGAGTGGATCCCTCACACTTGAACACATACACCACGTT
GTTCATCTCGGCGTTCTCCACCAACAGCCCGGTGTTGTTCTTCTGGTACT
CGATGATCCACTTCTTTCCGTCGCGCTCGAAAACGGGCGCCTTGGCTTGC
GCAGCTGATGGAGCAGCAACGGCCTTGCTGCCGCCCGACTGGGCTGGCGA
TTTGAACGGAGCCGGTCCAGTGCGTAGAGATGGATTTTTATGGGTCTGCA
TGTCGCCAGTGACCTTCTTCAAGCCCTTGGTGATGTCGGCACCCTGGTTG
ATCTGGGCGAAGAGGGCGCTGCGATCATCTCCGGCGCTATCCAGCTTGAG
GGCACTCAGATCCAGCATGGGCGGCGGTGGGGGCAGACCACCGGGTGGCG
GTGGTGGCGGGGCACCTCCGGCGGGGGCCGCTCCCTTGCCGGACCACACC
AAGCCCGTGGTGTGGTACTGCCGGATGTAGGCCTGCAGTTCGGTGAGCGT
CTG
BS05314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33979-PA | 1275 | capt-RA | 439..1275 | 853..17 | 4185 | 100 | Minus |
CG33979-PB | 2352 | capt-RB | 1516..2352 | 853..17 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RC | 2422 | CG33979-RC | 1232..2068 | 853..17 | 4185 | 100 | Minus |
capt-RA | 2040 | CG33979-RA | 850..1686 | 853..17 | 4185 | 100 | Minus |
capt-RB | 3049 | CG33979-RB | 1859..2695 | 853..17 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1152177..1152701 | 101..625 | 2625 | 100 | Plus |
2L | 23513712 | 2L | 1152770..1152999 | 624..853 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 1152032..1152115 | 17..100 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:14:36 has no hits.
BS05314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:43 Download gff for
BS05314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1516..2352 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:05 Download gff for
BS05314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1516..2352 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:38 Download gff for
BS05314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1859..2704 | 8..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:00 Download gff for
BS05314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1859..2704 | 8..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:00 Download gff for
BS05314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1152023..1152115 | 8..100 | 95 | <- | Plus |
2L | 1152771..1152999 | 625..853 | 100 | | Plus |
2L | 1152177..1152700 | 101..624 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:38 Download gff for
BS05314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1152023..1152115 | 8..100 | 95 | <- | Plus |
arm_2L | 1152177..1152700 | 101..624 | 100 | <- | Plus |
arm_2L | 1152771..1152999 | 625..853 | 100 | | Plus |
BS05314.5prime Sequence
838 bp (690 high quality bases) assembled on 2005-12-02
> BS05314.5prime
GAAGTTATCAGTCGACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGG
GTCCGCTGAGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTG
GCGCAGCATGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTA
CGTGACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGG
AGCTTCTGAAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGC
GAGAAGCACCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGA
AAGCATTCCCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCT
ATGTCAAGGAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTC
AAGGAGTGGAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTG
GGTGCAGACGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCA
CGGGCTTGGTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCG
CCACCACCGCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCT
GAGTGCCCTCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCCTCTTCG
CCCAGATCAACCAGGGTGCCGACATCACCAAGGGCTTGAAGAACGTCACT
GGCGACATGCAGACCCATAAAAATCCATCTCTACGCACTGGACCGGCTCC
GTTCAAATCGCCAGCCCAGTCGGGCGGCAGCAAGGCCGTTGCTGCTCCAT
CAGCTGCGCAAGCCAAGGCGCCCGTTTTCGAGCGCGAC
BS05314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33979-PB | 2352 | capt-RB | 1076..1899 | 15..838 | 4095 | 99.8 | Plus |
CG33979-PA | 1275 | capt-RA | 1..822 | 17..838 | 4085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RC | 2422 | CG33979-RC | 792..1615 | 15..838 | 4105 | 99.9 | Plus |
capt-RA | 2040 | CG33979-RA | 410..1233 | 15..838 | 4105 | 99.9 | Plus |
capt-RB | 3049 | CG33979-RB | 1419..2242 | 15..838 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1152770..1153319 | 684..135 | 2750 | 100 | Minus |
2L | 23513712 | 2L | 1152546..1152701 | 838..683 | 765 | 99.4 | Minus |
2L | 23513712 | 2L | 1153386..1153506 | 135..15 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:19:56 has no hits.
