Clone Sequence Records
BS05360.3prime Sequence
924 bp (845 high quality bases) assembled on 2006-01-06
> BS05360.3prime
ATGGTCTAGAAAGCTTTTACATCTTCGCCTTGAGCGGCACTGCGTCCGCC
ATGATATGCAGGGCCATCTTTAGGCACTCCTCCGCGGAGCTAATCTGCTC
GCACGGATAGTCGTCACCGTATTGCGTGAGGAAGTCGCAGTACTTTCGAT
AGTTGCTCACCGCGAAATCATAGTTGTAGGAGCTCAGTGCCAATTCCGTG
TCATCGGTAACCGATGGCACCGTCGCCTTGTGCGGCATCATTCCGAACAT
AGGATAGTTCAGCTCGCAGCCCTCGCATTTGCAGTCGAAGCGGTACTGCA
GGGACAGCCTTTTCAAACGCTGCTCCTTGCTGCAGATGGCGAAGTGAGCA
CCGTAATTGTCGTAGAGCACATTTCCCGCCTTAATAGGCCGCAGGACGAA
CATGTACGCCTTGGTGCCCTCGTATATCCTTACAGTATTCGGCGCACAAG
AGTGATTTATGAGCGAGAGGAAGGCGTACGCCCCAGACGAGTGCGTCTGG
TCGTCCTTGGTCTCGTTAACCTGCTCGACCAGGTCGATGCCGTGCATATT
CGAGGGAGATGTCTGCAGATGTCGGAACAGGAGGTCCGTGAAGAAGTTCA
CGCCTTCTTCGCCGCCCAAATATTCCTTGACGGGTGTGTATTCGATTATG
AAGTGCTTGAGCACAGCACAGACCACGGAGCGCTGGAAGAGATCGGAGAC
GGAGCGCAGGTGCTGGTTTGTCACCAGTCCATGGATGGCCCGGTAGTGCT
CCTCCGGCGTCAGCTCGTTGTAGTTGAGGTCAAAGGCGCACTTGTCCTGG
TTCTGCTCCTGCTCACAGAAGTCAATTAGCTCCTCGATGCTGGGAAAGAT
ATCAGCGCGACCAGTGTGGTGCGCAGTGCGATACAGTGGATCTTTGTGAA
CATGCCGGTCAGAAAGCCAATGAT
BS05360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8378-PA | 1722 | CG8378-RA | 887..1722 | 852..17 | 4180 | 100 | Minus |
CG8378-PA | 1722 | CG8378-RA | 814..886 | 924..852 | 240 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8378-RA | 2474 | CG8378-RA | 1134..2042 | 924..17 | 4445 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12141820..12142394 | 924..351 | 2750 | 99 | Minus |
2R | 25286936 | 2R | 12142506..12142840 | 351..17 | 1675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 15:09:33 has no hits.
BS05360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:09:06 Download gff for
BS05360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-PA | 814..1722 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:36:56 Download gff for
BS05360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-PA | 814..1722 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:03:01 Download gff for
BS05360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 1134..2042 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:42:05 Download gff for
BS05360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 1134..2042 | 17..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:42:05 Download gff for
BS05360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12141820..12142394 | 351..924 | 98 | -> | Minus |
2R | 12142507..12142840 | 17..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:03:01 Download gff for
BS05360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8029325..8029899 | 351..924 | 98 | -> | Minus |
arm_2R | 8030012..8030345 | 17..350 | 100 | | Minus |
BS05360.5prime Sequence
924 bp (879 high quality bases) assembled on 2005-12-02
> BS05360.5prime
GAAGTTATCAGTCGACATGGACGTGTACGACGTGAGCGATGATCTGATAA
AGAAGCTGCAGGACTGGAAACTAATCGGCATCATATCCGGCAAGTTCAAC
GAGCTGAAGGAGAACCATCGCAAGGTTGACTTCGTGATGCGCGCTCTTAT
TGACTTCAAGTACATTGAAAAGATATTCCTGAATGTAACGCTTCGAGAGG
ACAAGTGCAACAAGCGGAGCGTGGAGTTCCGTATGCTGGGCAACGAGCAG
TTTTCGCTCAAGAACAGGAATTACTTCCAGGCTCTAGAGCTGTACAACAA
AAGCATCTGTTATGCCGAACCGAATTCGGAGCACCTGTCCATCGGCTATG
CTAATCGGTCGGCGGTACTATTCGAGTGGAAGCGCTATCGGCAATGCCTG
GACAATATCAAGCTGGCAAGGCAGGCCAACTATCCGGCGAGACTGAGCCA
CAAACTAGACAAGCGAGAAAGGGACTGCCAACAGCTACTCGATCAGCAAC
CGCCGGATGTGGTGCCCTATGAGTTCAAGCTCAGTTTCGAACCGCATGCC
CAGGTGCCCTTCATCGCCGACTGTTTGGAGTTGCGCGAAACCGCCGCCGA
