Clone Sequence Records
BS05404.complete Sequence
1991 bp assembled on 2009-12-07
GenBank Submission: KX799507
> BS05404.complete
GAAGTTATCAGTCGACATGAGTCTGTACAACTTCAAAAAGATCATGGTGG
TTCCGCCAGCAAAGGACTTCATCGACATTATGCTGTCGAAGACACAGCGC
AAGACCCCGACGGTGGTCCACAAGGGCTACAAAATATCCAGAATCCGGGC
ATTCTACACGCGCAAGGTGAAGTACACGCAGCAGAACTTCCACGATCGCT
TGTCGCAGATCATTCAGGACTTTCCCAAACTGGACGACGTGCATCCTTTC
TACGCCGACTTGATGAACGTGCTGTACGACAAGGATCATTACAAGCTGGC
GCTGGGTCAACTCAACACAGCCAGGCATTTGGTGGACAATGTGGCCAAGG
ACTACGTGCGCCTGCTGAAGTACGGTGACTCGCTGTATCGCTGCAAACAG
TTGAAGAAAGCTGCCCTGGGTCGCATGGCCACCATTATGAAGCGACAGGC
CTCCAATCTGACGTATCTGGAGCAAGTGCGTCAGCATCTCTCGCGTCTGC
CCACCATCGATCCCTATTCGCGTACCATCATCATCTGCGGTTTCCCCAAC
GTGGGCAAGTCCTCGTTCATCAACAAGATCACCCGCGCCGATGTGGAAGT
GCAGCCCTACGCCTTCACCACGAAATCCCTGTACGTGGGACACACAGACT
ACAAATATCTGCGCTGGCAGGTCATTGACACACCCGGCATCCTGGATCAT
CCCCTGGAAGAGCGCAATGTGATCGAAATGCAAGCCATTACTGCCTTGGC
TCATTTGCGCGCCTGCGTCCTGTACTTCATGGATATCTCCGAGCAGTGCG
GACACTCCTTGGAGGAACAGGTCAAGCTGTTCGAGAGCATCAAGCCTTTG
TTTACAAACAAACCCCTCATCCTGGCCATCAACAAGATCGATATTCTAAC
ACCAGAGGATCTGCCAGAGGAGCGACGAGCGATTATCACCAAACTACAGG
AGGACAAGAACATTCCCGTAATGCTCATGTCCACCGTACAGGAAACCGGT
GTCATGGAGGTGAAAACCGAGGCATGTGAGCGTTTGCTCTCGTACCGTGT
TGACCAGAAGATGCGCACAAAGAAGGTGGACAACATCCTGAACCGCTTGC
ATGTGGCGATGCCAGCGCCGCGAGATGACAAACTTCGTGCACCCTGCATC
CCAGAAAAGGCCTCGGCGCGCCTGCTACAGAATGCCGACAAGGCAGAGCG
CAAGCGCAAGCTGGAGAAGGAGATCGAGGAGGAGATGGGCGACGACTACA
CGCTGGACCTCAAGAAGAACTACAGCGAAATCCCCGAGGAGGAGCGCTAC
GACATTATTCCAGAGTTCTGGCAGGGTCACAACATTGCCGACTACATCGA
TGCCGACATCTTCGACAAGCTGGAGGAGCTGGAGCGCGAGGAGGGACTGC
GGGAGGAGAGCGGCGTCTACAAGGTGCCCGATATGACCATGGACGAGACG
CTCAAGGAGATCCGCGAGATAGCCAAGCAAATCCGTGGCAAGCGCTTCGA
GCTGCGCGACGAAAAGCGACTGTCGTCGCGAAAGAACAAGCCAGTCATCC
CACGAAACAAGCAGCCCAAGGTGCGTGACCGTTCCGTACAGAAACTGGTG
TCGACGATGGAGGGCCTCGGTGTGGACATGTCCGGCAGCGAGAACGCCAA
CTTCACCAAGTCCGTGGTGGATCTGCGTCGTGGCCAGGTGGCAGTTGGCT
CCAAGAAGGTGCCCATGCAGCCGCTGCTCGACAAGGAGTCCTCTGCGGTG
GTCAGGAAGACTGGTCAGCCTCTGAAGCGGGCGCCGTCGCGCGACACACT
GGGCATCAAGAACTTGGCCATTCGCAAGAAGGCGCAAATTATGGCCAAGC
GGGATATTGCCAAGAAGGTCACAAGCAGGGGTCTCAAGGGCGAGGCGGAT
CGCTTCATCGGCACCAAGATGCCGAAGCATTTGTTCTCCGGCAAGCGTGG
AAATGGCAAGACGGATCGCCGTTAAAAGCTTTCTAGACCAT
BS05404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 1959 | CG8801-PB | 1..1959 | 17..1975 | 9795 | 100 | Plus |
| Non1-RA | 1959 | CG8801-PA | 1..1959 | 17..1975 | 9795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 2276 | CG8801-RB | 104..2062 | 17..1975 | 9795 | 100 | Plus |
| Non1-RA | 2181 | CG8801-RA | 104..2062 | 17..1975 | 9795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9396479..9398114 | 1975..340 | 8180 | 100 | Minus |
| 2R | 25286936 | 2R | 9398184..9398460 | 339..63 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 9398583..9398631 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:25:17 has no hits.
