Clone Sequence Records
BS05331.3prime Sequence
854 bp (853 high quality bases) assembled on 2005-12-02
> BS05331.3prime
ATGGTCTAGAAAGCTTTTAATCGGAGAACTTCTCCTTGAGCTCGCGGCGC
AGGATCTTGCCGGTGGGATTCTTTGGCACCTCGTCCACAAAGATCACTCC
GCCCTCAAGCTTCTTGTAGTGGGCCACCCGTTCGGCCACGTAGGCGGAGA
TCTCCTCGGCGCTGGCTTTCTCCCCCTGACGCAGGACGACAATGGCGCGT
GGTGCCTCGCCGTTGAATTCGTGGGGAATACCAAAGACGGCCGCCTCCAG
AATCTTGGGGTGATCACGCAGCACTGCCTCCAATTCGGCGGGTGGCACTT
GGAAACCCTTCACCTTAATCAGCTCCTTCATGCGGTCCGTGATATAGAAG
AGACCGTCCTCGTCGTAGAAGGCGACGTCGCCACTGCGCAGCCAGTTGCC
CGGATAGAAGGTGACCTGATTGGCCTCATCGTTGTTCAAATAACCGGCCA
TCACCTGGGGACCACGAACGCACAGCTCGCCAGTGGTGCGCGGACCAACG
CCCTTGGCATCGCTTCCATCCAGTGGAACGATCTTGGCCTCCGTGCTGGC
CGGCAGCACACCGGTCGAGGCGTACACCTTGTTGCCCTCCGGTGTTAGCA
AAACCACGGGAGAAGCCTCTGTCATGCCATAGCCCTGCTTGAAGACAGTG
TTCGGGAACTTGTTCAGGAAGCGCTCCACATCGTGCTGACCAATTGGGGC
CGCTCCACTCATCACCACCTTCAAGTGGGGCGCTGTTTCCTGCGTCAGCT
TGGGATGGTTAATCATAAAGAGGGCAATTGGGGGCACCAAGTTGAGGATG
CTGCCCTGGTACTTGTCCAGCGACCTCATGAAGTCATCCGGCTTAAAGCA
CGGC
BS05331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9009-PA | 1794 | CG9009-RA | 957..1794 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 2980 | CG9009-RC | 1553..2390 | 854..17 | 4190 | 100 | Minus |
| pdgy-RB | 3407 | CG9009-RB | 1610..2447 | 854..17 | 4190 | 100 | Minus |
| pdgy-RD | 2780 | CG9009-RD | 1353..2190 | 854..17 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14934630..14935272 | 17..659 | 3215 | 100 | Plus |
| X | 23542271 | X | 14935329..14935446 | 658..775 | 590 | 100 | Plus |
| X | 23542271 | X | 14935876..14935955 | 775..854 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:57:41 has no hits.
