Clone BS05406 Report

Search the DGRC for BS05406

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptspd-2-RA
Protein status:BS05406.pep: full length peptide match
Sequenced Size:3473

Clone Sequence Records

BS05406.complete Sequence

3473 bp assembled on 2009-12-07

GenBank Submission: KX798262

> BS05406.complete
GAAGTTATCAGTCGACATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCA
GTTTCATGGACCAGAACTCGCTGGGCATCCTGAACATGGACAATCTAAAG
GTCTTCGGCGACTTGTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCAC
TGGTCGGGACTCTCCCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGC
GTGCGCTGGAGACACTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCA
AAGAGCACTGCCCTCCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGT
AACAGACGACACCATCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCA
CGCCCGCCACCAAGGGCACAAACATCTCTTTTGAGCCTGCGGAGATCACC
GGCAGGTCCACACTCTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCC
ATCCCTGTCGGTGGCCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTC
GCCTGTTGGAAAGGAAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTAT
CACTTATCACGTGGCAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTC
GCGCAGCTTACCGCGCACTGCGGACATGAGTGAACTGAGTCTTAACGGAG
GTGGGGGATTTTCCTTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGAT
GAGAGCTTTGCTCCCGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGA
AATCTCCTGGGCGCAGGAGTTCACGGCCATGCCGACGGCCACGTTGAGCA
CACAGGCGTTGAAGAAGATTGCCGCACCAACATCCGAGATAGAAACCTCG
GTGTCCAATTCTGTCTTGGCCGGAGATCCAGACTTTTCGCTGGGCAACTA
CTTCCAGACGCGTTCGGAAAATATATGGAACATTGTGAGCAATAGCAGCC
CGAATCGTTCGCGAACCAACCAACCGCTATTGGAACCAGAAAGTAACGTG
ACACTGGATTCGGTTGGCGAGAAGACCCCACAGCCAGACAATAAAACATA
CACTAAAACGGATGCCATAACTGGCTCGAATCTCGGACGCAATCTTATGC
GTAAGATGCAACAGGATCGGATTGAAACTGCGCTAAAGAGCAGGAATGGT
CTGGCAGCCAAAGAGACCAAGCGTCCGCCGTCGAGCTCCGAGATCCTAAG
TCTCTCCGCGATCGACAAGGCGCTAAGGGACATAGATCTCAATTCGGATA
CATCCACTGTAGAGGTTGTCAACCACCTGTGGGAGCATGGTCGTGGAAAC
AATTATGACGATGGGGAAAACAAGGAGAACCAGAGCAGCAACTCCCATGC
GGAGCGCACTTCGTGCGGCTCCAACAAGCTTACCGACACCATGAGTTTCA
CGGACTCTGTGCTAAACTCAACGGATTTTCGTCATTTGCAGCAGAGCATC
TCGCGCAAGCCGCTCAGTCCGCTGGCGGACCATCCGCAAATCACCATCAG
CCGTGCGGACACCGATCCCGTAGAGACAGAAGCCGAGGCGGACATCGATG
AGTGGCCCTCGACGCCGGTAAAGGAGCCTAGCCGCAGAGTGAGACGTACT
AAGATTTCTCCAAGAGCCGCAAGTCCGTCGAGTAGCGACGGCGTACGTCC
ACTGACCTGCACCGAGGATGAAAACGATGAGGAGGACGAGGACAAGACGC
CAGTGAACAAGAAGAGGGTTTCGATCGCTACAATGGGCTTGATTCCGCGC
AAAGCCTCCTCCTTAAGCAGCACTCGCTTGGATGGTTGTGACGTTGCCGT
GGCCTCTTCTACCGAACGTGATTTTGGCATTTCACCGAACCTGGCCAAAA
ATCTATCGCCCCTGTCCTCGCCAAGAAGCTGTCTCTCGTCGCCGCTGCTG
GACAGCACAACCAGTTCCGACCGCCGGCAGCTCATGAGTGGAGCAGCCCG
CAAAGCAAACTCCTCGCCCGCAGGTAGTGAGGCCAGTTCCACCAGCGGAT
TCACAGCGAGTGGAAGACGTGGGTTGGGAACCAGCTCTGTTGCAGTGCCA
CGTAGTATTTCGCGCTGCTCGAACTCTAGTGAGTTCAGTCATCGCGATGG
AAAACTGCTCCCCCTAAAGGTGACCCACACGACCCTCTGTTGGGGAAGCA
CAAAGCTGCGGACAGATGTGCGTAAGTCCATGCAGGTTAAGAACACAGCG
