Clone BS05332 Report

Search the DGRC for BS05332

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:53
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptMP1-RA
Protein status:BS05332.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05332.3prime Sequence

881 bp (755 high quality bases) assembled on 2005-12-02

> BS05332.3prime
ATGGTCTAGAAAGCTTTTAAGCCCTAACGTTGTTTTCTATCCAGTTCAGA
TACGCTTCAACCCTTGTGTACACGCCGGGCCATCCTTTTAGGCCACAGGG
CGTGGGTCCGTAGGAGACCACACCAGCAATGTAGTAGTTTGAGTTTCCAT
TGGAGTAGTCCTCGAGCAGAAGGGGGCCACCCGAGTCCCCGCGACAGGAA
TCAACCCCCTCAACTCCGCCGGCGCACATCTGTTTGGTGGTGACAGTCCT
TCTTTGGGTGGCGTATCTTTGGTTGCATTCGGACGTCGGTACCGTATCCA
ACTCAGCCTTCAGCTTGATATTGGACGTAAAATTTGTCTCCGTGCGACCC
CACCCTGCCACCACCACCTTTCGGCCAAGGAATATATTGTTGTGCTGGGA
CGCTAAAGTGGGCAGACATACTGGTAATATGAAGTCGCTGTACTGAACCT
CGTCCCGCAATCGCAGCAACGCAATGTCATTTAGCTGGTCCCGTGAGTTT
CCCGGGTACTGCGGGTGCGGAATACGCTCCTCAACAGGGTAGTCTACGTA
CGGTTCGTTGCAGTCCCGTCGTCCGTTTTTACCGACTGTGCAATCCGGAT
TGGTGCTCGCATCCCACTCACCCAGGCGTACTCCCGTCAGCTCCCAATCA
CTGGGAATAGCCGAGACGCAGTGTGCCGCCGTCAGAACGTAACGATGGTT
GATTAGAGATCCGCCGCAGTGGTGACCTTTCACGTTACCGGGCTTCGTGT
ACTCTATTAGGGCCATCCAAGGAAACTCCCTCTTTGTCGTCTCGTTCCCA
CCCACCACTCGGTCTCCAAAGTTTTCACGGCAATTGGGCGCCATTGGTAA
CAGTTTGGTCCCGAAGCGTTTTGAAGGCTTA

BS05332.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1102-PA 1173 CG1102-RA 309..1173 881..17 4200 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
MP1-RC 1495 CG1102-RC 415..1279 881..17 4250 99.4 Minus
MP1-RA 1468 CG1102-RA 388..1252 881..17 4250 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4308895..4309619 741..17 3625 100 Minus
3R 32079331 3R 4308694..4308833 881..742 625 96.4 Minus
Blast to na_te.dros performed on 2015-02-10 22:14:26 has no hits.

BS05332.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:17 Download gff for BS05332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1102-PA 310..1173 17..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:50 Download gff for BS05332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1102-PA 310..1173 17..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:36 Download gff for BS05332.3prime
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 389..1256 11..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:41 Download gff for BS05332.3prime
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 389..1256 11..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:41 Download gff for BS05332.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4308695..4308833 742..880 96 -> Minus
3R 4308895..4309620 16..741 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:36 Download gff for BS05332.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 134417..134555 742..880 96 -> Minus
arm_3R 134617..135342 16..741 99 <- Minus

