Clone BS05360 Report

Search the DGRC for BS05360

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:53
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG8378-RA
Protein status:BS05360.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05360.3prime Sequence

924 bp (845 high quality bases) assembled on 2006-01-06

> BS05360.3prime
ATGGTCTAGAAAGCTTTTACATCTTCGCCTTGAGCGGCACTGCGTCCGCC
ATGATATGCAGGGCCATCTTTAGGCACTCCTCCGCGGAGCTAATCTGCTC
GCACGGATAGTCGTCACCGTATTGCGTGAGGAAGTCGCAGTACTTTCGAT
AGTTGCTCACCGCGAAATCATAGTTGTAGGAGCTCAGTGCCAATTCCGTG
TCATCGGTAACCGATGGCACCGTCGCCTTGTGCGGCATCATTCCGAACAT
AGGATAGTTCAGCTCGCAGCCCTCGCATTTGCAGTCGAAGCGGTACTGCA
GGGACAGCCTTTTCAAACGCTGCTCCTTGCTGCAGATGGCGAAGTGAGCA
CCGTAATTGTCGTAGAGCACATTTCCCGCCTTAATAGGCCGCAGGACGAA
CATGTACGCCTTGGTGCCCTCGTATATCCTTACAGTATTCGGCGCACAAG
AGTGATTTATGAGCGAGAGGAAGGCGTACGCCCCAGACGAGTGCGTCTGG
TCGTCCTTGGTCTCGTTAACCTGCTCGACCAGGTCGATGCCGTGCATATT
CGAGGGAGATGTCTGCAGATGTCGGAACAGGAGGTCCGTGAAGAAGTTCA
CGCCTTCTTCGCCGCCCAAATATTCCTTGACGGGTGTGTATTCGATTATG
AAGTGCTTGAGCACAGCACAGACCACGGAGCGCTGGAAGAGATCGGAGAC
GGAGCGCAGGTGCTGGTTTGTCACCAGTCCATGGATGGCCCGGTAGTGCT
CCTCCGGCGTCAGCTCGTTGTAGTTGAGGTCAAAGGCGCACTTGTCCTGG
TTCTGCTCCTGCTCACAGAAGTCAATTAGCTCCTCGATGCTGGGAAAGAT
ATCAGCGCGACCAGTGTGGTGCGCAGTGCGATACAGTGGATCTTTGTGAA
CATGCCGGTCAGAAAGCCAATGAT

BS05360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-PA 1722 CG8378-RA 887..1722 852..17 4180 100 Minus
CG8378-PA 1722 CG8378-RA 814..886 924..852 240 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-RA 2474 CG8378-RA 1134..2042 924..17 4445 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12141820..12142394 924..351 2750 99 Minus
2R 25286936 2R 12142506..12142840 351..17 1675 100 Minus
Blast to na_te.dros performed on 2015-02-08 15:09:33 has no hits.

BS05360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:09:06 Download gff for BS05360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8378-PA 814..1722 17..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:36:56 Download gff for BS05360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8378-PA 814..1722 17..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:03:01 Download gff for BS05360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 1134..2042 17..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:42:05 Download gff for BS05360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 1134..2042 17..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:42:05 Download gff for BS05360.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12141820..12142394 351..924 98 -> Minus
2R 12142507..12142840 17..350 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:03:01 Download gff for BS05360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8029325..8029899 351..924 98 -> Minus
arm_2R 8030012..8030345 17..350 100   Minus

