Clone Sequence Records
BS05330.3prime Sequence
873 bp (784 high quality bases) assembled on 2005-12-02
> BS05330.3prime
ATGGTCTAGAAAGCTTCTACGCCTGCTTGCGTCGCTTGGCGGCTCCCTCC
GGTGGCAGTCCGCTGTCGAACTCGGACATATTCAGCGCCCTCGATTTGCC
CAGGCTCTTCATGAAGCTGCTGCGTCCCACTCCGCCGCCAATGAAACCAC
CCTTGGGTGGTGGGGCTCCTGGCTTCTGCGCTCCTACGTCCCGCTGCTGC
AGCTGTCGCACCTCCCCGCTGACCGTCGTCGTGAATCGCCGCTTGGCCCG
CTTCTGGGCCTGGATCTTCTCGGGATCTCTCTCCGTGTAGGTCAGTCGGT
TGGTGGGCGGGGCCGCCTTGGGGGCGGCGTGCTTGGCGGCGAACTTTGAG
GGCGCCTCCTTGAGCGCAAAGCTCTTGGCGAAGTGGCCCATGTGGGCGAT
GCGCACGTTGAAGATGGGCTTCAGCTCCTTGGGAAACGTCGAGTAGAACT
TCATCCAGGACACAAAGGCTTTGCAGGACTTGTCGTGTAGTTCGCGATCA
TCCTCGAGCAGCGTCTGGAACTTGTGCTGCAGATTGGAGGCCGCCTCCTG
CACCGTCCTGGCCTCATCGTCCTTGGGCAGCAGGGTCTGCAGGTAGGCGT
ACATGTCGCCCTGCTGGATGCGGATGCGCTTCTTCTCCAGATGCCGCACG
AACTGGGCCTCGCTGGGCGTCAGGAAGAGCACGGCTCTGCCCTTTCGGCC
CGCTCGAGCCGTTCGACCCACGCGGTGAACAAAATCGGCGGTGGTTTGCG
GCGGCGTGTACTGCACCACCAGTTTTATGTCGGGAACATCGATGCCACGA
CCCACCACATCGGTGGCCAGCAGGACGCAGCTGGCGCAATCGCGGAAGCC
CACGAAAACGCCCTGCCGTTCCG
BS05330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8611-PA | 2925 | CG8611-RA | 2092..2925 | 850..17 | 4170 | 100 | Minus |
CG8611-PB | 2928 | CG8611-RB | 2095..2928 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8611-RB | 4145 | CG8611-RB | 2175..3031 | 873..17 | 4240 | 99.8 | Minus |
CG8611-RA | 3614 | CG8611-RA | 2172..3028 | 873..17 | 4240 | 99.8 | Minus |
CG8611-RC | 3917 | CG8611-RC | 2879..3331 | 469..17 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17419448..17419852 | 469..873 | 1965 | 99 | Plus |
X | 23542271 | X | 17414381..17414644 | 17..280 | 1320 | 100 | Plus |
X | 23542271 | X | 17414970..17415161 | 279..470 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:10:32 has no hits.