BS05332.5prime Sequence

845 bp (720 high quality bases) assembled on 2005-11-29

> BS05332.5prime
GAAGTTATCAGTCGACATGGAACCGCACTTTTTTTTCACCGTACTGTGGA
TGCTATTGATGGGAACAAGCAGCACTTACGCACAAGAAATCTTTGGGTAT
TGTAGAACGCCTGATGAGAACAGCGGCACCTGCATAAACCTCCGGGAATG
TGGATACCTATTCGAACTGCTTCAAAGCGAAGAGGTTACGGAACAGGACC
GTCGATTTCTGCAAGCCAGCCAATGTGGCTACCGGAATGGACAAGTGCTT
ATTTGCTGTGCAAACAGCCGAATGCGAAACCAGCAACCTCAGTGGGGAAA
TCATCCTCAACCTACTCAGACCACTAAGCCTACAAAACGCTCTGGGACCA
AACTGTTACCAATGGCGCCCAATTGCGGTGAAAACTTTGGAGACCGAGTG
GTGGGTGGTAACGAGACGACAAAGAGGGAGTTTCCTTGGATGGCCCTAAT
AGAGTACACGAAGCCCGGTAACGTGAAAGGTCACCACTGCGGCGGATCTC
TAATCAACCATCGTTACGTTCTGACGGCGGCACACTGCGTCTCGGCTATT
CCCAGTGATTGGGAGCTGACGGGAGTACGCCTGGGTGAGTGGGATGCGAG
CACCAATCCGGATTGCACAGTCGGTAAAAACGGACGACGGGACTGCAACG
AACCGTACGTAGACTACCCTGTTGAGGAGCGTATTCCGCACCCGCAGTAC
CCGGGAAACTCACGGGACCAGCTAAATGACATTGCGTTGCTGCGATTGCG
GGACGAGGTTCAGTACAGCGACTTCATATTACCAGTATGTCTGCCCACTT
TAACGTCCCAGCACAACAATATATTCCTTGGCCGAAAGGTGGTGG

BS05332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1102-PA 1173 CG1102-RA 1..829 17..845 4120 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
MP1-RA 1468 CG1102-RA 79..908 16..845 4135 99.9 Plus
MP1-RC 1495 CG1102-RC 340..935 250..845 2965 99.8 Plus
MP1-RC 1495 CG1102-RC 79..313 16..250 1175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4308895..4309275 465..845 1890 99.7 Plus
3R 32079331 3R 4308620..4308833 251..464 1070 100 Plus
3R 32079331 3R 4308262..4308427 85..250 830 100 Plus
3R 32079331 3R 4307986..4308056 16..86 355 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:45:38 has no hits.

BS05332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:18 Download gff for BS05332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1102-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:51 Download gff for BS05332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1102-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:01 Download gff for BS05332.5prime
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 79..908 16..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:11 Download gff for BS05332.5prime
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 79..908 16..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:11 Download gff for BS05332.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4308895..4309275 465..845 99   Plus
3R 4307986..4308056 16..86 100 -> Plus
3R 4308264..4308427 87..250 100 -> Plus
3R 4308620..4308833 251..464 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:01 Download gff for BS05332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 133708..133778 16..86 100 -> Plus
arm_3R 133986..134149 87..250 100 -> Plus
arm_3R 134342..134555 251..464 100 -> Plus
arm_3R 134617..134997 465..845 99   Plus

BS05332.complete Sequence

1205 bp (1205 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635097

> BS05332.complete
GAAGTTATCAGTCGACATGGAACCGCACTTTTTTTTCACCGTACTGTGGA
TGCTATTGATGGGAACAAGCAGCACTTACGCACAAGAAATCTTTGGGTAT
TGTAGAACGCCTGATGAGAACAGCGGCACCTGCATAAACCTCCGGGAATG
TGGATACCTATTCGAACTGCTTCAAAGCGAAGAGGTTACGGAACAGGACC
GTCGATTTCTGCAAGCCAGCCAATGTGGCTACCGGAATGGACAAGTGCTT
ATTTGCTGTGCAAACAGCCGAATGCGAAACCAGCAACCTCAGTGGGGAAA
TCATCCTCAACCTACTCAGACCACTAAGCCTACAAAACGCTCTGGGACCA
AACTGTTACCAATGGCGCCCAATTGCGGTGAAAACTTTGGAGACCGAGTG
GTGGGTGGTAACGAGACGACAAAGAGGGAGTTTCCTTGGATGGCCCTAAT
AGAGTACACGAAGCCCGGTAACGTGAAAGGTCACCACTGCGGCGGATCTC
TAATCAACCATCGTTACGTTCTGACGGCGGCACACTGCGTCTCGGCTATT
CCCAGTGATTGGGAGCTGACGGGAGTACGCCTGGGTGAGTGGGATGCGAG
CACCAATCCGGATTGCACAGTCGGTAAAAACGGACGACGGGACTGCAACG
AACCGTACGTAGACTACCCTGTTGAGGAGCGTATTCCGCACCCGCAGTAC
CCGGGAAACTCACGGGACCAGCTAAATGACATTGCGTTGCTGCGATTGCG
GGACGAGGTTCAGTACAGCGACTTCATATTACCAGTATGTCTGCCCACTT
TAGCGTCCCAGCACAACAATATATTCCTTGGCCGAAAGGTGGTGGTGGCA
GGGTGGGGTCGCACGGAGACAAATTTTACGTCCAATATCAAGCTGAAGGC
TGAGTTGGATACGGTACCGACGTCCGAATGCAACCAAAGATACGCCACCC
AAAGAAGGACTGTCACCACCAAACAGATGTGCGCCGGCGGAGTTGAGGGG
GTTGATTCCTGTCGCGGGGACTCGGGTGGCCCCCTTCTGCTCGAGGACTA
CTCCAATGGAAACTCAAACTACTACATTGCTGGTGTGGTCTCCTACGGAC
CCACGCCCTGTGGCCTAAAAGGATGGCCCGGCGTGTACACAAGGGTTGAA
GCGTATCTGAACTGGATAGAAAACAACGTTAGGGCTTAAAAGCTTTCTAG
ACCAT