BS05360.5prime Sequence

924 bp (879 high quality bases) assembled on 2005-12-02

> BS05360.5prime
GAAGTTATCAGTCGACATGGACGTGTACGACGTGAGCGATGATCTGATAA
AGAAGCTGCAGGACTGGAAACTAATCGGCATCATATCCGGCAAGTTCAAC
GAGCTGAAGGAGAACCATCGCAAGGTTGACTTCGTGATGCGCGCTCTTAT
TGACTTCAAGTACATTGAAAAGATATTCCTGAATGTAACGCTTCGAGAGG
ACAAGTGCAACAAGCGGAGCGTGGAGTTCCGTATGCTGGGCAACGAGCAG
TTTTCGCTCAAGAACAGGAATTACTTCCAGGCTCTAGAGCTGTACAACAA
AAGCATCTGTTATGCCGAACCGAATTCGGAGCACCTGTCCATCGGCTATG
CTAATCGGTCGGCGGTACTATTCGAGTGGAAGCGCTATCGGCAATGCCTG
GACAATATCAAGCTGGCAAGGCAGGCCAACTATCCGGCGAGACTGAGCCA
CAAACTAGACAAGCGAGAAAGGGACTGCCAACAGCTACTCGATCAGCAAC
CGCCGGATGTGGTGCCCTATGAGTTCAAGCTCAGTTTCGAACCGCATGCC
CAGGTGCCCTTCATCGCCGACTGTTTGGAGTTGCGCGAAACCGCCGCCGA
GGGTCGCTTTGTGGTGACCAATCGGGATTTGGCCGTTGGGGATCTTGTGT
CCGTGGAGGAGCCCTTCTGCTCCACACTGCTGACGCCGATGCGATACATT
CGGTGTGCCACCTGCAAGCGGGAGAACTATCTGACCCTCATACCCTGCGA
CAGCTGCTGTTCCACGATGTTCTGCTCCGAGGAGTGCAAGTCGATTGCCA
TGCAAACCTATCACCGCTACGAGTGCCCCATCATTGACTTTCTGAACCGC
ATGTTCAACAAGATCCACTGTATCGCACTGCGCACCACACTGGTCGCGCT
GAATATCTTTCCCAGCATCGAGGA

BS05360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-PA 1722 CG8378-RA 1..908 17..924 4540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-RA 2474 CG8378-RA 321..1228 17..924 4540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12141268..12141914 278..924 3235 100 Plus
2R 25286936 2R 12140951..12141215 17..281 1325 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:13:29 has no hits.

BS05360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:09:08 Download gff for BS05360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8378-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:36:57 Download gff for BS05360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8378-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:33 Download gff for BS05360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 313..1227 9..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:09 Download gff for BS05360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 313..1227 9..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:09 Download gff for BS05360.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12140943..12141214 9..280 98 -> Plus
2R 12141271..12141913 281..923 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:33 Download gff for BS05360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8028448..8028719 9..280 98 -> Plus
arm_2R 8028776..8029418 281..923 100   Plus

BS05360.complete Sequence

1754 bp assembled on 2007-10-26

GenBank Submission: FJ635100

> BS05360.complete
GAAGTTATCAGTCGACATGGACGTGTACGACGTGAGCGATGATCTGATAA
AGAAGCTGCAGGACTGGAAACTAATCGGCATCATATCCGGCAAGTTCAAC
GAGCTGAAGGAGAACCATCGCAAGGTTGACTTCGTGATGCGCGCTCTTAT
TGACTTCAAGTACATTGAAAAGATATTCCTGAATGTAACGCTTCGAGAGG
ACAAGTGCAACAAGCGGAGCGTGGAGTTCCGTATGCTGGGCAACGAGCAG
TTTTCGCTCAAGAACAGGAATTACTTCCAGGCTCTAGAGCTGTACAACAA
AAGCATCTGTTATGCCGAACCGAATTCGGAGCACCTGTCCATCGGCTATG
CTAATCGGTCGGCGGTACTATTCGAGTGGAAGCGCTATCGGCAATGCCTG
GACAATATCAAGCTGGCAAGGCAGGCCAACTATCCGGCGAGACTGAGCCA
CAAACTAGACAAGCGAGAAAGGGACTGCCAACAGCTACTCGATCAGCAAC
CGCCGGATGTGGTGCCCTATGAGTTCAAGCTCAGTTTCGAACCGCATGCC
CAGGTGCCCTTCATCGCCGACTGTTTGGAGTTGCGCGAAACCGCCGCCGA
GGGTCGCTTTGTGGTGACCAATCGGGATTTGGCCGTTGGGGATCTTGTGT
CCGTGGAGGAGCCCTTCTGCTCCACACTGCTGACGCCGATGCGATACATT
CGGTGTGCCACCTGCAAGCGGGAGAACTATCTGACCCTCATACCCTGCGA
CAGCTGCTGTTCCACGATGTTCTGCTCCGAGGAGTGCAAGTCGATTGCCA
TGCAAACCTATCACCGCTACGAGTGCCCCATCATTGACTTTCTGAACCGC
ATGTTCAACAAGATCCACTGTATCGCACTGCGCACCACACTGGTCGCGCT
GAATATCTTTCCCAGCATCGAGGAGCTAATTGACTTCTGTGAGCAGGAGC
AGAACCAGGACAAGTGCGCCTTTGACCTCAACTACAACGAGCTGACGCCG
GAGGAGCACTACCGGGCCATCCATGGACTGGTGACAAACCAGCACCTGCG
CTCCGTCTCCGATCTCTTCCAGCGCTCCGTGGTCTGTGCTGTGCTCAAGC
ACTTCATAATCGAATACACACCCGTCAAGGAATATTTGGGCGGCGAAGAA
GGCGTGAACTTCTTCACGGACCTCCTGTTCCGACATCTGCAGACATCTCC
CTCGAATATGCACGGCATCGACCTGGTCGAGCAGGTTAACGAGACCAAGG
ACGACCAGACGCACTCGTCTGGGGCGTACGCCTTCCTCTCGCTCATAAAT
CACTCTTGTGCGCCGAATACTGTAAGGATATACGAGGGCACCAAGGCGTA
CATGTTCGTCCTGCGGCCTATTAAGGCGGGAAATGTGCTCTACGACAATT
ACGGTGCTCACTTCGCCATCTGCAGCAAGGAGCAGCGTTTGAAAAGGCTG
TCCCTGCAGTACCGCTTCGACTGCAAATGCGAGGGCTGCGAGCTGAACTA
TCCTATGTTCGGAATGATGCCGCACAAGGCGACGGTGCCATCGGTTACCG
ATGACACGGAATTGGCACTGAGCTCCTACAACTATGATTTCGCGGTGAGC
AACTATCGAAAGTACTGCGACTTCCTCACGCAATACGGTGACGACTATCC
GTGCGAGCAGATTAGCTCCGCGGAGGAGTGCCTAAAGATGGCCCTGCATA
TCATGGCGGACGCAGTGCCGCTCAAGGCGAAGATGTAAAAGCTTTCTAGA
CCAT