BS05330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:13 Download gff for
BS05330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-PB | 2072..2928 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:45 Download gff for
BS05330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-PB | 2072..2928 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:55:02 Download gff for
BS05330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RA | 2172..3028 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:51 Download gff for
BS05330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RA | 2172..3028 | 17..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:51 Download gff for
BS05330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17414970..17415159 | 279..468 | 100 | <- | Plus |
X | 17414381..17414642 | 17..278 | 100 | <- | Plus |
X | 17419448..17419852 | 469..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:55:02 Download gff for
BS05330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17308414..17308675 | 17..278 | 100 | <- | Plus |
arm_X | 17309003..17309192 | 279..468 | 100 | <- | Plus |
arm_X | 17313481..17313885 | 469..873 | 99 | | Plus |
BS05330.5prime Sequence
842 bp (815 high quality bases) assembled on 2005-12-02
> BS05330.5prime
GAAGTTATCAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAA
AGTCGTCGGCTCGGAAAAATCAACAGTCGCCCGCGCTTTCGGTTAAAAAA
CGTGCACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCC
CAAAGTCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTG
AACCTACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCA
GTTTCCTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGC
AAATGCATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCAC
CTGTTAAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAG
CCGGTGGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATT
GGGCAAGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGC
AGATCACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAA
TTACCCACGCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCG
GCAAAAGCGTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATG
AGGAGGATGCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCG
AGTTCAGCCGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTCCGG
CGAATCCGGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCA
GTGCACAATCTCCTGGACAAGAAAAGGAACCCCAACAAACCG
BS05330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8611-PA | 2925 | CG8611-RA | 1..826 | 17..842 | 4105 | 99.8 | Plus |
CG8611-PB | 2928 | CG8611-RB | 61..829 | 74..842 | 3820 | 99.8 | Plus |
CG8611-PB | 2928 | CG8611-RB | 1..60 | 17..76 | 300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8611-RA | 3614 | CG8611-RA | 104..929 | 17..842 | 4115 | 99.9 | Plus |
CG8611-RC | 3917 | CG8611-RC | 104..932 | 17..842 | 4075 | 99.5 | Plus |
CG8611-RB | 4145 | CG8611-RB | 104..932 | 17..842 | 4075 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17421155..17421927 | 842..70 | 3835 | 99.7 | Minus |
X | 23542271 | X | 17421983..17422042 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:14:11 has no hits.
BS05330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:14 Download gff for
BS05330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-PA | 1..826 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:46 Download gff for
BS05330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-PA | 1..826 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:58:29 Download gff for
BS05330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RA | 104..929 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:42:41 Download gff for
BS05330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RA | 104..929 | 17..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:42:41 Download gff for
BS05330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17421155..17421920 | 77..842 | 99 | <- | Minus |
X | 17421983..17422042 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:58:29 Download gff for
BS05330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17315188..17315953 | 77..842 | 99 | <- | Minus |
arm_X | 17316016..17316075 | 17..76 | 100 | | Minus |
BS05330.complete Sequence
2957 bp assembled on 2010-05-10
GenBank Submission: KX794659
