Clone Sequence Records
BS05332.3prime Sequence
881 bp (755 high quality bases) assembled on 2005-12-02
> BS05332.3prime
ATGGTCTAGAAAGCTTTTAAGCCCTAACGTTGTTTTCTATCCAGTTCAGA
TACGCTTCAACCCTTGTGTACACGCCGGGCCATCCTTTTAGGCCACAGGG
CGTGGGTCCGTAGGAGACCACACCAGCAATGTAGTAGTTTGAGTTTCCAT
TGGAGTAGTCCTCGAGCAGAAGGGGGCCACCCGAGTCCCCGCGACAGGAA
TCAACCCCCTCAACTCCGCCGGCGCACATCTGTTTGGTGGTGACAGTCCT
TCTTTGGGTGGCGTATCTTTGGTTGCATTCGGACGTCGGTACCGTATCCA
ACTCAGCCTTCAGCTTGATATTGGACGTAAAATTTGTCTCCGTGCGACCC
CACCCTGCCACCACCACCTTTCGGCCAAGGAATATATTGTTGTGCTGGGA
CGCTAAAGTGGGCAGACATACTGGTAATATGAAGTCGCTGTACTGAACCT
CGTCCCGCAATCGCAGCAACGCAATGTCATTTAGCTGGTCCCGTGAGTTT
CCCGGGTACTGCGGGTGCGGAATACGCTCCTCAACAGGGTAGTCTACGTA
CGGTTCGTTGCAGTCCCGTCGTCCGTTTTTACCGACTGTGCAATCCGGAT
TGGTGCTCGCATCCCACTCACCCAGGCGTACTCCCGTCAGCTCCCAATCA
CTGGGAATAGCCGAGACGCAGTGTGCCGCCGTCAGAACGTAACGATGGTT
GATTAGAGATCCGCCGCAGTGGTGACCTTTCACGTTACCGGGCTTCGTGT
ACTCTATTAGGGCCATCCAAGGAAACTCCCTCTTTGTCGTCTCGTTCCCA
CCCACCACTCGGTCTCCAAAGTTTTCACGGCAATTGGGCGCCATTGGTAA
CAGTTTGGTCCCGAAGCGTTTTGAAGGCTTA
BS05332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1102-PA | 1173 | CG1102-RA | 309..1173 | 881..17 | 4200 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-RC | 1495 | CG1102-RC | 415..1279 | 881..17 | 4250 | 99.4 | Minus |
MP1-RA | 1468 | CG1102-RA | 388..1252 | 881..17 | 4250 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4308895..4309619 | 741..17 | 3625 | 100 | Minus |
3R | 32079331 | 3R | 4308694..4308833 | 881..742 | 625 | 96.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:14:26 has no hits.
BS05332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:17 Download gff for
BS05332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1102-PA | 310..1173 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:50 Download gff for
BS05332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1102-PA | 310..1173 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:36 Download gff for
BS05332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 389..1256 | 11..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:41 Download gff for
BS05332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 389..1256 | 11..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:41 Download gff for
BS05332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4308695..4308833 | 742..880 | 96 | -> | Minus |
3R | 4308895..4309620 | 16..741 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:36 Download gff for
BS05332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 134417..134555 | 742..880 | 96 | -> | Minus |
arm_3R | 134617..135342 | 16..741 | 99 | <- | Minus |
BS05332.5prime Sequence
845 bp (720 high quality bases) assembled on 2005-11-29
> BS05332.5prime
GAAGTTATCAGTCGACATGGAACCGCACTTTTTTTTCACCGTACTGTGGA
TGCTATTGATGGGAACAAGCAGCACTTACGCACAAGAAATCTTTGGGTAT
TGTAGAACGCCTGATGAGAACAGCGGCACCTGCATAAACCTCCGGGAATG
TGGATACCTATTCGAACTGCTTCAAAGCGAAGAGGTTACGGAACAGGACC
GTCGATTTCTGCAAGCCAGCCAATGTGGCTACCGGAATGGACAAGTGCTT
ATTTGCTGTGCAAACAGCCGAATGCGAAACCAGCAACCTCAGTGGGGAAA
TCATCCTCAACCTACTCAGACCACTAAGCCTACAAAACGCTCTGGGACCA
AACTGTTACCAATGGCGCCCAATTGCGGTGAAAACTTTGGAGACCGAGTG
GTGGGTGGTAACGAGACGACAAAGAGGGAGTTTCCTTGGATGGCCCTAAT
AGAGTACACGAAGCCCGGTAACGTGAAAGGTCACCACTGCGGCGGATCTC
TAATCAACCATCGTTACGTTCTGACGGCGGCACACTGCGTCTCGGCTATT
CCCAGTGATTGGGAGCTGACGGGAGTACGCCTGGGTGAGTGGGATGCGAG
