Clone Sequence Records
BS05366.3prime Sequence
894 bp (806 high quality bases) assembled on 2005-12-02
> BS05366.3prime
ATGGTCTAGAAAGCTTCTAGATGTACTTGAAGCACTTTTGCTTGTCGTGC
GGGATGCGCGTCTTGAAGAGAATGGAGTCCGCTCGGTACTGGGTGTTCAG
CAGCGGCGTATAGCCGAACACCCGGCTAAAGAAATTGATGCACTTGTGCC
GCTCCTGGAAGTGAGTGTCATCCTCGCTGAGTGAAACAGGACAGCCGGGG
CAGCGGAATGTCCACCTGGAGGTGACTTTGACTGGTGGTTTTCTAGTTAT
ATGCGATACGAGAAAATTCATGGCAATGTCCTCACAGTTCATGTACTCAT
CCACCTTGTCCCTTATCGCCTGCGGCAGATGGTAGGTGTACAGGTAAAGA
TAGTACTTGTGTACAAACGCAGCTCCTGTCAGCACCATGCTCAGTTCGCA
GCTGTAATTGGAGTTGTAGTGCCACTGGCCATTGGGATTTCCCAAATCCC
AAGCGTGGTAACGTCCTGGGAAGCCTACAACTCTATCGCGATGCTCCCGC
CAAACACGGAATCCGAAGAGAATCTCATCATGACGCAGATGGGCATCGTC
GTCGACAGAGAGAACAGCCTCGGTTTCAATGACATCAAAAGGCAGAAATC
GGTTGTTTAACGAATTCCTGGGAGCCCGAAGGACGGCAACTGGTACTCCA
ATATCCGGCCACCTTAGGTCATCCAATGGTGGCTTCGGTGAGTTCCAAAC
CACCACGACTTTGTGCAGATACGGCAGACCATACAGTCTGCCCAATGAAT
CCATGAGGACTTGTTCTCTTTCGTAGGTTAACATAACAATGGTGAACTGC
TCCCGGGGGGAATTGCCACCCAGTGACTCGCCGAATTCCTTCCCAGCTCC
TCCCAATCCCTTTACCTATCGGACGAAAGCCTGTATGCGAGCCC
BS05366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15110-PA | 2919 | botv-RA | 2074..2919 | 862..17 | 4205 | 99.8 | Minus |
| CG15110-PA | 2919 | botv-RA | 2043..2075 | 894..862 | 165 | 100 | Minus |
| CG8433-PA | 2154 | Ext2-RA | 1854..1898 | 305..261 | 150 | 93.3 | Minus |
| CG8433-PB | 2154 | Ext2-RB | 1854..1898 | 305..261 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 3608 | CG15110-RA | 2144..3020 | 894..17 | 4350 | 99.8 | Minus |
| Ext2-RB | 2694 | CG8433-RB | 1916..1960 | 305..261 | 180 | 93.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19132242..19133118 | 894..17 | 4325 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:27:30 has no hits.
BS05366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:09:21 Download gff for
BS05366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-PA | 2043..2919 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:37:14 Download gff for
BS05366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15110-PA | 2043..2919 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:49:17 Download gff for
BS05366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 2144..3020 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:32 Download gff for
BS05366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 2144..3020 | 17..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:32 Download gff for
BS05366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19132242..19133118 | 17..894 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:49:17 Download gff for
BS05366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15019747..15020623 | 17..894 | 99 | | Minus |
BS05366.5prime Sequence
909 bp (740 high quality bases) assembled on 2005-12-02
> BS05366.5prime
GAAGTTATCAGTCGACATGCCACCGGCGTACGACCTTGGCCATTCCGGAG
AGGCGTACCAACCCCTGGACACTGGCAGCGGCGGCGGAAACGAAGCCTGT
GCCCCGAACTCATCCTCCGCGCAAATCCGCCATTCGATGGGATTCCGGAC
ATCCTGGATGCGGCAGTTCCGCCGCTACAAACTGCCCATGGTGCTGCTGA