> BS05330.complete
GAAGTTATCAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAA
AGTCGTCGGCTCGGAAAAATCAACAGTCGCCCGCGCTTTCGGTTAAAAAA
CGTGCACAGAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCC
CAAAGTCAAGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTG
AACCTACAAATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCA
GTTTCCTCCAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGC
AAATGCATCCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCAC
CTGTTAAGAGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAG
CCGGTGGTTGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATT
GGGCAAGAAACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGC
AGATCACGCGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAA
TTACCCACGCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCG
GCAAAAGCGTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATG
AGGAGGATGCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCG
AGTTCAGCCGTTAAGGAGTCCAAAAAGTCATCAGATATTGAGGATTCCGG
CGAATCCGGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCA
GTGCACAATCTCCTGGACAAGAAAAGGAACCCAAACAAACCGCGAAGAAA
CCACCGAAAGCCGAGGAAACCTCGTCCACAAACCGTTTTCGCACCAAGAA
GATCGGCCTCTTCGACCAAAGCGACGTGGAGGCACTCAAGCAACTGGGCC
AAAGAGCGGTGAAGCCCGTCAAGGAGACCATCTTTACAGGCTCTAAAATA
TCCACGTTGGGACTGCATCCTCATGCTGTAAAGAACTTGGAGGATCTGCT
TAGCATTCGAGAGCTAACTAGCGTGCAGCAGAAGACCATTCCCGAAGTTC
TCCAGGGCAAGGATGTGCTCGTACGTTCGCAGACGGGCTCGGGAAAGACC
CTGGCATATGCTCTACCCTTGGTGGAACTGTTGCAGAAACAGCAGCCACG
GATACAGCGAAAGGATGGCGTGCTGGCCCTGGTGATTGTACCCACCAGGG
AGCTGGTGATGCAGACATACGAACTCATCCAGAAGCTGGTCAAGCCGTAC
ACATGGATAGTGCCCGGTTCTTTGCTGGGTGGCGAGAGCAGGAAAAGCGA
AAAGGCCAGGCTAAGAAAGGGCATCAACATACTGATAGGCACACCTGGTC
GTCTGGTGGATCACCTGCTGCACACGGCCTCCTTCAAGCTGACCAAACTG
CAGTTCCTCATACTGGACGAAGCAGATCGCCTGCTGGAGCTGGGCTACGA
ACGCGATGTCAAGCAGTTGGTGGAGGCCATTGACAAGCAGCGTGCGGAGT
GCGAGGACAAGGAGCTTCCCCAGCTGCAAAGGATGCTGCTGAGTGCCACT
TTGACTTCGCAGGTCCAACAGCTGGCCGGTTTGACCCTCAAGAATCCCCT
GTACATAGACAACAGCGACGAGGCGGCGAGTGCGGCGCTGAAGAGCAAGG
ATGGCTACCAAAAGGAGACCATAGAAGCCTTGCTAGAGGTGGACGACGGA
CTGGGCGAGTACCAGGAGGATGTGACGGGTGTGCTGAGTATTCCCGAGAA
CCTGCAGCTCAGCTATGTGGTGGTGCCGCCAAAACTACGTCTGGTGGCAC
TGTCTTCGCTGCTGGCCAAGGAAGTGGACGCCAGTCCCAAGCAGTTCAAG
GCGATTGTGTTCATGAGCACCACGGAGATGGTGAACTTCCATCACGACAT
GCTCAACGAGGCGTTGACCAGGCGAGTTCTCGACGAGGAGGACGAGCAGG
AGAAAGGTGATTCGGATGACGACGGCGACATACCTTTACTGCAGGGTCTG
CGCTTCTTCAAACTACATGGCTCCATGACGCAGACGGAACGGCAGGGCGT
TTTTCGTGGCTTCCGCGATTGCGCCAGCTGCGTCCTGCTGGCCACCGATG
TGGTGGGTCGTGGCATCGATGTTCCCGACATAAAACTGGTGGTGCAGTAC
ACGCCGCCGCAAACCACCGCCGATTTTGTTCACCGCGTGGGTCGAACGGC
TCGAGCGGGCCGAAAGGGCAGAGCCGTGCTCTTCCTGACGCCCAGCGAGG
CCCAGTTCGTGCGGCATCTGGAGAAGAAGCGCATCCGCATCCAGCAGGGC
GACATGTACGCCTACCTGCAGACCCTGCTGCCCAAGGACGATGAGGCCAG
GACGGTGCAGGAGGCGGCCTCCAATCTGCAGCACAAGTTCCAGACGCTGC
TCGAGGATGATCGCGAACTACACGACAAGTCCTGCAAAGCCTTTGTGTCC
TGGATGAAGTTCTACTCGACGTTTCCCAAGGAGCTGAAGCCCATCTTCAA
CGTGCGCATCGCCCACATGGGCCACTTCGCCAAGAGCTTTGCGCTCAAGG
AGGCGCCCTCAAAGTTCGCCGCCAAGCACGCCGCCCCCAAGGCGGCCCCG
CCCACCAACCGACTGACCTACACGGAGAGAGATCCCGAGAAGATCCAGGC
CCAGAAGCGGGCCAAGCGGCGATTCACGACGACGGTCAGCGGGGAGGTGC
GACAGCTGCAGCAGCGGGACGTAGGAGCGCAGAAGCCAGGAGCCCCACCA
CCCAAGGGTGGTTTCATTGGCGGCGGAGTGGGACGCAGCAGCTTCATGAA
GAGCCTGGGCAAATCGAGGGCGCTGAATATGTCCGAGTTCGACAGCGGAC
TGCCACCGGAGGGAGCCGCCAAGCGACGCAAGCAGGCGTAGAAGCTTTCT
AGACCAT
BS05330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8611-RA | 2925 | CG8611-PA | 1..2925 | 17..2941 | 14625 | 100 | Plus |
CG8611-RB | 2928 | CG8611-PB | 1..2928 | 17..2941 | 14560 | 99.9 | Plus |
CG8611-RC | 2487 | CG8611-PC | 1..2476 | 17..2489 | 12300 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8611-RA | 3614 | CG8611-RA | 104..3028 | 17..2941 | 14625 | 100 | Plus |
CG8611-RB | 4145 | CG8611-RB | 104..3031 | 17..2941 | 14560 | 99.9 | Plus |
CG8611-RC | 3917 | CG8611-RC | 104..2579 | 17..2489 | 12300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17419936..17421927 | 2061..70 | 9945 | 99.9 | Minus |
X | 23542271 | X | 17419448..17419875 | 2489..2062 | 2140 | 100 | Minus |
X | 23542271 | X | 17414381..17414644 | 2941..2678 | 1320 | 100 | Minus |
X | 23542271 | X | 17414970..17415161 | 2679..2488 | 960 | 100 | Minus |
X | 23542271 | X | 17421983..17422042 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:56:37 has no hits.
