Clone Sequence Records
BS05336.3prime Sequence
860 bp (819 high quality bases) assembled on 2005-12-02
> BS05336.3prime
ATGGTCTAGAAAGCTTTCAAACTTGCGTCACGCACTGCGCGTATTTGTCC
AGTTCGCTCCTCAAAATCTTGACGCGTTCAGCTTCCGATTTCAGGGCATT
TACCAGCTCCTCAATGGTTCGCTGTTGGTTTAGCACCAGCCCCTCCAGCT
TATCCACCCGTTGCTCCAATTGGGCCACCCTTGAGGAACTGGCATCCTGG
TGGTTGTTCAGCTGGCTGGTGGGCTTCTCCTCCTGGGACTGCGAGCTGCT
GGCATTGGAGCTCTTTACCAGAGGCGAAACACTTCGTTGATTTCGTATAG
CTAGACTGTTTGGCCTTGTGGCTCTCGTCTCCTCGTCGCTGCTGGCGGTT
TGGACTTTGGCAGCCGACAAGCTGCGCGACATGATGGCATCGTTGGTGGT
GGTGTGGGAGCTACTGGTGATCACCGAGCTGCTGGTCGTTGAGTTCTCCA
CAAACATGGAGGAGGTCACCGCTGAAGATTGGACTTTCGTTGTGATACTG
CTGCTATTGCTGCTGACAGCTTGCTCGGCCGCAAAGAGTTTGGATGTCCT
TTCGGCCACCGAAGCTCCTCGTGGCTCCACACTGGGTGAGGTCTTTTTCC
TGGTGACCTGCGAGGCCTTCAGCTCCTCCATCCAAGGCGCCTTCTTCTTC
TCCCACTCACGTGGCTTGGGTTTGGCCAACTGTGGTTCCTCGCCGGTGGA
ATTGTCATCAGAAGTCTTCCCTCCAGCACCGCCATCTTCACTCAACTCAC
TGGCACTTCCTGCTCCACCAGATCCGGACATTCCACTGCCATTTACATAT
ACGGAATTGTTATTACTTTCGCCCAGCACATTGATAGCCGCCGATGGTGG
ACGTCTCTTT
BS05336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31012-PC | 2649 | CG31012-RC | 1806..2649 | 860..17 | 4220 | 100 | Minus |
| CG31012-PD | 1908 | CG31012-RD | 1065..1908 | 860..17 | 4220 | 100 | Minus |
| CG31012-PB | 1614 | CG31012-RB | 771..1614 | 860..17 | 4220 | 100 | Minus |
| CG31012-PA | 1638 | CG31012-RA | 771..1595 | 860..36 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 2637..3480 | 860..17 | 4220 | 100 | Minus |
| cindr-RI | 2225 | CG31012-RI | 877..1720 | 860..17 | 4220 | 100 | Minus |
| cindr-RH | 2281 | CG31012-RH | 933..1776 | 860..17 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30825202..30826045 | 860..17 | 4220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:00:51 has no hits.
BS05336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:25 Download gff for
BS05336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PB | 771..1614 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:36:00 Download gff for
BS05336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PB | 771..1614 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:31:32 Download gff for
BS05336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 933..1778 | 13..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:57:43 Download gff for
BS05336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 933..1778 | 13..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:57:43 Download gff for
BS05336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30825202..30826047 | 13..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:31:32 Download gff for
BS05336.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650924..26651769 | 13..860 | 99 | | Minus |
BS05336.5prime Sequence
884 bp (829 high quality bases) assembled on 2005-12-02
> BS05336.5prime
GAAGTTATCAGTCGACATGACCACAACGAACTCAAGCAATTCCAGCACCA
CCTCGGTGACCACGCAGCAGCAGAAGGAGCAGATCGGAGGCAGTTCCTCC
ACCACATCGAAGGTGTACATCAAGAAGACCGGGAGCAGTAGCAATAGCAC
TACCAGCAGCACCACCACAGCTTCCTCTTCGGCGGGTCGCAAGGAGAGCT
TTGGTTCCCGTGACTCCCTGAACGATATCCTTAGTGAAACGGGTCTGCCC
ACCGGCAATGTGGCTGCCCAAAGGAAATCCCTGGAGAACAAGAACCTGGA
CCTGACTAAGCCACCTGGAGTGGGAGCATCAGTGTCCATTGGACAGCAGC
GGAGCAGCACCTCTAGTGCCACCACCTCCTCAGCCACTACAGTAGCCACT
GGACTAACCTCATCATCAGTGAGCAAGTCCATGGAGAACATGCTGGACGA
GAAGGTCAAGTCGCCACCACCGCCGGTGCTCAGCAAGAAGCCCAGTGTGC
CGCTCAAGAAAACTCCCACCGGCGGAGTTCCTATGACTGGTAACCTTTTG
GGCGGCAAGAAAAAGAATACCGAGGGAAAGCTCACCACTGCCGTGTCCCA
TGATTTGGCGGATGGTCTTGCGGCCAGCAAGATGCTTTCAGGTGCTAATC
AACTACCTGAATCTGGAGCAGCTGGCAATGTGGTGATCCGGAGAGCTGCC
ACGATTGCAGTGGAGGATACAGATTTCGATCGCGTGGAGAGGGCTTCCAT
ACTCACGGATATGCGGCAAGGAAGGGTCAAGGCGCCAAAGAGACGTCCAC