BS05331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:15 Download gff for
BS05331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-PA | 957..1794 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:47 Download gff for
BS05331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-PA | 957..1794 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:04:00 Download gff for
BS05331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 1353..2193 | 11..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:19 Download gff for
BS05331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 1353..2193 | 11..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:19 Download gff for
BS05331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14934627..14935272 | 11..659 | 99 | <- | Plus |
| X | 14935331..14935445 | 660..774 | 100 | <- | Plus |
| X | 14935876..14935955 | 775..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:04:00 Download gff for
BS05331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14828660..14829305 | 11..659 | 99 | <- | Plus |
| arm_X | 14829364..14829478 | 660..774 | 100 | <- | Plus |
| arm_X | 14829909..14829988 | 775..854 | 100 | | Plus |
BS05331.5prime Sequence
871 bp (840 high quality bases) assembled on 2005-12-02
> BS05331.5prime
GAAGTTATCAGTCGACATGAACCCAGCCGCTCAACTGCTGCGCATGCGCA
GCGCTACCGCATTTGGTAGCGCCGCAACGCGCTCCATCACGACGAACCGG
CGCCAGCGGACCACCAGTACCGCCAGCGCCCAGCGGGAGCGGACGCAGAG
CGTCAGCGAGACGGACAAGTTTCTGCACTACAGCCCCGAGGACGGCTACT
ACAAGACCTCGCCCTTTGACCCCGTCACCATTCCCAACGTACCGCTGCAT
GAGTACGTGTGGCGCGACTTCAAAAAGTGGGAGCGACGCACTGCAGCGGT
TTGTGTGATCACCGATCGGCAGTACACTTTCGCTCAAATGCGTGATGCCA
GCGCCGCTTTTGCCGTTCGTCTGCAGACCAAATTCAATCTCCAAAAGCCC
GACGTTTTGGCCATCTGTCTGCCGAATCTTCCCGAGTATCCCATTGCCAC
ATTGGGCGCCATTGAGGCGGGACTGACGGTGACCACAGTGAATCCCGTCT
ACACGCCGGATGAGATCGCCAGGCAATTGACCTTTAGCGGAGCCAAGTTC
CTGGTGGGAACGGTATCCGGATTTGCCACACTAAGCCAGGCCAGCAAACT
GGTGGGCAGGCAAATACCCATCGCCGTGGTGCGTACCAGTGCCGAGGAGG
CCCTGCCCGAGGGTGCCATCGATTTCAGCGAGCTGACGAGCACCCAGAAT
GTGCGTTACGAGGATCTGAAAGCGCCCAAAGAAGCCTCCGCCGACGATAT
GGTCTTCCTGCCCTTCTCCTCCGGCACCACTGGTCTGCCCAAGGGTGTGA
TGCTATCGCACAACAACATCACTAGCAATTGCGAGCAGGTGCAGGCCTCC
CTGCCACTGGATCTCATGGGT
BS05331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9009-PA | 1794 | CG9009-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 2980 | CG9009-RC | 596..1451 | 16..871 | 4280 | 100 | Plus |
| pdgy-RB | 3407 | CG9009-RB | 653..1508 | 16..871 | 4280 | 100 | Plus |
| pdgy-RD | 2780 | CG9009-RD | 396..1251 | 16..871 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14936057..14936419 | 871..509 | 1815 | 100 | Minus |
| X | 23542271 | X | 14950316..14950600 | 300..16 | 1425 | 100 | Minus |
| X | 23542271 | X | 14946271..14946482 | 509..298 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:33:59 has no hits.
BS05331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:16 Download gff for
BS05331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:48 Download gff for
BS05331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:39:31 Download gff for
BS05331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 392..1251 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:07 Download gff for
BS05331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 392..1251 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:07 Download gff for
