Clone Sequence Records
BS05335.3prime Sequence
901 bp (792 high quality bases) assembled on 2005-12-02
> BS05335.3prime
ATGGTCTAGAAAGCTTCTATTCCTCCTTGTTCTCGGCAGCCGGAACTTCC
CAGTAGTGCTCGTCCTGGTGATGTTCGTCCTTCTTCAGGTTCCGGAAGTT
GGTGTACTTCAAAACGGCACCTGTCAAAATACCACCTCCGATGGCAATGA
GCAGTGTGACAGCGATGCCAAACAATTGGTAGCCCGCCTGCGAAGTAGCG
TTCCGGCCAAGACCGCCCATGATTTTGGTCTCGGTTCCGTTGGTGCCCAC
CATGGCCGGGAAAATGTCCTGCAGCTCGGATTGGTACTCGCCCACGGTGG
CCATCGAGGCGTAAATGGCGGAGGCAATGGCCGAAATCAGGGCAGGCATT
CCGTGCAGGTTGTGCACGCCACAGGTGTCGTGCAGCCTCAGATTGGCCGT
CATCCAGGGTGTTAAATAGCGATAGCCGAGCACCGAGACCGTGCCGGCGA
TAATGCCAATTAAGACAGCTCCGTGGGCGCCGAGCAGCAAGTTGCACACC
GTGCCCACGGCAACTCCGCCGGCGAGGGTCGAGTTCTGCACGTGCACCAT
GTCCAATTTATTCTCGTGGCTGACAAGCGCGGATACAACGAAGGTGGTCA
CTGTTGCCGCGGCTAATGACAGGAACGTGTTCAAAATGGCCCGCTCGCCG
CCGGCTCCGTCGGCCAGAACGGAGTTAAAGCTGGGCCAGTACACCCACAG
GAAGGTGGTGCCGATCATGGCGAAGATGTCCGACGTATAGCTGGCGCCCT
CTAGCTTTCCCGTTTCGTTCTGGTCGCTGGCGGGTCTCAGCATCAGGGCA
ACAGCCAGTCCAAAGTAGGCTCCAAAAGCATGGACAGTGATAGAGCCGCC
GCAGTCGCAGATACTGAACACATGAAGAGCCAGATACTCATTGGCCGCGA
A
BS05335.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7499-PA | 1350 | Rh50-RA | 466..1350 | 901..17 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh50-RA | 1836 | CG7499-RA | 792..1676 | 901..17 | 4425 | 100 | Minus |
| Rh50-RC | 1974 | CG7499-RC | 792..1675 | 901..18 | 4420 | 100 | Minus |
| Rh50-RB | 2773 | CG7499-RB | 792..1675 | 901..18 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4913695..4913956 | 862..601 | 1310 | 100 | Minus |
| 3L | 28110227 | 3L | 4918320..4918515 | 409..214 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 4917454..4917647 | 603..410 | 970 | 100 | Minus |
| 3L | 28110227 | 3L | 4918755..4918862 | 124..17 | 540 | 100 | Minus |
| 3L | 28110227 | 3L | 4918596..4918691 | 214..119 | 480 | 100 | Minus |
| 3L | 28110227 | 3L | 4913581..4913619 | 901..863 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:26:52 has no hits.
