Clone Sequence Records
BS05320.3prime Sequence
477 bp (476 high quality bases) assembled on 2005-12-02
> BS05320.3prime
ATGGTCTAGAAAGCTTTCACTGATACGCGTTCAGATTCTTTTTGGGCAAG
ATGATGTTGTAATGCTGGAATTTGGTCCAAGACAGCAGTATGTCCTTCGT
CCTGCCGTGCGGCGCCTCCCCAAAAGTCTTGCAGCACCCGTAAATTTTCA
TTACTTTCTTGTCCTCCTTGTTGCTGATGAACCCTCCACCCAGGCATTTG
GCGCAAATTCCAATTTTGTCCATCTCCTTTTGGATTTCCTCAAAGATTTC
CTCGTGGTCCTTGGAGGCGGATCCTCTTACAATGGTCCTGCCGAACCTAG
TTAAACCGTGCATGTGAATCATCATCAAAAGGTACTTGTTCTTGCCTTTA
GAAAGCTGAACTCTAGGAACATTTATCAAAAGGGCGTTTACGCGCGAAGA
ACTTTGCCTTCGAAGGGGCTTCAACAATTGTGAAACAGGTGCCAAAAGAT
TCAAGGTTTTCATGTCGACTGATAACT
BS05320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7929-PA | 447 | ocn-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-RA | 619 | CG7929-RA | 86..533 | 463..16 | 2240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30037435..30037645 | 253..463 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 30037256..30037381 | 128..253 | 630 | 100 | Plus |
3R | 32079331 | 3R | 30037089..30037202 | 16..129 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:15:26 has no hits.
BS05320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:52 Download gff for
BS05320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:16 Download gff for
BS05320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7929-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:45 Download gff for
BS05320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..542 | 5..463 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:54 Download gff for
BS05320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..542 | 5..463 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:54 Download gff for
BS05320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30037080..30037200 | 5..127 | 96 | <- | Plus |
3R | 30037256..30037380 | 128..252 | 100 | <- | Plus |
3R | 30037435..30037645 | 253..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:45 Download gff for
BS05320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25862802..25862922 | 5..127 | 96 | <- | Plus |
arm_3R | 25862978..25863102 | 128..252 | 100 | <- | Plus |
arm_3R | 25863157..25863367 | 253..463 | 100 | | Plus |
BS05320.5prime Sequence
477 bp (476 high quality bases) assembled on 2005-12-02
> BS05320.5prime
GAAGTTATCAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCAC
AATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTT
TTGATAAATGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCT
TTTGATGATGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTG
TAAGAGGATCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAA
AAGGAGATGGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTT
CATCAGCAACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCA
AGACTTTTGGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCT
TGGACCAAATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAA
CGCGTATCAGTGAAAGCTTTCTAGACC
BS05320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7929-PA | 447 | ocn-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-RA | 619 | CG7929-RA | 86..533 | 17..464 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30037435..30037645 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 30037256..30037381 | 352..227 | 630 | 100 | Minus |
3R | 32079331 | 3R | 30037089..30037202 | 464..351 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:00:12 has no hits.
BS05320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:54 Download gff for
BS05320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:18 Download gff for
BS05320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7929-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:39 Download gff for
BS05320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..542 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:23 Download gff for
BS05320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..542 | 17..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:23 Download gff for
BS05320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30037435..30037645 | 17..227 | 100 | | Minus |
3R | 30037080..30037200 | 353..475 | 96 | <- | Minus |
3R | 30037256..30037380 | 228..352 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:39 Download gff for
BS05320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25862802..25862922 | 353..475 | 96 | <- | Minus |
arm_3R | 25862978..25863102 | 228..352 | 100 | <- | Minus |
arm_3R | 25863157..25863367 | 17..227 | 100 | | Minus |
BS05320.complete Sequence
479 bp (479 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635096
> BS05320.complete
GAAGTTATCAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCAC
AATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTT
TTGATAAATGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCT
TTTGATGATGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTG
TAAGAGGATCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAA
AAGGAGATGGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTT
CATCAGCAACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCA
AGACTTTTGGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCT
TGGACCAAATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAA
CGCGTATCAGTGAAAGCTTTCTAGACCAT
BS05320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-RA | 447 | CG7929-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-RA | 619 | CG7929-RA | 86..533 | 17..464 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30037435..30037645 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 30037256..30037381 | 352..227 | 630 | 100 | Minus |
3R | 32079331 | 3R | 30037089..30037202 | 464..351 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:37:08 has no hits.
BS05320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:12 Download gff for
BS05320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:12 Download gff for
BS05320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..542 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:02 Download gff for
BS05320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..531 | 17..462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:12 Download gff for
BS05320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..542 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:13 Download gff for
BS05320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..531 | 17..462 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:13 Download gff for
BS05320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30037091..30037200 | 353..462 | 100 | <- | Minus |
3R | 30037256..30037380 | 228..352 | 100 | <- | Minus |
3R | 30037435..30037645 | 17..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:02 Download gff for
BS05320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25862813..25862922 | 353..462 | 100 | <- | Minus |
arm_3R | 25862978..25863102 | 228..352 | 100 | <- | Minus |
arm_3R | 25863157..25863367 | 17..227 | 100 | | Minus |
BS05320.pep Sequence
Translation from 16 to 462
> BS05320.pep
MKTLNLLAPVSQLLKPLRRQSSSRVNALLINVPRVQLSKGKNKYLLMMIH
MHGLTRFGRTIVRGSASKDHEEIFEEIQKEMDKIGICAKCLGGGFISNKE
DKKVMKIYGCCKTFGEAPHGRTKDILLSWTKFQHYNIILPKKNLNAYQ*
BS05320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-PA | 148 | CG7929-PA | 1..148 | 1..148 | 773 | 100 | Plus |
janB-PA | 140 | CG7931-PA | 1..136 | 1..137 | 306 | 43.1 | Plus |
CG18662-PA | 146 | CG18662-PA | 8..128 | 7..126 | 187 | 28.9 | Plus |
janA-PB | 135 | CG7933-PB | 1..128 | 4..137 | 161 | 33.8 | Plus |
janA-PA | 119 | CG7933-PA | 6..112 | 29..137 | 158 | 36.9 | Plus |