TGCTGCTGTTTCTCGTTTCCTGCCTAGCATACCGCATCCTAAGCGTGGAG
CAAGATGCCCCGCCACTGGATCTGCATCGTAGTTCACCGCTGCTAGATGC
CTACGAAGATTTCAGCGCCATGAGAGCAGGAGATCTGAAAATGCGCATCG
AGGAGATGGTTAGAATCAAGAGCACCGTGTCCGTGGAGTTGCGCGAATTG
GAGTCCCGTCGCCAGAAGCTGCAATCGGACATTAGCCAGTACAACCAGAA
GATCGAGGAGCTCAAACAGGAACTGCTTAGGGAGCAAACAGAACTGGAGC
GCCTCAAGATCTCCGTGGAGCAGGCTCAGGTGGCCCAGCGGGAGGCTGTT
CAGCGGAATACACCGGACTTGGCCTTGCCCCGCTCTCTTTTACCCAACAC
ACTGCCAAGAAAGAGTAATCCCATCACCGGAGGGATGGCGGCCAGCTGCG
AAATGCACAACTGCTTCAATCACTCACGCTGCAGTCTAACCTCCGGATTT
CCTGTTTATCTATACGATCCGGATGAGCATAGCGTTCAGCGAAAGGGTTA
CGATATCGATGGTTTCCTAAAGACGACTCTAAAGCAGACTTTAGGATACA
ATGCTCATATAGTTAAGGATCCCAAGCATGCCTGCATATATCTAGTTCTG
GTGGGAAAGGCTCTGCTTGAGCAGGATCTATTGCGAAATAATCGCTATGC
GGCTCAGGA
BS05366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15110-PA | 2919 | botv-RA | 1..893 | 17..909 | 4440 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 3608 | CG15110-RA | 101..994 | 16..909 | 4455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19130548..19131092 | 365..909 | 2695 | 99.6 | Plus |
| 2R | 25286936 | 2R | 19129689..19129919 | 16..246 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 19130368..19130493 | 245..370 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:58:20 has no hits.
BS05366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:09:22 Download gff for
BS05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:37:15 Download gff for
BS05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15110-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:28:22 Download gff for
BS05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 101..993 | 16..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:51 Download gff for
BS05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 101..993 | 16..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:51 Download gff for
BS05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19130368..19130493 | 245..370 | 100 | -> | Plus |
| 2R | 19129689..19129917 | 16..244 | 100 | -> | Plus |
| 2R | 19130554..19131091 | 371..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:28:22 Download gff for
BS05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15017194..15017422 | 16..244 | 100 | -> | Plus |
| arm_2R | 15017873..15017998 | 245..370 | 100 | -> | Plus |
| arm_2R | 15018059..15018596 | 371..908 | 99 | | Plus |
BS05366.complete Sequence
2951 bp assembled on 2010-05-10
GenBank Submission: KX796512
> BS05366.complete
GAAGTTATCAGTCGACATGCCACCGGCGTACGACCTTGGCCATTCCGGAG
AGGCGTACCAACCCCTGGACACTGGCAGCGGCGGCGGAAACGAAGCCTGT
GCCCCGAACTCATCCTCCGCGCAAATCCGCCATTCGATGGGATTCCGGAC
ATCCTGGATGCGGCAGTTCCGCCGCTACAAACTGCCCATGGTGCTGCTGA
TGCTGCTGTTTCTCGTTTCCTGCCTAGCATACCGCATCCTAAGCGTGGAG
CAAGATGCCCCGCCACTGGATCTGCATCGTAGTTCACCGCTGCTAGATGC
CTACGAAGATTTCAGCGCCATGAGAGCAGGAGATCTGAAAATGCGCATCG
AGGAGATGGTTAGAATCAAGAGCACCGTGTCCGTGGAGTTGCGCGAATTG
GAGTCCCGTCGCCAGAAGCTGCAATCGGACATTAGCCAGTACAACCAGAA
GATCGAGGAGCTCAAACAGGAACTGCTTAGGGAGCAAACAGAACTGGAGC
GCCTCAAGATCTCCGTGGAGCAGGCTCAGGTGGCCCAGCGGGAGGCTGTT