CATCGGCGGCTATCAATGTGCTGGGCGAAAGTATAACAATTCCGTATATG
TAAATGGCAGTGGAATGTCCGGATCTGGTGAAGC
BS05336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31012-PC | 2649 | CG31012-RC | 1034..1852 | 15..833 | 4095 | 100 | Plus |
| CG31012-PD | 1908 | CG31012-RD | 293..1111 | 15..833 | 4095 | 100 | Plus |
| CG31012-PB | 1614 | CG31012-RB | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG31012-PA | 1638 | CG31012-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG31012-PC | 2649 | CG31012-RC | 1853..1900 | 833..880 | 240 | 100 | Plus |
| CG31012-PD | 1908 | CG31012-RD | 1112..1159 | 833..880 | 240 | 100 | Plus |
| CG31012-PB | 1614 | CG31012-RB | 818..865 | 833..880 | 240 | 100 | Plus |
| CG31012-PA | 1638 | CG31012-RA | 818..865 | 833..880 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 1865..2735 | 15..884 | 4315 | 99.8 | Plus |
| cindr-RI | 2225 | CG31012-RI | 105..975 | 15..884 | 4315 | 99.8 | Plus |
| cindr-RH | 2281 | CG31012-RH | 161..1031 | 15..884 | 4315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30824362..30824888 | 15..541 | 2635 | 100 | Plus |
| 3R | 32079331 | 3R | 30824954..30825300 | 539..884 | 1670 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-13 01:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1092..1142 | 123..171 | 114 | 74.5 | Plus |
BS05336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:08:26 Download gff for
BS05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PC | 1029..1904 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:36:01 Download gff for
BS05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PD | 288..1163 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:35 Download gff for
BS05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..1031 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:14:07 Download gff for
BS05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..1031 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:14:07 Download gff for
BS05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30824357..30824886 | 9..539 | 99 | -> | Plus |
| 3R | 30824955..30825300 | 540..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:35 Download gff for
BS05336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650079..26650608 | 9..539 | 99 | -> | Plus |
| arm_3R | 26650677..26651022 | 540..884 | 99 | | Plus |
BS05336.complete Sequence
1646 bp (1646 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635099
> BS05336.complete
GAAGTTATCAGTCGACATGACCACAACGAACTCAAGCAATTCCAGCACCA
CCTCGGTGACCACGCAGCAGCAGAAGGAGCAGATCGGAGGCAGTTCCTCC
ACCACATCGAAGGTGTACATCAAGAAGACCGGGAGCAGTAGCAATAGCAC
TACCAGCAGCACCACCACAGCTTCCTCTTCGGCGGGTCGCAAGGAGAGCT
TTGGTTCCCGTGACTCCCTGAACGATATCCTTAGTGAAACGGGTCTGCCC
ACCGGCAATGTGGCTGCCCAAAGGAAATCCCTGGAGAACAAGAACCTGGA
CCTGACTAAGCCACCTGGAGTGGGAGCATCAGTGTCCATTGGACAGCAGC
GGAGCAGCACCTCTAGTGCCACCACCTCCTCAGCCACTACAGTAGCCACT
GGACTAACCTCATCATCAGTGAGCAAGTCCATGGAGAACATGCTGGACGA
GAAGGTCAAGTCGCCACCACCGCCGGTGCTCAGCAAGAAGCCCAGTGTGC
CGCTCAAGAAAACTCCCACCGGCGGAGTTCCTATGACTGGTAACCTTTTG
GGCGGCAAGAAAAAGAATACCGAGGGAAAGCTCACCACTGCCGTGTCCCA
TGATTTGGCGGATGGTCTTGCGGCCAGCAAGATGCTTTCAGGTGCTAATC
AACTACCTGAATCTGGAGCAGCTGGCAATGTGGTGATCCGGAGAGCTGCC
ACGATTGCAGTGGAGGATACAGATTTCGATCGCGTGGAGAGGGCTTCCAT
ACTCACGGATATGCGGCAAGGAAGGGTCAAGGCGCCAAAGAGACGTCCAC
CATCGGCGGCTATCAATGTGCTGGGCGAAAGTAATAACAATTCCGTATAT
GTAAATGGCAGTGGAATGTCCGGATCTGGTGGAGCAGGAAGTGCCAGTGA
GTTGAGTGAAGATGGCGGTGCTGGAGGGAAGACTTCTGATGACAATTCCA
CCGGCGAGGAACCACAGTTGGCCAAACCCAAGCCACGTGAGTGGGAGAAG
AAGAAGGCGCCTTGGATGGAGGAGCTGAAGGCCTCGCAGGTCACCAGGAA
AAAGACCTCACCCAGTGTGGAGCCACGAGGAGCTTCGGTGGCCGAAAGGA