BS05331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14950318..14950604 | 9..298 | 98 | | Minus |
| X | 14936057..14936418 | 510..871 | 100 | <- | Minus |
| X | 14946271..14946481 | 299..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:39:31 Download gff for
BS05331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14830090..14830451 | 510..871 | 100 | <- | Minus |
| arm_X | 14840304..14840514 | 299..509 | 100 | <- | Minus |
| arm_X | 14844351..14844637 | 9..298 | 98 | | Minus |
BS05331.complete Sequence
1826 bp assembled on 2007-10-31
> BS05331.complete
GAAGTTATCAGTCGACATGAACCCAGCCGCTCAACTGCTGCGCATGCGCA
GCGCTACCGCATTTGGTAGCGCCGCAACGCGCTCCATCACGACGAACCGG
CGCCAGCGGACCACCAGTACCGCCAGCGCCCAGCGGGAGCGGACGCAGAG
CGTCAGCGAGACGGACAAGTTTCTGCACTACAGCCCCGAGGACGGCTACT
ACAAGACCTCGCCCTTTGACCCCGTCACCATTCCCAACGTACCGCTGCAT
GAGTACGTGTGGCGCGACTTCAAAAAGTGGGAGCGACGCACTGCAGCGGT
TTGTGTGATCACCGATCGGCAGTACACTTTCGCTCAAATGCGTGATGCCA
GCGCCGCTTTTGCCGTTCGTCTGCAGACCAAATTCAATCTCCAAAAGCCC
GACGTTTTGGCCATCTGTCTGCCGAATCTTCCCGAGTATCCCATTGCCAC
ATTGGGCGCCATTGAGGCGGGACTGACGGTGACCACAGTGAATCCCGTCT
ACACGCCGGATGAGATCGCCAGGCAATTGACCTTTAGCGGAGCCAAGTTC
CTGGTGGGAACGGTATCCGGATTTGCCACACTAAGCCAGGCCAGCAAACT
GGTGGGCAGGCAAATACCCATCGCCGTGGTGCGTACCAGTGCCGAGGAGG
CCCTGCCCGAGGGTGCCATCGATTTCAGCGAGCTGACGAGCACCCAGAAT
GTGCGTTACGAGGATCTGAAAGCGCCCAAAGAAGCCTCCGCCGACGATAT
GGTCTTCCTGCCCTTCTCCTCCGGCACCACTGGTCTGCCCAAGGGTGTGA
TGCTATCGCACAACAACATCACTAGCAATTGCGAGCAGGTGCAGGCCTCC
CTGCCACTGGATCTCATGGGTCCGCAGAACACGTTGCCGGGCGTCCTGCC
CTTCTTTCACATCTACGGCCTCACCGTGGTGATGCTCTCGAAACTGGGAC
AGGGCTGCCGACTGGCCACCATGCCGTGCTTTAAGCCGGATGACTTCATG
AGGTCGCTGGACAAGTACCAGGGCAGCATCCTCAACTTGGTGCCCCCAAT
TGCCCTCTTTATGATTAACCATCCCAAGCTGACGCAGGAAACAGCGCCCC
ACTTGAAGGTGGTGATGAGTGGAGCGGCCCCAATTGGTCAGCACGATGTG
GAGCGCTTCCTGAACAAGTTCCCGAACACTGTCTTCAAGCAGGGCTATGG
CATGACAGAGGCTTCTCCCGTGGTTTTGCTAACACCGGAGGGCAACAAGG
TGTACGCCTCGACCGGTGTGCTGCCGGCCAGCACGGAGGCCAAGATCGTT
CCACTGGATGGAAGCGATGCCAAGGGCGTTGGTCCGCGCACCACTGGCGA
GCTGTGCGTTCGTGGTCCCCAGGTGATGGCCGGTTATTTGAACAACGATG
AGGCCAATCAGGTCACCTTCTATCCGGGCAACTGGCTGCGCAGTGGCGAC
GTCGCCTTCTACGACGAGGACGGTCTCTTCTATATCACGGACCGCATGAA
GGAGCTGATTAAGGTGAAGGGTTTCCAAGTGCCACCCGCCGAATTGGAGG
CAGTGCTGCGTGATCACCCCAAGATTCTGGAGGCGGCCGTCTTTGGTATT
CCCCACGAATTCAACGGCGAGGCACCACGCGCCATTGTCGTCCTGCGTCA
GGGGGAGAAAGCCAGCGCCGAGGAGATCTCCGCCTACGTGGCCGAACGGG
TGGCCCACTACAAGAAGCTTGAGGGCGGAGTGATCTTTGTGGACGAGGTG
CCAAAGAATCCCACCGGCAAGATCCTGCGCCGCGAGCTCAAGGAGAAGTT
CTCCGATTAAAAGCTTTCTAGACCAT
BS05331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 1794 | CG9009-PC | 1..1794 | 17..1810 | 8970 | 100 | Plus |
| pdgy-RB | 1794 | CG9009-PB | 1..1794 | 17..1810 | 8970 | 100 | Plus |
| pdgy-RD | 1794 | CG9009-PD | 1..1794 | 17..1810 | 8970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 2980 | CG9009-RC | 596..2390 | 16..1810 | 8975 | 100 | Plus |
| pdgy-RB | 3407 | CG9009-RB | 653..2447 | 16..1810 | 8975 | 100 | Plus |
| pdgy-RD | 2780 | CG9009-RD | 396..2190 | 16..1810 | 8975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14934630..14935272 | 1810..1168 | 3215 | 100 | Minus |
| X | 23542271 | X | 14935876..14936419 | 1052..509 | 2720 | 100 | Minus |
| X | 23542271 | X | 14950316..14950600 | 300..16 | 1425 | 100 | Minus |
| X | 23542271 | X | 14946271..14946482 | 509..298 | 1060 | 100 | Minus |
| X | 23542271 | X | 14935329..14935446 | 1169..1052 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:03:39 has no hits.