CAGCGGAATACACCGGACTTGGCCTTGCCCCGCTCTCTTTTACCCAACAC
ACTGCCAAGAAAGAGTAATCCCATCACCGGAGGGATGGCGGCCAGCTGCG
AAATGCACAACTGCTTCAATCACTCACGCTGCAGTCTAACCTCCGGATTT
CCTGTTTATCTATACGATCCGGATGAGCATAGCGTTCAGCGAAAGGGTTA
CGATATCGATGGTTTCCTAAAGACGACTCTAAAGCAGACTTTAGGATACA
ATGCTCATATAGTTAAGGATCCCAAGCATGCCTGCATATATCTAGTTCTG
GTGGGAGAGGCTCTGCTTGAGCAGGATCTATTGCGAAATAATCGCTATGC
GGCTCAGGAGGCGGAGCATCAGCAGCCCTCGACGCCCACTCTAGAAAATG
ACTGCCCCGTGGACATGGAGAAGCTTTACAGTCTGCCATATTGGGGCGGC
GATGGTCGCAATCATGTGCTGCTCAACTTGGCGAGAAGAGATCTCACATC
ACATCGTACGAATCCTCTCTACAGGCAGAACACTATGCGAGCAATTGTGG
TGCAAAGTGCTTTTGAAAGAGAACAGTTCCGTCCAGGTTATGACCTAATT
GTGCCTCCTATTCTGGGTCCTCCTGGAGGAGATGTGTGGCAGGAGTGCGC
GGAAATGGTGCCCGCCCGAAGGAAATACCTGCTTACCTACCAAGGTGAAC
TGAGGCCCAAACAGAGTAGTTTGAACCCCTTAGATGCGTTTATTCTGGAG
CACCTGGCGGATATGGCCAAGGGCGCAACGCAAGATCAGTTCGTTCTGCA
GTTCCAGTGCGTCCCAGCTACGGAACAGCAGGAGGGTGATTCCCTGCCAG
ATTGGACGCTATGTGGTTCGGATTCATCGCGCCGCCAATTGCTTAAGGAC
TCTACGTTTTCTCTGATTTTACCCCCGTTGAATGGCAGAGTTTCGTCGAC
ACTAATGCTTGCTAGGATTTATGAAGCTCTCCGTTCGGGAGCAGTACCTG
TTATCCTTGGAGCAGATGAGTTGCGTTTGCCGTATGCTGAAACTGTAGAT
TGGAGAAGAACGGCACTACTGCTACCGAAAGCTCGGATCACAGAACTGCA
TTTCCTTCTGCGCGCGGTGCAGGATGCGGACTTATTGCTGCTGCGACGAC
AGGGGCGACTCATCTGGGAACGCTATTTGAGCTCTGTGCAGGCCACCGTG
GATACAGTGATTGCCAGTTTAAGGGATCGCCTTGGAATCCCGCCCAGACC
CGTGCCCTCGGTTATAGCGCAAAGTGTGTTCAACAGCACATTTATACCCC
TAAAATCCGATCCACCTGTTGGCTTGGATACGGAACCCGAAGAGTCGTTG
GGACCCATCGAACCACCCTATCCGAGTCCTGCTTTCCGGCGAAACTATAC
AATACTGCGTATGCAGGCGAAGGAAGCCTGGAATGATTGGCTGGATCCCT
TTTACCTTTACCCCCAGCTGCCCTTTGATCCTGCGTTGCCTTCGGAAGCC
AAGTTTATGGGCTCGCATACAGGCTTTCGTCCGATAGGTAAGGGATTGGG
AGGAGCTGGGAAGGAATTCGGCGAGTCACTGGGTGGCAATTACCCCCGGG
AGCAGTTCACCATTGTTATGTTAACCTACGAAAGAGAACAAGTCCTCATG
GATTCATTGGGCAGACTGTATGGTCTGCCGTATCTGCACAAAGTCGTGGT
GGTTTGGAACTCACCGAAGCCACCATTGGATGACCTAAGGTGGCCGGATA
TTGGAGTACCAGTTGCCGTCCTTCGGGCTCCCAGGAATTCGTTAAACAAC
CGATTTCTGCCTTTTGATGTCATTGAAACCGAGGCTGTTCTCTCTGTCGA
CGACGATGCCCATCTGCGTCATGATGAGATTCTCTTCGGATTCCGTGTTT
GGCGGGAGCATCGCGATAGAGTTGTAGGCTTCCCAGGACGTTACCACGCT
TGGGATTTGGGAAATCCCAATGGCCAGTGGCACTACAACTCCAATTACAG
CTGCGAACTGAGCATGGTGCTGACAGGAGCTGCGTTTGTACACAAGTACT
ATCTTTACCTGTACACCTACCATCTGCCGCAGGCGATAAGGGACAAGGTG
GATGAGTACATGAACTGTGAGGACATTGCCATGAATTTTCTCGTATCGCA
TATAACTAGAAAACCACCAGTCAAAGTCACCTCCAGGTGGACATTCCGCT
GCCCCGGCTGTCCTGTTTCACTCAGCGAGGATGACACTCACTTCCAGGAG
CGGCACAAGTGCATCAATTTCTTTAGCCGGGTGTTCGGCTATACGCCGCT
GCTGAACACCCAGTACCGAGCGGACTCCATTCTCTTCAAGACGCGCATCC
CGCACGACAAGCAAAAGTGCTTCAAGTACATCTAGAAGCTTTCTAGACCA
T
BS05366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 2919 | CG15110-PA | 1..2919 | 17..2935 | 14595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 3608 | CG15110-RA | 101..3020 | 16..2935 | 14600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19130548..19133118 | 365..2935 | 12840 | 100 | Plus |
| 2R | 25286936 | 2R | 19129689..19129919 | 16..246 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 19130368..19130493 | 245..370 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:10:14 has no hits.