CATCCAAACTCTTTGCGGCCGAGCAAGCTGTCAGCAGCAATAGCAGCAGT
ATCACAACGAAAGTCCAATCTTCAGCGGTGACCTCCTCCATGTTTGTGGA
GAACTCAACGACCAGCAGCTCGGTGATCACCAGTAGCTCCCACACCACCA
CCAACGATGCCATCATGTCGCGCAGCTTGTCGGCTGCCAAAGTCCAAACC
GCCAGCAGCGACGAGGAGACGAGAGCCACAAGGCCAAACAGTCTAGCTAT
ACGAAATCAACGAAGTGTTTCGCCTCTGGTAAAGAGCTCCAATGCCAGCA
GCTCGCAGTCCCAGGAGGAGAAGCCCACCAGCCAGCTGAACAACCACCAG
GATGCCAGTTCCTCAAGGGTGGCCCAATTGGAGCAACGGGTGGATAAGCT
GGAGGGGCTGGTGCTAAACCAACAGCGAACCATTGAGGAGCTGGTAAATG
CCCTGAAATCGGAAGCTGAACGCGTCAAGATTTTGAGGAGCGAACTGGAC
AAATACGCGCAGTGCGTGACGCAAGTTTGAAAGCTTTCTAGACCAT
BS05336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 2826 | CG31012-PJ | 1211..2826 | 15..1630 | 8080 | 100 | Plus |
| cindr-RG | 2085 | CG31012-PG | 470..2085 | 15..1630 | 8080 | 100 | Plus |
| cindr-RF | 2079 | CG31012-PF | 464..2079 | 15..1630 | 8080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 1865..3480 | 15..1630 | 8080 | 100 | Plus |
| cindr-RI | 2225 | CG31012-RI | 105..1720 | 15..1630 | 8080 | 100 | Plus |
| cindr-RH | 2281 | CG31012-RH | 161..1776 | 15..1630 | 8080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30824954..30826045 | 539..1630 | 5460 | 100 | Plus |
| 3R | 32079331 | 3R | 30824362..30824888 | 15..541 | 2635 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1092..1142 | 123..171 | 114 | 74.5 | Plus |
BS05336.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:41 Download gff for
BS05336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-RD | 288..1908 | 9..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:44 Download gff for
BS05336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-RB | 182..1804 | 9..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:49 Download gff for
BS05336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 163..1775 | 17..1629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:41 Download gff for
BS05336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-RB | 182..1804 | 9..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:03 Download gff for
BS05336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 163..1775 | 17..1629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:03 Download gff for
BS05336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30824364..30824886 | 17..539 | 100 | -> | Plus |
| 3R | 30824955..30826044 | 540..1629 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:49 Download gff for
BS05336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650086..26650608 | 17..539 | 100 | -> | Plus |
| arm_3R | 26650677..26651766 | 540..1629 | 100 | | Plus |
BS05336.pep Sequence
Translation from 16 to 1629
> BS05336.pep
MTTTNSSNSSTTSVTTQQQKEQIGGSSSTTSKVYIKKTGSSSNSTTSSTT
TASSSAGRKESFGSRDSLNDILSETGLPTGNVAAQRKSLENKNLDLTKPP
GVGASVSIGQQRSSTSSATTSSATTVATGLTSSSVSKSMENMLDEKVKSP
PPPVLSKKPSVPLKKTPTGGVPMTGNLLGGKKKNTEGKLTTAVSHDLADG
LAASKMLSGANQLPESGAAGNVVIRRAATIAVEDTDFDRVERASILTDMR
QGRVKAPKRRPPSAAINVLGESNNNSVYVNGSGMSGSGGAGSASELSEDG
GAGGKTSDDNSTGEEPQLAKPKPREWEKKKAPWMEELKASQVTRKKTSPS
VEPRGASVAERTSKLFAAEQAVSSNSSSITTKVQSSAVTSSMFVENSTTS
SSVITSSSHTTTNDAIMSRSLSAAKVQTASSDEETRATRPNSLAIRNQRS
VSPLVKSSNASSSQSQEEKPTSQLNNHQDASSSRVAQLEQRVDKLEGLVL
NQQRTIEELVNALKSEAERVKILRSELDKYAQCVTQV*
BS05336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-PJ | 941 | CG31012-PJ | 405..941 | 1..537 | 2621 | 100 | Plus |
| cindr-PI | 537 | CG31012-PI | 1..537 | 1..537 | 2621 | 100 | Plus |
| cindr-PH | 537 | CG31012-PH | 1..537 | 1..537 | 2621 | 100 | Plus |
| cindr-PG | 694 | CG31012-PG | 158..694 | 1..537 | 2621 | 100 | Plus |
| cindr-PF | 692 | CG31012-PF | 156..692 | 1..537 | 2621 | 100 | Plus |
