Clone BS05330 Report

Search the DGRC for BS05330

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:53
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG8611-RA
Protein status:BS05330.pep: full length peptide match
Sequenced Size:2957

Clone Sequence Records

BS05330.3prime Sequence

873 bp (784 high quality bases) assembled on 2005-12-02

> BS05330.3prime
ATGGTCTAGAAAGCTTCTACGCCTGCTTGCGTCGCTTGGCGGCTCCCTCC
GGTGGCAGTCCGCTGTCGAACTCGGACATATTCAGCGCCCTCGATTTGCC
CAGGCTCTTCATGAAGCTGCTGCGTCCCACTCCGCCGCCAATGAAACCAC
CCTTGGGTGGTGGGGCTCCTGGCTTCTGCGCTCCTACGTCCCGCTGCTGC
AGCTGTCGCACCTCCCCGCTGACCGTCGTCGTGAATCGCCGCTTGGCCCG
CTTCTGGGCCTGGATCTTCTCGGGATCTCTCTCCGTGTAGGTCAGTCGGT
TGGTGGGCGGGGCCGCCTTGGGGGCGGCGTGCTTGGCGGCGAACTTTGAG
GGCGCCTCCTTGAGCGCAAAGCTCTTGGCGAAGTGGCCCATGTGGGCGAT
GCGCACGTTGAAGATGGGCTTCAGCTCCTTGGGAAACGTCGAGTAGAACT
TCATCCAGGACACAAAGGCTTTGCAGGACTTGTCGTGTAGTTCGCGATCA
TCCTCGAGCAGCGTCTGGAACTTGTGCTGCAGATTGGAGGCCGCCTCCTG
CACCGTCCTGGCCTCATCGTCCTTGGGCAGCAGGGTCTGCAGGTAGGCGT
ACATGTCGCCCTGCTGGATGCGGATGCGCTTCTTCTCCAGATGCCGCACG
AACTGGGCCTCGCTGGGCGTCAGGAAGAGCACGGCTCTGCCCTTTCGGCC
CGCTCGAGCCGTTCGACCCACGCGGTGAACAAAATCGGCGGTGGTTTGCG
GCGGCGTGTACTGCACCACCAGTTTTATGTCGGGAACATCGATGCCACGA
CCCACCACATCGGTGGCCAGCAGGACGCAGCTGGCGCAATCGCGGAAGCC
CACGAAAACGCCCTGCCGTTCCG

BS05330.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8611-PA 2925 CG8611-RA 2092..2925 850..17 4170 100 Minus
CG8611-PB 2928 CG8611-RB 2095..2928 850..17 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8611-RB 4145 CG8611-RB 2175..3031 873..17 4240 99.8 Minus
CG8611-RA 3614 CG8611-RA 2172..3028 873..17 4240 99.8 Minus
CG8611-RC 3917 CG8611-RC 2879..3331 469..17 2265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17419448..17419852 469..873 1965 99 Plus
X 23542271 X 17414381..17414644 17..280 1320 100 Plus
X 23542271 X 17414970..17415161 279..470 960 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:10:32 has no hits.

BS05330.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:13 Download gff for BS05330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-PB 2072..2928 17..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:45 Download gff for BS05330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-PB 2072..2928 17..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:55:02 Download gff for BS05330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-RA 2172..3028 17..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:51 Download gff for BS05330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-RA 2172..3028 17..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:51 Download gff for BS05330.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17414970..17415159 279..468 100 <- Plus
X 17414381..17414642 17..278 100 <- Plus
X 17419448..17419852 469..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:55:02 Download gff for BS05330.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17308414..17308675 17..278 100 <- Plus
arm_X 17309003..17309192 279..468 100 <- Plus
arm_X 17313481..17313885 469..873 99   Plus

BS05330.5prime Sequence

842 bp (815 high quality bases) assembled on 2005-12-02

> BS05330.5prime
GAAGTTATCAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAA
AGTCGTCGGCTCGGAAAAATCAACAGTCGCCCGCGCTTTCGGTTAAAAAA
CGTGCACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCC
CAAAGTCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTG
AACCTACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCA
GTTTCCTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGC
AAATGCATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCAC
CTGTTAAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAG
CCGGTGGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATT
GGGCAAGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGC
AGATCACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAA
TTACCCACGCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCG
GCAAAAGCGTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATG
AGGAGGATGCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCG
AGTTCAGCCGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTCCGG
CGAATCCGGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCA
GTGCACAATCTCCTGGACAAGAAAAGGAACCCCAACAAACCG

BS05330.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8611-PA 2925 CG8611-RA 1..826 17..842 4105 99.8 Plus
CG8611-PB 2928 CG8611-RB 61..829 74..842 3820 99.8 Plus
CG8611-PB 2928 CG8611-RB 1..60 17..76 300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8611-RA 3614 CG8611-RA 104..929 17..842 4115 99.9 Plus
CG8611-RC 3917 CG8611-RC 104..932 17..842 4075 99.5 Plus
CG8611-RB 4145 CG8611-RB 104..932 17..842 4075 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17421155..17421927 842..70 3835 99.7 Minus
X 23542271 X 17421983..17422042 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:14:11 has no hits.