BS05366.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:43 Download gff for
BS05366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 97..3015 | 17..2935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:25 Download gff for
BS05366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 102..3020 | 17..2935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:24 Download gff for
BS05366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 102..3020 | 17..2935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:24 Download gff for
BS05366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19129690..19129917 | 17..244 | 100 | -> | Plus |
| 2R | 19130368..19130493 | 245..370 | 100 | -> | Plus |
| 2R | 19130554..19133118 | 371..2935 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:25 Download gff for
BS05366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15017195..15017422 | 17..244 | 100 | -> | Plus |
| arm_2R | 15017873..15017998 | 245..370 | 100 | -> | Plus |
| arm_2R | 15018059..15020623 | 371..2935 | 100 | | Plus |
BS05366.pep Sequence
Translation from 16 to 2934
> BS05366.pep
MPPAYDLGHSGEAYQPLDTGSGGGNEACAPNSSSAQIRHSMGFRTSWMRQ
FRRYKLPMVLLMLLFLVSCLAYRILSVEQDAPPLDLHRSSPLLDAYEDFS
AMRAGDLKMRIEEMVRIKSTVSVELRELESRRQKLQSDISQYNQKIEELK
QELLREQTELERLKISVEQAQVAQREAVQRNTPDLALPRSLLPNTLPRKS
NPITGGMAASCEMHNCFNHSRCSLTSGFPVYLYDPDEHSVQRKGYDIDGF
LKTTLKQTLGYNAHIVKDPKHACIYLVLVGEALLEQDLLRNNRYAAQEAE
HQQPSTPTLENDCPVDMEKLYSLPYWGGDGRNHVLLNLARRDLTSHRTNP
LYRQNTMRAIVVQSAFEREQFRPGYDLIVPPILGPPGGDVWQECAEMVPA
RRKYLLTYQGELRPKQSSLNPLDAFILEHLADMAKGATQDQFVLQFQCVP
ATEQQEGDSLPDWTLCGSDSSRRQLLKDSTFSLILPPLNGRVSSTLMLAR
IYEALRSGAVPVILGADELRLPYAETVDWRRTALLLPKARITELHFLLRA
VQDADLLLLRRQGRLIWERYLSSVQATVDTVIASLRDRLGIPPRPVPSVI
AQSVFNSTFIPLKSDPPVGLDTEPEESLGPIEPPYPSPAFRRNYTILRMQ
AKEAWNDWLDPFYLYPQLPFDPALPSEAKFMGSHTGFRPIGKGLGGAGKE
FGESLGGNYPREQFTIVMLTYEREQVLMDSLGRLYGLPYLHKVVVVWNSP
KPPLDDLRWPDIGVPVAVLRAPRNSLNNRFLPFDVIETEAVLSVDDDAHL
RHDEILFGFRVWREHRDRVVGFPGRYHAWDLGNPNGQWHYNSNYSCELSM
VLTGAAFVHKYYLYLYTYHLPQAIRDKVDEYMNCEDIAMNFLVSHITRKP
PVKVTSRWTFRCPGCPVSLSEDDTHFQERHKCINFFSRVFGYTPLLNTQY
RADSILFKTRIPHDKQKCFKYI*
BS05366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-PA | 972 | CG15110-PA | 1..972 | 1..972 | 5156 | 100 | Plus |
| Ext2-PB | 717 | CG8433-PB | 450..714 | 710..972 | 617 | 46.6 | Plus |
| ttv-PC | 299 | CG10117-PC | 9..290 | 707..967 | 474 | 37.1 | Plus |
| ttv-PB | 760 | CG10117-PB | 470..751 | 707..967 | 474 | 37.1 | Plus |
| ttv-PA | 760 | CG10117-PA | 470..751 | 707..967 | 474 | 37.1 | Plus |
| ttv-PB | 760 | CG10117-PB | 89..445 | 211..608 | 248 | 26.7 | Plus |