BS05330.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:42 Download gff for
BS05330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RA | 114..3038 | 17..2941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:26 Download gff for
BS05330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RA | 104..3028 | 17..2941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:55 Download gff for
BS05330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8611-RA | 104..3028 | 17..2941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:55 Download gff for
BS05330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17414381..17414642 | 2680..2941 | 100 | <- | Minus |
X | 17414970..17415159 | 2490..2679 | 100 | <- | Minus |
X | 17419448..17419875 | 2062..2489 | 100 | <- | Minus |
X | 17419936..17421920 | 77..2061 | 100 | <- | Minus |
X | 17421983..17422042 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:26 Download gff for
BS05330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17308414..17308675 | 2680..2941 | 100 | <- | Minus |
arm_X | 17309003..17309192 | 2490..2679 | 100 | <- | Minus |
arm_X | 17313481..17313908 | 2062..2489 | 100 | <- | Minus |
arm_X | 17313969..17315953 | 77..2061 | 100 | <- | Minus |
arm_X | 17316016..17316075 | 17..76 | 100 | | Minus |
BS05330.pep Sequence
Translation from 16 to 2940
> BS05330.pep
MVENISLNVTVKSSARKNQQSPALSVKKRAQKSQDFDFQFNVDKPKVKAI
VVRRRAPPSKVEPTNSSVPNTTKSPTPSVSSSKSAISTLSASPKANASND
DLMFNVSPTKPPVKSVLGDDFMLNVTTKPVVAQKAKPKITRAERLGKKQR
QGKPLTKLSEEQITRALKSNKKPKNPNQLPTPGDLFRAQLEEERRQKRRE
EGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDSGESGEE
SATSDEEPDESSAQSPGQEKEPKQTAKKPPKAEETSSTNRFRTKKIGLFD
QSDVEALKQLGQRAVKPVKETIFTGSKISTLGLHPHAVKNLEDLLSIREL
TSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKD
GVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLR
KGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQ
LVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNS
DEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSY
VVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEAL
TRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFR
DCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRK
GRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLPKDDEARTVQEA
ASNLQHKFQTLLEDDRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRIAH
MGHFAKSFALKEAPSKFAAKHAAPKAAPPTNRLTYTERDPEKIQAQKRAK
RRFTTTVSGEVRQLQQRDVGAQKPGAPPPKGGFIGGGVGRSSFMKSLGKS
RALNMSEFDSGLPPEGAAKRRKQA*
BS05330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8611-PA | 974 | CG8611-PA | 1..974 | 1..974 | 4908 | 100 | Plus |
CG8611-PB | 975 | CG8611-PB | 1..975 | 1..974 | 4896 | 99.9 | Plus |
CG8611-PC | 828 | CG8611-PC | 1..825 | 1..824 | 4118 | 99.9 | Plus |
pit-PC | 680 | CG6375-PC | 11..645 | 138..883 | 689 | 27.4 | Plus |
pit-PA | 680 | CG6375-PA | 11..645 | 138..883 | 689 | 27.4 | Plus |