BS05330.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:14 Download gff for BS05330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-PA 1..826 17..842 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:46 Download gff for BS05330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-PA 1..826 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:58:29 Download gff for BS05330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-RA 104..929 17..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:42:41 Download gff for BS05330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8611-RA 104..929 17..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:42:41 Download gff for BS05330.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17421155..17421920 77..842 99 <- Minus
X 17421983..17422042 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:58:29 Download gff for BS05330.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17315188..17315953 77..842 99 <- Minus
arm_X 17316016..17316075 17..76 100   Minus

BS05330.complete Sequence

2957 bp assembled on 2010-05-10

GenBank Submission: KX794659

> BS05330.complete
GAAGTTATCAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAA
AGTCGTCGGCTCGGAAAAATCAACAGTCGCCCGCGCTTTCGGTTAAAAAA
CGTGCACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCC
CAAAGTCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTG
AACCTACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCA
GTTTCCTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGC
AAATGCATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCAC
CTGTTAAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAG
CCGGTGGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATT
GGGCAAGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGC
AGATCACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAA
TTACCCACGCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCG
GCAAAAGCGTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATG
AGGAGGATGCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCG
AGTTCAGCCGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTCCGG
CGAATCCGGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCA
GTGCACAATCTCCTGGACAAGAAAAGGAACCCAAACAAACCGCGAAGAAA
CCACCGAAAGCCGAGGAAACCTCGTCCACAAACCGTTTTCGCACCAAGAA
GATCGGCCTCTTCGACCAAAGCGACGTGGAGGCACTCAAGCAACTGGGCC
AAAGAGCGGTGAAGCCCGTCAAGGAGACCATCTTTACAGGCTCTAAAATA
TCCACGTTGGGACTGCATCCTCATGCTGTAAAGAACTTGGAGGATCTGCT
TAGCATTCGAGAGCTAACTAGCGTGCAGCAGAAGACCATTCCCGAAGTTC
TCCAGGGCAAGGATGTGCTCGTACGTTCGCAGACGGGCTCGGGAAAGACC
CTGGCATATGCTCTACCCTTGGTGGAACTGTTGCAGAAACAGCAGCCACG
GATACAGCGAAAGGATGGCGTGCTGGCCCTGGTGATTGTACCCACCAGGG
AGCTGGTGATGCAGACATACGAACTCATCCAGAAGCTGGTCAAGCCGTAC
ACATGGATAGTGCCCGGTTCTTTGCTGGGTGGCGAGAGCAGGAAAAGCGA
AAAGGCCAGGCTAAGAAAGGGCATCAACATACTGATAGGCACACCTGGTC
GTCTGGTGGATCACCTGCTGCACACGGCCTCCTTCAAGCTGACCAAACTG
CAGTTCCTCATACTGGACGAAGCAGATCGCCTGCTGGAGCTGGGCTACGA
ACGCGATGTCAAGCAGTTGGTGGAGGCCATTGACAAGCAGCGTGCGGAGT
GCGAGGACAAGGAGCTTCCCCAGCTGCAAAGGATGCTGCTGAGTGCCACT
TTGACTTCGCAGGTCCAACAGCTGGCCGGTTTGACCCTCAAGAATCCCCT
GTACATAGACAACAGCGACGAGGCGGCGAGTGCGGCGCTGAAGAGCAAGG
ATGGCTACCAAAAGGAGACCATAGAAGCCTTGCTAGAGGTGGACGACGGA
CTGGGCGAGTACCAGGAGGATGTGACGGGTGTGCTGAGTATTCCCGAGAA
CCTGCAGCTCAGCTATGTGGTGGTGCCGCCAAAACTACGTCTGGTGGCAC
TGTCTTCGCTGCTGGCCAAGGAAGTGGACGCCAGTCCCAAGCAGTTCAAG
GCGATTGTGTTCATGAGCACCACGGAGATGGTGAACTTCCATCACGACAT
GCTCAACGAGGCGTTGACCAGGCGAGTTCTCGACGAGGAGGACGAGCAGG
AGAAAGGTGATTCGGATGACGACGGCGACATACCTTTACTGCAGGGTCTG
CGCTTCTTCAAACTACATGGCTCCATGACGCAGACGGAACGGCAGGGCGT
TTTTCGTGGCTTCCGCGATTGCGCCAGCTGCGTCCTGCTGGCCACCGATG
TGGTGGGTCGTGGCATCGATGTTCCCGACATAAAACTGGTGGTGCAGTAC
ACGCCGCCGCAAACCACCGCCGATTTTGTTCACCGCGTGGGTCGAACGGC
TCGAGCGGGCCGAAAGGGCAGAGCCGTGCTCTTCCTGACGCCCAGCGAGG
CCCAGTTCGTGCGGCATCTGGAGAAGAAGCGCATCCGCATCCAGCAGGGC
GACATGTACGCCTACCTGCAGACCCTGCTGCCCAAGGACGATGAGGCCAG
GACGGTGCAGGAGGCGGCCTCCAATCTGCAGCACAAGTTCCAGACGCTGC
TCGAGGATGATCGCGAACTACACGACAAGTCCTGCAAAGCCTTTGTGTCC
TGGATGAAGTTCTACTCGACGTTTCCCAAGGAGCTGAAGCCCATCTTCAA
CGTGCGCATCGCCCACATGGGCCACTTCGCCAAGAGCTTTGCGCTCAAGG
AGGCGCCCTCAAAGTTCGCCGCCAAGCACGCCGCCCCCAAGGCGGCCCCG
CCCACCAACCGACTGACCTACACGGAGAGAGATCCCGAGAAGATCCAGGC
CCAGAAGCGGGCCAAGCGGCGATTCACGACGACGGTCAGCGGGGAGGTGC
GACAGCTGCAGCAGCGGGACGTAGGAGCGCAGAAGCCAGGAGCCCCACCA
CCCAAGGGTGGTTTCATTGGCGGCGGAGTGGGACGCAGCAGCTTCATGAA
GAGCCTGGGCAAATCGAGGGCGCTGAATATGTCCGAGTTCGACAGCGGAC
TGCCACCGGAGGGAGCCGCCAAGCGACGCAAGCAGGCGTAGAAGCTTTCT
AGACCAT