GGGTCGCTTTGTGGTGACCAATCGGGATTTGGCCGTTGGGGATCTTGTGT
CCGTGGAGGAGCCCTTCTGCTCCACACTGCTGACGCCGATGCGATACATT
CGGTGTGCCACCTGCAAGCGGGAGAACTATCTGACCCTCATACCCTGCGA
CAGCTGCTGTTCCACGATGTTCTGCTCCGAGGAGTGCAAGTCGATTGCCA
TGCAAACCTATCACCGCTACGAGTGCCCCATCATTGACTTTCTGAACCGC
ATGTTCAACAAGATCCACTGTATCGCACTGCGCACCACACTGGTCGCGCT
GAATATCTTTCCCAGCATCGAGGA
BS05360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8378-PA | 1722 | CG8378-RA | 1..908 | 17..924 | 4540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8378-RA | 2474 | CG8378-RA | 321..1228 | 17..924 | 4540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12141268..12141914 | 278..924 | 3235 | 100 | Plus |
2R | 25286936 | 2R | 12140951..12141215 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:13:29 has no hits.
BS05360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:09:08 Download gff for
BS05360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-PA | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:36:57 Download gff for
BS05360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-PA | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:33 Download gff for
BS05360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 313..1227 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:09 Download gff for
BS05360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 313..1227 | 9..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:09 Download gff for
BS05360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12140943..12141214 | 9..280 | 98 | -> | Plus |
2R | 12141271..12141913 | 281..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:33 Download gff for
BS05360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8028448..8028719 | 9..280 | 98 | -> | Plus |
arm_2R | 8028776..8029418 | 281..923 | 100 | | Plus |
BS05360.complete Sequence
1754 bp assembled on 2007-10-26
GenBank Submission: FJ635100
> BS05360.complete
GAAGTTATCAGTCGACATGGACGTGTACGACGTGAGCGATGATCTGATAA
AGAAGCTGCAGGACTGGAAACTAATCGGCATCATATCCGGCAAGTTCAAC
GAGCTGAAGGAGAACCATCGCAAGGTTGACTTCGTGATGCGCGCTCTTAT
TGACTTCAAGTACATTGAAAAGATATTCCTGAATGTAACGCTTCGAGAGG
ACAAGTGCAACAAGCGGAGCGTGGAGTTCCGTATGCTGGGCAACGAGCAG
TTTTCGCTCAAGAACAGGAATTACTTCCAGGCTCTAGAGCTGTACAACAA
AAGCATCTGTTATGCCGAACCGAATTCGGAGCACCTGTCCATCGGCTATG
CTAATCGGTCGGCGGTACTATTCGAGTGGAAGCGCTATCGGCAATGCCTG
GACAATATCAAGCTGGCAAGGCAGGCCAACTATCCGGCGAGACTGAGCCA
CAAACTAGACAAGCGAGAAAGGGACTGCCAACAGCTACTCGATCAGCAAC
CGCCGGATGTGGTGCCCTATGAGTTCAAGCTCAGTTTCGAACCGCATGCC
CAGGTGCCCTTCATCGCCGACTGTTTGGAGTTGCGCGAAACCGCCGCCGA
GGGTCGCTTTGTGGTGACCAATCGGGATTTGGCCGTTGGGGATCTTGTGT
CCGTGGAGGAGCCCTTCTGCTCCACACTGCTGACGCCGATGCGATACATT
CGGTGTGCCACCTGCAAGCGGGAGAACTATCTGACCCTCATACCCTGCGA
CAGCTGCTGTTCCACGATGTTCTGCTCCGAGGAGTGCAAGTCGATTGCCA
TGCAAACCTATCACCGCTACGAGTGCCCCATCATTGACTTTCTGAACCGC
ATGTTCAACAAGATCCACTGTATCGCACTGCGCACCACACTGGTCGCGCT
GAATATCTTTCCCAGCATCGAGGAGCTAATTGACTTCTGTGAGCAGGAGC
AGAACCAGGACAAGTGCGCCTTTGACCTCAACTACAACGAGCTGACGCCG
GAGGAGCACTACCGGGCCATCCATGGACTGGTGACAAACCAGCACCTGCG
CTCCGTCTCCGATCTCTTCCAGCGCTCCGTGGTCTGTGCTGTGCTCAAGC
ACTTCATAATCGAATACACACCCGTCAAGGAATATTTGGGCGGCGAAGAA
GGCGTGAACTTCTTCACGGACCTCCTGTTCCGACATCTGCAGACATCTCC
CTCGAATATGCACGGCATCGACCTGGTCGAGCAGGTTAACGAGACCAAGG
ACGACCAGACGCACTCGTCTGGGGCGTACGCCTTCCTCTCGCTCATAAAT
CACTCTTGTGCGCCGAATACTGTAAGGATATACGAGGGCACCAAGGCGTA
CATGTTCGTCCTGCGGCCTATTAAGGCGGGAAATGTGCTCTACGACAATT