CACCAATCCGGATTGCACAGTCGGTAAAAACGGACGACGGGACTGCAACG
AACCGTACGTAGACTACCCTGTTGAGGAGCGTATTCCGCACCCGCAGTAC
CCGGGAAACTCACGGGACCAGCTAAATGACATTGCGTTGCTGCGATTGCG
GGACGAGGTTCAGTACAGCGACTTCATATTACCAGTATGTCTGCCCACTT
TAACGTCCCAGCACAACAATATATTCCTTGGCCGAAAGGTGGTGG
BS05332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1102-PA | 1173 | CG1102-RA | 1..829 | 17..845 | 4120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-RA | 1468 | CG1102-RA | 79..908 | 16..845 | 4135 | 99.9 | Plus |
MP1-RC | 1495 | CG1102-RC | 340..935 | 250..845 | 2965 | 99.8 | Plus |
MP1-RC | 1495 | CG1102-RC | 79..313 | 16..250 | 1175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4308895..4309275 | 465..845 | 1890 | 99.7 | Plus |
3R | 32079331 | 3R | 4308620..4308833 | 251..464 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 4308262..4308427 | 85..250 | 830 | 100 | Plus |
3R | 32079331 | 3R | 4307986..4308056 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:45:38 has no hits.
BS05332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:18 Download gff for
BS05332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1102-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:51 Download gff for
BS05332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1102-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:01 Download gff for
BS05332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 79..908 | 16..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:11 Download gff for
BS05332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 79..908 | 16..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:11 Download gff for
BS05332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4308895..4309275 | 465..845 | 99 | | Plus |
3R | 4307986..4308056 | 16..86 | 100 | -> | Plus |
3R | 4308264..4308427 | 87..250 | 100 | -> | Plus |
3R | 4308620..4308833 | 251..464 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:01 Download gff for
BS05332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 133708..133778 | 16..86 | 100 | -> | Plus |
arm_3R | 133986..134149 | 87..250 | 100 | -> | Plus |
arm_3R | 134342..134555 | 251..464 | 100 | -> | Plus |
arm_3R | 134617..134997 | 465..845 | 99 | | Plus |
BS05332.complete Sequence
1205 bp (1205 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635097
> BS05332.complete
GAAGTTATCAGTCGACATGGAACCGCACTTTTTTTTCACCGTACTGTGGA
TGCTATTGATGGGAACAAGCAGCACTTACGCACAAGAAATCTTTGGGTAT
TGTAGAACGCCTGATGAGAACAGCGGCACCTGCATAAACCTCCGGGAATG
TGGATACCTATTCGAACTGCTTCAAAGCGAAGAGGTTACGGAACAGGACC
GTCGATTTCTGCAAGCCAGCCAATGTGGCTACCGGAATGGACAAGTGCTT
ATTTGCTGTGCAAACAGCCGAATGCGAAACCAGCAACCTCAGTGGGGAAA
TCATCCTCAACCTACTCAGACCACTAAGCCTACAAAACGCTCTGGGACCA
AACTGTTACCAATGGCGCCCAATTGCGGTGAAAACTTTGGAGACCGAGTG
GTGGGTGGTAACGAGACGACAAAGAGGGAGTTTCCTTGGATGGCCCTAAT
AGAGTACACGAAGCCCGGTAACGTGAAAGGTCACCACTGCGGCGGATCTC
TAATCAACCATCGTTACGTTCTGACGGCGGCACACTGCGTCTCGGCTATT
CCCAGTGATTGGGAGCTGACGGGAGTACGCCTGGGTGAGTGGGATGCGAG
CACCAATCCGGATTGCACAGTCGGTAAAAACGGACGACGGGACTGCAACG
AACCGTACGTAGACTACCCTGTTGAGGAGCGTATTCCGCACCCGCAGTAC
CCGGGAAACTCACGGGACCAGCTAAATGACATTGCGTTGCTGCGATTGCG
GGACGAGGTTCAGTACAGCGACTTCATATTACCAGTATGTCTGCCCACTT
TAGCGTCCCAGCACAACAATATATTCCTTGGCCGAAAGGTGGTGGTGGCA
GGGTGGGGTCGCACGGAGACAAATTTTACGTCCAATATCAAGCTGAAGGC
TGAGTTGGATACGGTACCGACGTCCGAATGCAACCAAAGATACGCCACCC