BS05360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-RA 1722 CG8378-PA 1..1722 17..1738 8610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-RA 2474 CG8378-RA 321..2042 17..1738 8610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12141268..12142394 278..1404 5635 100 Plus
2R 25286936 2R 12142506..12142840 1404..1738 1675 100 Plus
2R 25286936 2R 12140951..12141215 17..281 1325 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:22:15 has no hits.

BS05360.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:46 Download gff for BS05360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 1..1722 17..1738 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:34:50 Download gff for BS05360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 339..2068 9..1738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:03 Download gff for BS05360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 321..2040 17..1736 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:40 Download gff for BS05360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 347..2066 17..1736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:06 Download gff for BS05360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8378-RA 321..2040 17..1736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:06 Download gff for BS05360.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12140951..12141214 17..280 100 -> Plus
2R 12141271..12142394 281..1404 100 -> Plus
2R 12142507..12142838 1405..1736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:03 Download gff for BS05360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8028456..8028719 17..280 100 -> Plus
arm_2R 8028776..8029899 281..1404 100 -> Plus
arm_2R 8030012..8030343 1405..1736 100   Plus

BS05360.pep Sequence

Translation from 16 to 1737

> BS05360.pep
MDVYDVSDDLIKKLQDWKLIGIISGKFNELKENHRKVDFVMRALIDFKYI
EKIFLNVTLREDKCNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYA
EPNSEHLSIGYANRSAVLFEWKRYRQCLDNIKLARQANYPARLSHKLDKR
ERDCQQLLDQQPPDVVPYEFKLSFEPHAQVPFIADCLELRETAAEGRFVV
TNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATCKRENYLTLIPCDSCCST
MFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPS
IEELIDFCEQEQNQDKCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDL
FQRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHG
IDLVEQVNETKDDQTHSSGAYAFLSLINHSCAPNTVRIYEGTKAYMFVLR
PIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGM
MPHKATVPSVTDDTELALSSYNYDFAVSNYRKYCDFLTQYGDDYPCEQIS
SAEECLKMALHIMADAVPLKAKM*

BS05360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8378-PA 573 CG8378-PA 1..573 1..573 3061 100 Plus
CG7759-PA 660 CG7759-PA 84..548 80..502 396 25.3 Plus
Smyd4-PA 663 CG14122-PA 240..547 171..497 258 26.8 Plus
CG1868-PC 751 CG1868-PC 62..554 64..496 227 22.9 Plus
CG1868-PB 751 CG1868-PB 62..554 64..496 227 22.9 Plus