BS05404.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:48 Download gff for
BS05404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 120..2076 | 17..1973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:50 Download gff for
BS05404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 104..2060 | 17..1973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:55 Download gff for
BS05404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 120..2076 | 17..1973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:01 Download gff for
BS05404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Non1-RA | 104..2060 | 17..1973 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:01 Download gff for
BS05404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9396481..9398114 | 340..1973 | 100 | <- | Minus |
| 2R | 9398184..9398458 | 65..339 | 100 | <- | Minus |
| 2R | 9398584..9398631 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:50 Download gff for
BS05404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5283986..5285619 | 340..1973 | 100 | <- | Minus |
| arm_2R | 5285689..5285963 | 65..339 | 100 | <- | Minus |
| arm_2R | 5286089..5286136 | 17..64 | 100 | | Minus |
BS05404.3prime Sequence
926 bp (827 high quality bases) assembled on 2005-12-02
> BS05404.3prime
ATGGTCTAGAAAGCTTTTAACGGCGATCCGTCTTGCCATTTCCACGCTTG
CCGGAGAACAAATGCTTCGGCATCTTGGTGCCGATGAAGCGATCCGCCTC
GCCCTTGAGACCCCTGCTTGTGACCTTCTTGGCAATATCCCGCTTGGCCA
TAATTTGCGCCTTCTTGCGAATGGCCAAGTTCTTGATGCCCAGTGTGTCG
CGCGACGGCGCCCGCTTCAGAGGCTGACCAGTCTTCCTGACCACCGCAGA
GGACTCCTTGTCGAGCAGCGGCTGCATGGGCACCTTCTTGGAGCCAACTG
CCACCTGGCCACGACGCAGATCCACCACGGACTTGGTGAAGTTGGCGTTC
TCGCTGCCGGACATGTCCACACCGAGGCCCTCCATCGTCGACACCAGTTT
CTGTACGGAACGGTCACGCACCTTGGGCTGCTTGTTTCGTGGGATGACTG
GCTTGTTCTTTCGCGACGACAGTCGCTTTTCGTCGCGCAGCTCGAAGCGC
TTGCCACGGATTTGCTTGGCTATCTCGCGGATCTCCTTGAGCGTCTCGTC
CATGGTCATATCGGGCACCTTGTAGACGCCGCTCTCCTCCCGCAGTCCCT
CCTCGCGCTCCAGCTCCTCCAGCTTGTCGAAGATGTCGGCATCGATGTAG
TCGGCAATGTTGTGACCCTGCCAGAACTCTGGAATAATGTCGTAGCGCTC
CTCCTCGGGGATTTCGCTGTAGTTCTTCTTGAGGTCCAGCGTGTAGTCGT
CGCCCATCTCCTCCTCGATCTCCTTCTCCAGCTTGCGCTTGCGCTCTGCC
TTGTCGGCATTCTGTAGCAGGCGCGCCGAGGCCTTTTCTGGGATGCAGGG
TGCACGAAGTTTGTCATCTCGCGGCGCTGGCATCGCCACATGCAAGCGGT
TCAGGATGTTGTCCACCTTCTTTGTG
BS05404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8801-PA | 1959 | CG8801-RA | 1050..1959 | 926..17 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 2276 | CG8801-RB | 1153..2062 | 926..17 | 4550 | 100 | Minus |
| Non1-RA | 2181 | CG8801-RA | 1153..2062 | 926..17 | 4550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9396479..9397388 | 17..926 | 4550 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:27:05 has no hits.