AAAGAAGGACTGTCACCACCAAACAGATGTGCGCCGGCGGAGTTGAGGGG
GTTGATTCCTGTCGCGGGGACTCGGGTGGCCCCCTTCTGCTCGAGGACTA
CTCCAATGGAAACTCAAACTACTACATTGCTGGTGTGGTCTCCTACGGAC
CCACGCCCTGTGGCCTAAAAGGATGGCCCGGCGTGTACACAAGGGTTGAA
GCGTATCTGAACTGGATAGAAAACAACGTTAGGGCTTAAAAGCTTTCTAG
ACCAT
BS05332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-RA | 1173 | CG1102-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
MP1-RC | 1200 | CG1102-PC | 261..1200 | 250..1189 | 4700 | 100 | Plus |
MP1-RC | 1200 | CG1102-PC | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-RA | 1468 | CG1102-RA | 79..1252 | 16..1189 | 5870 | 100 | Plus |
MP1-RC | 1495 | CG1102-RC | 340..1279 | 250..1189 | 4700 | 100 | Plus |
MP1-RC | 1495 | CG1102-RC | 79..313 | 16..250 | 1175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4308895..4309619 | 465..1189 | 3625 | 100 | Plus |
3R | 32079331 | 3R | 4308620..4308833 | 251..464 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 4308262..4308427 | 85..250 | 830 | 100 | Plus |
3R | 32079331 | 3R | 4307986..4308056 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:54:04 has no hits.
BS05332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:38 Download gff for
BS05332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:41 Download gff for
BS05332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 79..1256 | 16..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:29 Download gff for
BS05332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 80..1250 | 17..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:39 Download gff for
BS05332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 79..1256 | 16..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:43 Download gff for
BS05332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 80..1250 | 17..1187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:43 Download gff for
BS05332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4307987..4308056 | 17..86 | 100 | -> | Plus |
3R | 4308264..4308427 | 87..250 | 100 | -> | Plus |
3R | 4308620..4308833 | 251..464 | 100 | -> | Plus |
3R | 4308895..4309617 | 465..1187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:29 Download gff for
BS05332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 133986..134149 | 87..250 | 100 | -> | Plus |
arm_3R | 133709..133778 | 17..86 | 100 | -> | Plus |
arm_3R | 134342..134555 | 251..464 | 100 | -> | Plus |
arm_3R | 134617..135339 | 465..1187 | 100 | | Plus |
BS05332.pep Sequence
Translation from 16 to 1188
> BS05332.pep
MEPHFFFTVLWMLLMGTSSTYAQEIFGYCRTPDENSGTCINLRECGYLFE
LLQSEEVTEQDRRFLQASQCGYRNGQVLICCANSRMRNQQPQWGNHPQPT
QTTKPTKRSGTKLLPMAPNCGENFGDRVVGGNETTKREFPWMALIEYTKP
GNVKGHHCGGSLINHRYVLTAAHCVSAIPSDWELTGVRLGEWDASTNPDC
TVGKNGRRDCNEPYVDYPVEERIPHPQYPGNSRDQLNDIALLRLRDEVQY
SDFILPVCLPTLASQHNNIFLGRKVVVAGWGRTETNFTSNIKLKAELDTV
PTSECNQRYATQRRTVTTKQMCAGGVEGVDSCRGDSGGPLLLEDYSNGNS
NYYIAGVVSYGPTPCGLKGWPGVYTRVEAYLNWIENNVRA*
BS05332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-PA | 390 | CG1102-PA | 1..390 | 1..390 | 2149 | 100 | Plus |
MP1-PC | 399 | CG1102-PC | 1..399 | 1..390 | 2129 | 97.7 | Plus |
ea-PA | 392 | CG4920-PA | 34..392 | 26..390 | 1000 | 51 | Plus |
ea-PB | 261 | CG4920-PB | 7..261 | 138..390 | 807 | 57.3 | Plus |
SPE-PA | 400 | CG16705-PA | 25..398 | 19..388 | 770 | 43.5 | Plus |