BS05314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:44 Download gff for
BS05314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1071..1899 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:06 Download gff for
BS05314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1071..1899 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:50:03 Download gff for
BS05314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1414..2242 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:15 Download gff for
BS05314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1414..2242 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:15 Download gff for
BS05314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1152546..1152700 | 684..838 | 99 | <- | Minus |
2L | 1152771..1153318 | 136..683 | 100 | <- | Minus |
2L | 1153386..1153511 | 9..135 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:50:03 Download gff for
BS05314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1152546..1152700 | 684..838 | 99 | <- | Minus |
arm_2L | 1152771..1153318 | 136..683 | 100 | <- | Minus |
arm_2L | 1153386..1153511 | 9..135 | 98 | | Minus |
BS05314.complete Sequence
1307 bp assembled on 2007-10-17
GenBank Submission: FJ635095
> BS05314.complete
GAAGTTATCAGTCGACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGG
GTCCGCTGAGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTG
GCGCAGCATGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTA
CGTGACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGG
AGCTTCTGAAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGC
GAGAAGCACCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGA
AAGCATTCCCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCT
ATGTCAAGGAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTC
AAGGAGTGGAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTG
GGTGCAGACGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCA
CGGGCTTGGTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCG
CCACCACCGCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCT
GAGTGCCCTCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCCTCTTCG
CCCAGATCAACCAGGGTGCCGACATCACCAAGGGCTTGAAGAAGGTCACT
GGCGACATGCAGACCCATAAAAATCCATCTCTACGCACTGGACCGGCTCC
GTTCAAATCGCCAGCCCAGTCGGGCGGCAGCAAGGCCGTTGCTGCTCCAT
CAGCTGCGCAAGCCAAGGCGCCCGTTTTCGAGCGCGACGGAAAGAAGTGG
ATCATCGAGTACCAGAAGAACAACACCGGGCTGTTGGTGGAGAACGCCGA
GATGAACAACGTGGTGTATGTGTTCAAGTGTGAGGGATCCACTCTGACCG
TCAAGGGCAAGGTGAACAACATCGTCTTCGACTCCTGCAAGAAGTGCTCC
CTGCTGTTCGATTCCGTGGTGGCCTCCGTGGAGTTCGTCAACTGCCAGAG
CGTGCAGATGCAGGTGCTCGGCTCGGTGCCGACGGTATCGATCGACAAGA
CCGACGGCTGCCAGATGTATCTGTCCAAGGACTCGCTGGGCGTGGAGATC
GTCAACTCCAAGTCCTCGGAGATGAACATCCTGTTGCCCGACGACAGCGG
CGATTATACCGAGTTGGCTTTACCGGAGCAGTATAAGACCACGATTGCCG
GCAAGACCCTGAAGACTGTGTGCGTGGACAGCCTCGGCTAAAAGCTTTCT
AGACCAT
BS05314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RB | 2352 | CG33979-PB | 1076..2352 | 15..1291 | 6385 | 100 | Plus |
capt-RC | 1275 | CG33979-PC | 1..1275 | 17..1291 | 6375 | 100 | Plus |
capt-RA | 1275 | CG33979-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RC | 2422 | CG33979-RC | 792..2068 | 15..1291 | 6385 | 100 | Plus |
capt-RA | 2040 | CG33979-RA | 410..1686 | 15..1291 | 6385 | 100 | Plus |
capt-RB | 3049 | CG33979-RB | 1419..2695 | 15..1291 | 6385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1152770..1153319 | 684..135 | 2750 | 100 | Minus |
2L | 23513712 | 2L | 1152177..1152701 | 1207..683 | 2625 | 100 | Minus |
2L | 23513712 | 2L | 1153386..1153506 | 135..15 | 605 | 100 | Minus |
2L | 23513712 | 2L | 1152032..1152115 | 1291..1208 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:23:53 has no hits.
BS05314.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:43 Download gff for
BS05314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1071..2352 | 9..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:47 Download gff for
BS05314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1409..2699 | 9..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:15 Download gff for
BS05314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1421..2693 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:46 Download gff for
BS05314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1416..2688 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:37 Download gff for
BS05314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1421..2693 | 17..1289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:37 Download gff for
BS05314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1153386..1153504 | 17..135 | 100 | | Minus |
2L | 1152034..1152115 | 1208..1289 | 100 | <- | Minus |
2L | 1152177..1152700 | 684..1207 | 100 | <- | Minus |
2L | 1152771..1153318 | 136..683 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:15 Download gff for
BS05314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1152034..1152115 | 1208..1289 | 100 | <- | Minus |
arm_2L | 1152177..1152700 | 684..1207 | 100 | <- | Minus |
arm_2L | 1152771..1153318 | 136..683 | 100 | <- | Minus |
arm_2L | 1153386..1153504 | 17..135 | 100 | | Minus |
BS05314.pep Sequence
Translation from 16 to 1290
> BS05314.pep
MSVAGFEDIVAGPLSQYLTLSAKIGGDVAQHAELVKSAFGSQLQYVTLAT
QIAQPAQPKQAELLKPTSTQISAIQDFREKHRSSPFFNHLSAISESIPAL
GWVCVEKTPGPYVKEMNDAGQFYTNRVLKEWKEKDVTHVEWARAWVQTLT
ELQAYIRQYHTTGLVWSGKGAAPAGGAPPPPPPGGLPPPPPMLDLSALKL
DSAGDDRSALFAQINQGADITKGLKKVTGDMQTHKNPSLRTGPAPFKSPA
QSGGSKAVAAPSAAQAKAPVFERDGKKWIIEYQKNNTGLLVENAEMNNVV
YVFKCEGSTLTVKGKVNNIVFDSCKKCSLLFDSVVASVEFVNCQSVQMQV
LGSVPTVSIDKTDGCQMYLSKDSLGVEIVNSKSSEMNILLPDDSGDYTEL
ALPEQYKTTIAGKTLKTVCVDSLG*
BS05314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-PC | 424 | CG33979-PC | 1..424 | 1..424 | 2200 | 100 | Plus |
capt-PA | 424 | CG33979-PA | 1..424 | 1..424 | 2200 | 100 | Plus |
capt-PB | 783 | CG33979-PB | 360..783 | 1..424 | 2200 | 100 | Plus |