BS05331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:45 Download gff for
BS05331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-RA | 1..1794 | 17..1810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:49 Download gff for
BS05331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-RA | 135..1936 | 9..1816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:24 Download gff for
BS05331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 397..2188 | 17..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:27 Download gff for
BS05331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-RA | 140..1931 | 17..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:19 Download gff for
BS05331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 397..2188 | 17..1808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:19 Download gff for
BS05331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14950318..14950599 | 17..298 | 100 | | Minus |
| X | 14934632..14935272 | 1168..1808 | 100 | <- | Minus |
| X | 14935331..14935445 | 1053..1167 | 100 | <- | Minus |
| X | 14935876..14936418 | 510..1052 | 100 | <- | Minus |
| X | 14946271..14946481 | 299..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:24 Download gff for
BS05331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14828665..14829305 | 1168..1808 | 100 | <- | Minus |
| arm_X | 14829364..14829478 | 1053..1167 | 100 | <- | Minus |
| arm_X | 14829909..14830451 | 510..1052 | 100 | <- | Minus |
| arm_X | 14840304..14840514 | 299..509 | 100 | <- | Minus |
| arm_X | 14844351..14844632 | 17..298 | 100 | | Minus |
BS05331.pep Sequence
Translation from 16 to 1809
> BS05331.pep
MNPAAQLLRMRSATAFGSAATRSITTNRRQRTTSTASAQRERTQSVSETD
KFLHYSPEDGYYKTSPFDPVTIPNVPLHEYVWRDFKKWERRTAAVCVITD
RQYTFAQMRDASAAFAVRLQTKFNLQKPDVLAICLPNLPEYPIATLGAIE
AGLTVTTVNPVYTPDEIARQLTFSGAKFLVGTVSGFATLSQASKLVGRQI
PIAVVRTSAEEALPEGAIDFSELTSTQNVRYEDLKAPKEASADDMVFLPF
SSGTTGLPKGVMLSHNNITSNCEQVQASLPLDLMGPQNTLPGVLPFFHIY
GLTVVMLSKLGQGCRLATMPCFKPDDFMRSLDKYQGSILNLVPPIALFMI
NHPKLTQETAPHLKVVMSGAAPIGQHDVERFLNKFPNTVFKQGYGMTEAS
PVVLLTPEGNKVYASTGVLPASTEAKIVPLDGSDAKGVGPRTTGELCVRG
PQVMAGYLNNDEANQVTFYPGNWLRSGDVAFYDEDGLFYITDRMKELIKV
KGFQVPPAELEAVLRDHPKILEAAVFGIPHEFNGEAPRAIVVLRQGEKAS
AEEISAYVAERVAHYKKLEGGVIFVDEVPKNPTGKILRRELKEKFSD*
BS05331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-PC | 597 | CG9009-PC | 1..597 | 1..597 | 3080 | 100 | Plus |
| pdgy-PB | 597 | CG9009-PB | 1..597 | 1..597 | 3080 | 100 | Plus |
| pdgy-PD | 597 | CG9009-PD | 1..597 | 1..597 | 3080 | 100 | Plus |
| pdgy-PA | 597 | CG9009-PA | 1..597 | 1..597 | 3080 | 100 | Plus |
| CG6178-PA | 544 | CG6178-PA | 27..535 | 77..593 | 705 | 32.3 | Plus |
