Clone BS05320 Report

Search the DGRC for BS05320

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:53
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptocn-RA
Protein status:BS05320.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05320.3prime Sequence

477 bp (476 high quality bases) assembled on 2005-12-02

> BS05320.3prime
ATGGTCTAGAAAGCTTTCACTGATACGCGTTCAGATTCTTTTTGGGCAAG
ATGATGTTGTAATGCTGGAATTTGGTCCAAGACAGCAGTATGTCCTTCGT
CCTGCCGTGCGGCGCCTCCCCAAAAGTCTTGCAGCACCCGTAAATTTTCA
TTACTTTCTTGTCCTCCTTGTTGCTGATGAACCCTCCACCCAGGCATTTG
GCGCAAATTCCAATTTTGTCCATCTCCTTTTGGATTTCCTCAAAGATTTC
CTCGTGGTCCTTGGAGGCGGATCCTCTTACAATGGTCCTGCCGAACCTAG
TTAAACCGTGCATGTGAATCATCATCAAAAGGTACTTGTTCTTGCCTTTA
GAAAGCTGAACTCTAGGAACATTTATCAAAAGGGCGTTTACGCGCGAAGA
ACTTTGCCTTCGAAGGGGCTTCAACAATTGTGAAACAGGTGCCAAAAGAT
TCAAGGTTTTCATGTCGACTGATAACT

BS05320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7929-PA 447 ocn-RA 1..447 463..17 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-RA 619 CG7929-RA 86..533 463..16 2240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30037435..30037645 253..463 1055 100 Plus
3R 32079331 3R 30037256..30037381 128..253 630 100 Plus
3R 32079331 3R 30037089..30037202 16..129 570 100 Plus
Blast to na_te.dros performed on 2015-02-13 14:15:26 has no hits.

BS05320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:52 Download gff for BS05320.3prime
Subject Subject Range Query Range Percent Splice Strand
ocn-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:16 Download gff for BS05320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7929-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:45 Download gff for BS05320.3prime
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..542 5..463 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:54 Download gff for BS05320.3prime
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..542 5..463 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:54 Download gff for BS05320.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30037080..30037200 5..127 96 <- Plus
3R 30037256..30037380 128..252 100 <- Plus
3R 30037435..30037645 253..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:45 Download gff for BS05320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25862802..25862922 5..127 96 <- Plus
arm_3R 25862978..25863102 128..252 100 <- Plus
arm_3R 25863157..25863367 253..463 100   Plus

BS05320.5prime Sequence

477 bp (476 high quality bases) assembled on 2005-12-02

> BS05320.5prime
GAAGTTATCAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCAC
AATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTT
TTGATAAATGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCT
TTTGATGATGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTG
TAAGAGGATCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAA
AAGGAGATGGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTT
CATCAGCAACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCA
AGACTTTTGGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCT
TGGACCAAATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAA
CGCGTATCAGTGAAAGCTTTCTAGACC

BS05320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7929-PA 447 ocn-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-RA 619 CG7929-RA 86..533 17..464 2240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30037435..30037645 227..17 1055 100 Minus
3R 32079331 3R 30037256..30037381 352..227 630 100 Minus
3R 32079331 3R 30037089..30037202 464..351 570 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:00:12 has no hits.

BS05320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:07:54 Download gff for BS05320.5prime
Subject Subject Range Query Range Percent Splice Strand
ocn-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:18 Download gff for BS05320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7929-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:39 Download gff for BS05320.5prime
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..542 17..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:23 Download gff for BS05320.5prime
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..542 17..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:23 Download gff for BS05320.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30037435..30037645 17..227 100   Minus
3R 30037080..30037200 353..475 96 <- Minus
3R 30037256..30037380 228..352 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:39 Download gff for BS05320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25862802..25862922 353..475 96 <- Minus
arm_3R 25862978..25863102 228..352 100 <- Minus
arm_3R 25863157..25863367 17..227 100   Minus

BS05320.complete Sequence

479 bp (479 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635096

> BS05320.complete
GAAGTTATCAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCAC
AATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTT
TTGATAAATGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCT
TTTGATGATGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTG
TAAGAGGATCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAA
AAGGAGATGGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTT
CATCAGCAACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCA
AGACTTTTGGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCT
TGGACCAAATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAA
CGCGTATCAGTGAAAGCTTTCTAGACCAT

BS05320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-RA 447 CG7929-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-RA 619 CG7929-RA 86..533 17..464 2240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30037435..30037645 227..17 1055 100 Minus
3R 32079331 3R 30037256..30037381 352..227 630 100 Minus
3R 32079331 3R 30037089..30037202 464..351 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:37:08 has no hits.

BS05320.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:12 Download gff for BS05320.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:12 Download gff for BS05320.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..542 17..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:02 Download gff for BS05320.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..531 17..462 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:12 Download gff for BS05320.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..542 17..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:13 Download gff for BS05320.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..531 17..462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:13 Download gff for BS05320.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30037091..30037200 353..462 100 <- Minus
3R 30037256..30037380 228..352 100 <- Minus
3R 30037435..30037645 17..227 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:02 Download gff for BS05320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25862813..25862922 353..462 100 <- Minus
arm_3R 25862978..25863102 228..352 100 <- Minus
arm_3R 25863157..25863367 17..227 100   Minus

BS05320.pep Sequence

Translation from 16 to 462

> BS05320.pep
MKTLNLLAPVSQLLKPLRRQSSSRVNALLINVPRVQLSKGKNKYLLMMIH
MHGLTRFGRTIVRGSASKDHEEIFEEIQKEMDKIGICAKCLGGGFISNKE
DKKVMKIYGCCKTFGEAPHGRTKDILLSWTKFQHYNIILPKKNLNAYQ*

BS05320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-PA 148 CG7929-PA 1..148 1..148 773 100 Plus
janB-PA 140 CG7931-PA 1..136 1..137 306 43.1 Plus
CG18662-PA 146 CG18662-PA 8..128 7..126 187 28.9 Plus
janA-PB 135 CG7933-PB 1..128 4..137 161 33.8 Plus
janA-PA 119 CG7933-PA 6..112 29..137 158 36.9 Plus