BS05335.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:23 Download gff for
BS05335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-PA | 468..1350 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:57 Download gff for
BS05335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7499-PA | 468..1350 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:16:26 Download gff for
BS05335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 792..1676 | 17..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:17 Download gff for
BS05335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 792..1676 | 17..901 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:17 Download gff for
BS05335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4913581..4913619 | 863..901 | 100 | -> | Minus |
| 3L | 4913695..4913956 | 601..862 | 100 | -> | Minus |
| 3L | 4917457..4917647 | 410..600 | 100 | -> | Minus |
| 3L | 4918320..4918514 | 215..409 | 100 | -> | Minus |
| 3L | 4918596..4918689 | 121..214 | 100 | -> | Minus |
| 3L | 4918759..4918862 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:16:26 Download gff for
BS05335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4913581..4913619 | 863..901 | 100 | -> | Minus |
| arm_3L | 4913695..4913956 | 601..862 | 100 | -> | Minus |
| arm_3L | 4917457..4917647 | 410..600 | 100 | -> | Minus |
| arm_3L | 4918320..4918514 | 215..409 | 100 | -> | Minus |
| arm_3L | 4918596..4918689 | 121..214 | 100 | -> | Minus |
| arm_3L | 4918759..4918862 | 17..120 | 100 | | Minus |
BS05335.5prime Sequence
906 bp (817 high quality bases) assembled on 2005-12-02
> BS05335.5prime
GAAGTTATCAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACG
TCGTCCTGATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTC
GTGCGTTACGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGC
TGGATCAGCAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCC
AGGTGATGATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAG
TACGGATACAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGT
GCAATGGGCTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGA
TCAGCCTCTCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTG
CCCCTGATAAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACT
CCTGTGCATGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATC
TGGCTCTTCATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTC
CATGCTTTTGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACC
CGCCAGCGACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGT
CGGACATCTTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCC
AGCTTTAACTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTT
GAACACGTTCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTAT
CCGCGCTTGTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAAC
TCGACCCTCGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCT
CGGCGC
BS05335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7499-PA | 1350 | Rh50-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh50-RC | 1974 | CG7499-RC | 326..1216 | 16..906 | 4455 | 100 | Plus |
| Rh50-RB | 2773 | CG7499-RB | 326..1216 | 16..906 | 4455 | 100 | Plus |
| Rh50-RA | 1836 | CG7499-RA | 326..1216 | 16..906 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4913695..4913956 | 521..782 | 1310 | 100 | Plus |
| 3L | 28110227 | 3L | 4910693..4910862 | 16..185 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 4912672..4912840 | 186..354 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 4913451..4913619 | 352..520 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 4917454..4917580 | 780..906 | 635 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 264..320 | 452..508 | 114 | 66.7 | Plus |
BS05335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:24 Download gff for
BS05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:35:59 Download gff for
BS05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7499-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:41 Download gff for
BS05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 326..1216 | 16..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:42:41 Download gff for
BS05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 326..1216 | 16..906 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:42:41 Download gff for
BS05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4912672..4912840 | 186..354 | 100 | -> | Plus |
| 3L | 4913454..4913619 | 355..520 | 100 | -> | Plus |
| 3L | 4913695..4913956 | 521..782 | 100 | -> | Plus |
| 3L | 4917457..4917580 | 783..906 | 100 | | Plus |
| 3L | 4910693..4910862 | 16..185 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:41 Download gff for
BS05335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4910693..4910862 | 16..185 | 100 | -> | Plus |
| arm_3L | 4912672..4912840 | 186..354 | 100 | -> | Plus |
| arm_3L | 4913454..4913619 | 355..520 | 100 | -> | Plus |
| arm_3L | 4913695..4913956 | 521..782 | 100 | -> | Plus |
| arm_3L | 4917457..4917580 | 783..906 | 100 | | Plus |
BS05335.complete Sequence
1382 bp (1382 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635098
> BS05335.complete
GAAGTTATCAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACG
TCGTCCTGATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTC
GTGCGTTACGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGC
TGGATCAGCAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCC
AGGTGATGATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAG
TACGGATACAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGT
GCAATGGGCTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGA
TCAGCCTCTCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTG
CCCCTGATAAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACT
CCTGTGCATGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATC
TGGCTCTTCATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTC
CATGCTTTTGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACC
CGCCAGCGACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGT
CGGACATCTTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCC
AGCTTTAACTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTT
GAACACGTTCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTAT
CCGCGCTTGTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAAC
TCGACCCTCGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCT
CGGCGCCCACGGAGCTGTCTTAATTGGCATTATCGCCGGCACGGTCTCGG
TGCTCGGCTATCGCTATTTAACACCCTGGATGACGGCCAATCTGAGGCTG
CACGACACCTGTGGCGTGCACAACCTGCACGGAATGCCTGCCCTGATTTC
GGCCATTGCCTCCGCCATTTACGCCTCGATGGCCACCGTGGGCGAGTACC
AATCCGAGCTGCAGGACATTTTCCCGGCCATGGTGGGCACCAACGGAACC
GAGACCAAAATCATGGGCGGTCTTGGCCGGAACGCTACTTCGCAGGCGGG
CTACCAATTGTTTGGCATCGCTGTCACACTGCTCATTGCCATCGGAGGTG
GTATTTTGACAGGTGCCGTTTTGAAGTACACCAACTTCCGGAACCTGAAG
AAGGACGAACATCACCAGGACGAGCACTACTGGGAAGTTCCGGCTGCCGA
GAACAAGGAGGAATAGAAGCTTTCTAGACCAT
BS05335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh50-RA | 1350 | CG7499-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| Rh50-RC | 1383 | CG7499-PC | 1..1349 | 17..1365 | 6745 | 100 | Plus |
| Rh50-RB | 1383 | CG7499-PB | 1..1349 | 17..1365 | 6745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh50-RA | 1836 | CG7499-RA | 326..1676 | 16..1366 | 6755 | 100 | Plus |
| Rh50-RC | 1974 | CG7499-RC | 326..1675 | 16..1365 | 6750 | 100 | Plus |
| Rh50-RB | 2773 | CG7499-RB | 326..1675 | 16..1365 | 6750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4913695..4913956 | 521..782 | 1310 | 100 | Plus |
| 3L | 28110227 | 3L | 4918320..4918515 | 974..1169 | 980 | 100 | Plus |
| 3L | 28110227 | 3L | 4917454..4917647 | 780..973 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 4910693..4910862 | 16..185 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 4912672..4912840 | 186..354 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 4913451..4913619 | 352..520 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 4918755..4918862 | 1259..1366 | 540 | 100 | Plus |
| 3L | 28110227 | 3L | 4918596..4918691 | 1169..1264 | 480 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 264..320 | 452..508 | 114 | 66.7 | Plus |
BS05335.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:40 Download gff for
BS05335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:42 Download gff for
BS05335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 308..1658 | 16..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:59 Download gff for
BS05335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 327..1676 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:40 Download gff for
BS05335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 308..1658 | 16..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:04 Download gff for
BS05335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh50-RA | 327..1676 | 17..1366 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:04 Download gff for
BS05335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4910694..4910862 | 17..185 | 100 | -> | Plus |
| 3L | 4912672..4912840 | 186..354 | 100 | -> | Plus |
| 3L | 4913454..4913619 | 355..520 | 100 | -> | Plus |
| 3L | 4913695..4913956 | 521..782 | 100 | -> | Plus |
| 3L | 4917457..4917647 | 783..973 | 100 | -> | Plus |
| 3L | 4918320..4918514 | 974..1168 | 100 | -> | Plus |
| 3L | 4918596..4918689 | 1169..1262 | 100 | -> | Plus |
| 3L | 4918759..4918862 | 1263..1366 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:59 Download gff for
BS05335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4910694..4910862 | 17..185 | 100 | -> | Plus |
| arm_3L | 4912672..4912840 | 186..354 | 100 | -> | Plus |
| arm_3L | 4913454..4913619 | 355..520 | 100 | -> | Plus |
| arm_3L | 4913695..4913956 | 521..782 | 100 | -> | Plus |
| arm_3L | 4917457..4917647 | 783..973 | 100 | -> | Plus |
| arm_3L | 4918320..4918514 | 974..1168 | 100 | -> | Plus |
| arm_3L | 4918596..4918689 | 1169..1262 | 100 | -> | Plus |
| arm_3L | 4918759..4918862 | 1263..1366 | 100 | | Plus |
BS05335.pep Sequence
Translation from 16 to 1365
> BS05335.pep
MHSPAAKVSGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANE
HVSKYPQFQDIQVMIFIGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVL
MKGFLHMEGGKISLSLENIIDADIAAAVPLISMGALLGRTTPIQLLCMSV
FEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALMLRPASDQN
ETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERAILNTFLS
LAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGA
VLIGIIAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPALISAIASA
IYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFG
IAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKEE*
BS05335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh50-PC | 460 | CG7499-PC | 1..449 | 1..449 | 2295 | 100 | Plus |
| Rh50-PB | 460 | CG7499-PB | 1..449 | 1..449 | 2295 | 100 | Plus |
| Rh50-PA | 449 | CG7499-PA | 1..449 | 1..449 | 2295 | 100 | Plus |