ACGGTGCTCACTTCGCCATCTGCAGCAAGGAGCAGCGTTTGAAAAGGCTG
TCCCTGCAGTACCGCTTCGACTGCAAATGCGAGGGCTGCGAGCTGAACTA
TCCTATGTTCGGAATGATGCCGCACAAGGCGACGGTGCCATCGGTTACCG
ATGACACGGAATTGGCACTGAGCTCCTACAACTATGATTTCGCGGTGAGC
AACTATCGAAAGTACTGCGACTTCCTCACGCAATACGGTGACGACTATCC
GTGCGAGCAGATTAGCTCCGCGGAGGAGTGCCTAAAGATGGCCCTGCATA
TCATGGCGGACGCAGTGCCGCTCAAGGCGAAGATGTAAAAGCTTTCTAGA
CCAT
BS05360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8378-RA | 1722 | CG8378-PA | 1..1722 | 17..1738 | 8610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8378-RA | 2474 | CG8378-RA | 321..2042 | 17..1738 | 8610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12141268..12142394 | 278..1404 | 5635 | 100 | Plus |
2R | 25286936 | 2R | 12142506..12142840 | 1404..1738 | 1675 | 100 | Plus |
2R | 25286936 | 2R | 12140951..12141215 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:22:15 has no hits.
BS05360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:46 Download gff for
BS05360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 1..1722 | 17..1738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:50 Download gff for
BS05360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 339..2068 | 9..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:03 Download gff for
BS05360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 321..2040 | 17..1736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:40 Download gff for
BS05360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 347..2066 | 17..1736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:06 Download gff for
BS05360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8378-RA | 321..2040 | 17..1736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:06 Download gff for
BS05360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12140951..12141214 | 17..280 | 100 | -> | Plus |
2R | 12141271..12142394 | 281..1404 | 100 | -> | Plus |
2R | 12142507..12142838 | 1405..1736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:03 Download gff for
BS05360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8028456..8028719 | 17..280 | 100 | -> | Plus |
arm_2R | 8028776..8029899 | 281..1404 | 100 | -> | Plus |
arm_2R | 8030012..8030343 | 1405..1736 | 100 | | Plus |
BS05360.pep Sequence
Translation from 16 to 1737
> BS05360.pep
MDVYDVSDDLIKKLQDWKLIGIISGKFNELKENHRKVDFVMRALIDFKYI
EKIFLNVTLREDKCNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYA
EPNSEHLSIGYANRSAVLFEWKRYRQCLDNIKLARQANYPARLSHKLDKR
ERDCQQLLDQQPPDVVPYEFKLSFEPHAQVPFIADCLELRETAAEGRFVV
TNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATCKRENYLTLIPCDSCCST
MFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPS
IEELIDFCEQEQNQDKCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDL
FQRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHG
IDLVEQVNETKDDQTHSSGAYAFLSLINHSCAPNTVRIYEGTKAYMFVLR
PIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGM
MPHKATVPSVTDDTELALSSYNYDFAVSNYRKYCDFLTQYGDDYPCEQIS
SAEECLKMALHIMADAVPLKAKM*
BS05360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8378-PA | 573 | CG8378-PA | 1..573 | 1..573 | 3061 | 100 | Plus |
CG7759-PA | 660 | CG7759-PA | 84..548 | 80..502 | 396 | 25.3 | Plus |
Smyd4-PA | 663 | CG14122-PA | 240..547 | 171..497 | 258 | 26.8 | Plus |
CG1868-PC | 751 | CG1868-PC | 62..554 | 64..496 | 227 | 22.9 | Plus |
CG1868-PB | 751 | CG1868-PB | 62..554 | 64..496 | 227 | 22.9 | Plus |