BS05332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
MP1-RA 1173 CG1102-PA 1..1173 17..1189 5865 100 Plus
MP1-RC 1200 CG1102-PC 261..1200 250..1189 4700 100 Plus
MP1-RC 1200 CG1102-PC 1..234 17..250 1170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
MP1-RA 1468 CG1102-RA 79..1252 16..1189 5870 100 Plus
MP1-RC 1495 CG1102-RC 340..1279 250..1189 4700 100 Plus
MP1-RC 1495 CG1102-RC 79..313 16..250 1175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4308895..4309619 465..1189 3625 100 Plus
3R 32079331 3R 4308620..4308833 251..464 1070 100 Plus
3R 32079331 3R 4308262..4308427 85..250 830 100 Plus
3R 32079331 3R 4307986..4308056 16..86 355 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:54:04 has no hits.

BS05332.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:38 Download gff for BS05332.complete
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 1..1173 17..1189 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:41 Download gff for BS05332.complete
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 79..1256 16..1195 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:29 Download gff for BS05332.complete
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 80..1250 17..1187 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:39 Download gff for BS05332.complete
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 79..1256 16..1195 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:43 Download gff for BS05332.complete
Subject Subject Range Query Range Percent Splice Strand
MP1-RA 80..1250 17..1187 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:43 Download gff for BS05332.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4307987..4308056 17..86 100 -> Plus
3R 4308264..4308427 87..250 100 -> Plus
3R 4308620..4308833 251..464 100 -> Plus
3R 4308895..4309617 465..1187 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:29 Download gff for BS05332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 133986..134149 87..250 100 -> Plus
arm_3R 133709..133778 17..86 100 -> Plus
arm_3R 134342..134555 251..464 100 -> Plus
arm_3R 134617..135339 465..1187 100   Plus

BS05332.pep Sequence

Translation from 16 to 1188

> BS05332.pep
MEPHFFFTVLWMLLMGTSSTYAQEIFGYCRTPDENSGTCINLRECGYLFE
LLQSEEVTEQDRRFLQASQCGYRNGQVLICCANSRMRNQQPQWGNHPQPT
QTTKPTKRSGTKLLPMAPNCGENFGDRVVGGNETTKREFPWMALIEYTKP
GNVKGHHCGGSLINHRYVLTAAHCVSAIPSDWELTGVRLGEWDASTNPDC
TVGKNGRRDCNEPYVDYPVEERIPHPQYPGNSRDQLNDIALLRLRDEVQY
SDFILPVCLPTLASQHNNIFLGRKVVVAGWGRTETNFTSNIKLKAELDTV
PTSECNQRYATQRRTVTTKQMCAGGVEGVDSCRGDSGGPLLLEDYSNGNS
NYYIAGVVSYGPTPCGLKGWPGVYTRVEAYLNWIENNVRA*

BS05332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
MP1-PA 390 CG1102-PA 1..390 1..390 2149 100 Plus
MP1-PC 399 CG1102-PC 1..399 1..390 2129 97.7 Plus
ea-PA 392 CG4920-PA 34..392 26..390 1000 51 Plus
ea-PB 261 CG4920-PB 7..261 138..390 807 57.3 Plus
SPE-PA 400 CG16705-PA 25..398 19..388 770 43.5 Plus