BS05330.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8611-RA 2925 CG8611-PA 1..2925 17..2941 14625 100 Plus
CG8611-RB 2928 CG8611-PB 1..2928 17..2941 14560 99.9 Plus
CG8611-RC 2487 CG8611-PC 1..2476 17..2489 12300 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8611-RA 3614 CG8611-RA 104..3028 17..2941 14625 100 Plus
CG8611-RB 4145 CG8611-RB 104..3031 17..2941 14560 99.9 Plus
CG8611-RC 3917 CG8611-RC 104..2579 17..2489 12300 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17419936..17421927 2061..70 9945 99.9 Minus
X 23542271 X 17419448..17419875 2489..2062 2140 100 Minus
X 23542271 X 17414381..17414644 2941..2678 1320 100 Minus
X 23542271 X 17414970..17415161 2679..2488 960 100 Minus
X 23542271 X 17421983..17422042 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:56:37 has no hits.

BS05330.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:42 Download gff for BS05330.complete
Subject Subject Range Query Range Percent Splice Strand
CG8611-RA 114..3038 17..2941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:26 Download gff for BS05330.complete
Subject Subject Range Query Range Percent Splice Strand
CG8611-RA 104..3028 17..2941 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:55 Download gff for BS05330.complete
Subject Subject Range Query Range Percent Splice Strand
CG8611-RA 104..3028 17..2941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:55 Download gff for BS05330.complete
Subject Subject Range Query Range Percent Splice Strand
X 17414381..17414642 2680..2941 100 <- Minus
X 17414970..17415159 2490..2679 100 <- Minus
X 17419448..17419875 2062..2489 100 <- Minus
X 17419936..17421920 77..2061 100 <- Minus
X 17421983..17422042 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:26 Download gff for BS05330.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17308414..17308675 2680..2941 100 <- Minus
arm_X 17309003..17309192 2490..2679 100 <- Minus
arm_X 17313481..17313908 2062..2489 100 <- Minus
arm_X 17313969..17315953 77..2061 100 <- Minus
arm_X 17316016..17316075 17..76 100   Minus

BS05330.pep Sequence

Translation from 16 to 2940

> BS05330.pep
MVENISLNVTVKSSARKNQQSPALSVKKRAQKSQDFDFQFNVDKPKVKAI
VVRRRAPPSKVEPTNSSVPNTTKSPTPSVSSSKSAISTLSASPKANASND
DLMFNVSPTKPPVKSVLGDDFMLNVTTKPVVAQKAKPKITRAERLGKKQR
QGKPLTKLSEEQITRALKSNKKPKNPNQLPTPGDLFRAQLEEERRQKRRE
EGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGEE
SATSDEEPDESSAQSPGQEKEPKQTAKKPPKAEETSSTNRFRTKKIGLFD
QSDVEALKQLGQRAVKPVKETIFTGSKISTLGLHPHAVKNLEDLLSIREL
TSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKD
GVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLR
KGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQ
LVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNS
DEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSY
VVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEAL
TRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFR
DCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRK
GRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLPKDDEARTVQEA
ASNLQHKFQTLLEDDRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIAH
MGHFAKSFALKEAPSKFAAKHAAPKAAPPTNRLTYTERDPEKIQAQKRAK
RRFTTTVSGEVRQLQQRDVGAQKPGAPPPKGGFIGGGVGRSSFMKSLGKS
RALNMSEFDSGLPPEGAAKRRKQA*

BS05330.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8611-PA 974 CG8611-PA 1..974 1..974 4908 100 Plus
CG8611-PB 975 CG8611-PB 1..975 1..974 4896 99.9 Plus
CG8611-PC 828 CG8611-PC 1..825 1..824 4118 99.9 Plus
pit-PC 680 CG6375-PC 11..645 138..883 689 27.4 Plus
pit-PA 680 CG6375-PA 11..645 138..883 689 27.4 Plus