BS05404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:16 Download gff for
BS05404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-PA | 1050..1959 | 17..926 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:23 Download gff for
BS05404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-PA | 1050..1959 | 17..926 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:13:49 Download gff for
BS05404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 1153..2064 | 13..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:31 Download gff for
BS05404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Non1-RA | 1153..2064 | 13..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:31 Download gff for
BS05404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9396475..9397388 | 13..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:13:49 Download gff for
BS05404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5283980..5284893 | 13..926 | 99 | | Plus |
BS05404.5prime Sequence
871 bp (819 high quality bases) assembled on 2005-12-02
> BS05404.5prime
GAAGTTATCAGTCGACATGAGTCTGTACAACTTCAAAAAGATCATGGTGG
TTCCGCCAGCAAAGGACTTCATCGACATTATGCTGTCGAAGACACAGCGC
AAGACCCCGACGGTGGTCCACAAGGGCTACAAAATATCCAGAATCCGGGC
ATTCTACACGCGCAAGGTGAAGTACACGCAGCAGAACTTCCACGATCGCT
TGTCGCAGATCATTCAGGACTTTCCCAAACTGGACGACGTGCATCCTTTC
TACGCCGACTTGATGAACGTGCTGTACGACAAGGATCATTACAAGCTGGC
GCTGGGTCAACTCAACACAGCCAGGCATTTGGTGGACAATGTGGCCAAGG
ACTACGTGCGCCTGCTGAAGTACGGTGACTCGCTGTATCGCTGCAAACAG
TTGAAGAAAGCTGCCCTGGGTCGCATGGCCACCATTATGAAGCGACAGGC
CTCCAATCTGACGTATCTGGAGCAAGTGCGTCAGCATCTCTCGCGTCTGC
CCACCATCGATCCCTATTCGCGTACCATCATCATCTGCGGTTTCCCCAAC
GTGGGCAAGTCCTCGTTCATCAACAAGATCACCCGCGCCGATGTGGAAGT
GCAGCCCTACGCCTTCACCACGAAATCCCTGTACGTGGGACACACAGACT
ACAAATATCTGCGCTGGCAGGTCATTGACACACCCGGCATCCTGGATCAT
CCCCTGGAAGAGCGCAATGTGATCGAAATGCAAGCCATTACTGCCTTGGC
TCATTTGCGCGCCTGCGTCCTGTACTTCATGGATATCTCCGAGCAGTGCG
GACACTCCTTGGAGGAACAGGTNCAGCTGTTCGAGAGCATCAAGCCTTTG
TTTACAACAAACCCCTCATCC
BS05404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8801-PA | 1959 | CG8801-RA | 1..841 | 17..857 | 4161 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 2276 | CG8801-RB | 104..959 | 17..871 | 4229 | 99.6 | Plus |
| Non1-RA | 2181 | CG8801-RA | 104..959 | 17..871 | 4229 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9397582..9398114 | 871..340 | 2589 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9398184..9398460 | 339..63 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 9398583..9398631 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:31:24 has no hits.
BS05404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:17 Download gff for
BS05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-PA | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:25 Download gff for
BS05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-PA | 1..856 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:55 Download gff for
BS05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 104..959 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:02 Download gff for
BS05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Non1-RA | 104..959 | 17..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:02 Download gff for
BS05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9397582..9398114 | 340..871 | 99 | <- | Minus |
| 2R | 9398184..9398458 | 65..339 | 100 | <- | Minus |
| 2R | 9398584..9398631 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:55 Download gff for
BS05404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5285087..5285619 | 340..871 | 99 | <- | Minus |
| arm_2R | 5285689..5285963 | 65..339 | 100 | <- | Minus |
| arm_2R | 5286089..5286136 | 17..64 | 100 | | Minus |
BS05404.pep Sequence
Translation from 16 to 1974
> BS05404.pep
MSLYNFKKIMVVPPAKDFIDIMLSKTQRKTPTVVHKGYKISRIRAFYTRK
VKYTQQNFHDRLSQIIQDFPKLDDVHPFYADLMNVLYDKDHYKLALGQLN
TARHLVDNVAKDYVRLLKYGDSLYRCKQLKKAALGRMATIMKRQASNLTY
LEQVRQHLSRLPTIDPYSRTIIICGFPNVGKSSFINKITRADVEVQPYAF
TTKSLYVGHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAITALAHLRAC
VLYFMDISEQCGHSLEEQVKLFESIKPLFTNKPLILAINKIDILTPEDLP
EERRAIITKLQEDKNIPVMLMSTVQETGVMEVKTEACERLLSYRVDQKMR
TKKVDNILNRLHVAMPAPRDDKLRAPCIPEKASARLLQNADKAERKRKLE
KEIEEEMGDDYTLDLKKNYSEIPEEERYDIIPEFWQGHNIADYIDADIFD
KLEELEREEGLREESGVYKVPDMTMDETLKEIREIAKQIRGKRFELRDEK
RLSSRKNKPVIPRNKQPKVRDRSVQKLVSTMEGLGVDMSGSENANFTKSV
VDLRRGQVAVGSKKVPMQPLLDKESSAVVRKTGQPLKRAPSRDTLGIKNL
AIRKKAQIMAKRDIAKKVTSRGLKGEADRFIGTKMPKHLFSGKRGNGKTD
RR*
BS05404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-PB | 652 | CG8801-PB | 1..652 | 1..652 | 3340 | 100 | Plus |
| Non1-PA | 652 | CG8801-PA | 1..652 | 1..652 | 3340 | 100 | Plus |