GACAAACGGCTGGTCATTCGGCTTGGCATCCAGGGACCCGGATTCCAGCT
GGTGGGCACCGACAGCAGCACGATCACACTCCAAGCCATGGAATGCCGCT
CGGTAGTGATCAACTTTTGCCCCACTGTCTGTGGAGCGGCCATCGGAGCC
TTGTCTTTCTATGCACCACCAGGAGCGCATAACAGCAACCAGCCGGGCCT
AGAGATTCCGTTGTACGGCTACGGGGGCAGTGCGTCCATCACCATAAACG
GTCTGCTAAAGGGACCGGTGGGCGCCAGTTTCCTTACCATCGGCGATGTA
TGCGAGCTGTCCGCTGGTCCGCTTTCGGCGAATCTCAAGTTTCACAACAA
GGGCCCTCTCACCGCTTTCGTTGGTATATCAGTGGACTCCACCGTGCTCA
TGAAACTGCGCCTCAGCGAGGCCTTCGAGGTACGTCCGAGCCGCTTGATA
TTGCCGCCAAATAGCGAGCGCTGCGTGCAGATACTTTTCCGACCGAATCG
TGAGGACTTGAAGAACATACTTAAGAAGACCGCACAGGTGTTGACCCTGG
CCAATATGCGGATTTTCTGCGGAGACGAGCCCAACAGACAGCGTATGCGT
AGCTTGGTCCAAAGGATGAGCAGCCGACAGCGAGAGAAACTCACATCGCC
GATGCTGGACAGCATTTGGGGCGAATTTCCGGACGAGCAGCCAGTGCGCA
ACATCGGTCAGCTGAACGAACCGCCAGAGTTTATTCTGGACTTGGTCACA
GTAGTGCGGATTATTGATGTTGCGCTTACCCTCAATCGGGACTTTGATGA
ATCGTCTGAGAGTTCCCTGATGTTCCTGCCGGAGGCCGACGAAACCGTGC
TATTCCGCACCATATGTGTGGCCAATTCGCCGACGCCAACGCAGAGCCAT
CTATTGGAGCCAGTGGATGAGCTATTGGAGGCGGACACCACAACGTTGAC
GCCCGTCGAGCAAAACTGGTGTGTGCAGCCAGGTTTGCTGGAATTCGGAG
TGGGCTGTTCGCCACTGGCCACTTTGTCCGTAACCAACAGCTTCTGCTCC
AGGCAGCTCATCGAGGTCACATGCAATGTGCCCGATTTGGTGCGAATCAG
TCCCAGTGAGTGCTACGTATCCCCGGATGGCGGCCACGCGGAGATCGATG
TGCGCCTGCTCCGCTCACCCAGGCAGGATTTGCTCGAAAGGGAGCCGCTC
ATTGTGGTCTCCATGGAAAACGAGCGCATCAGTGTCCCGATTAGTTTTAA
ATTTTAAAAGCTTTCTAGACCAT

BS05406.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-RA 3441 CG17286-PA 1..3441 17..3457 17205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-RA 3686 CG17286-RA 49..3491 17..3459 17215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16591402..16594002 3459..859 13005 100 Minus
3L 28110227 3L 16594064..16594821 858..101 3790 100 Minus
3L 28110227 3L 16601731..16602488 858..101 3640 98.7 Minus
3L 28110227 3L 16601089..16601576 1470..983 2380 99.2 Minus
3L 28110227 3L 16601572..16601669 956..859 475 99 Minus
3L 28110227 3L 16594882..16594966 101..17 425 100 Minus
3L 28110227 3L 16602547..16602632 102..17 325 91.9 Minus
Blast to na_te.dros performed on 2014-11-28 02:10:24 has no hits.

BS05406.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:28 Download gff for BS05406.complete
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 77..3515 17..3455 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:44 Download gff for BS05406.complete
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 49..3487 17..3455 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:24 Download gff for BS05406.complete
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 77..3515 17..3455 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:32 Download gff for BS05406.complete
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 49..3487 17..3455 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:32 Download gff for BS05406.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16591406..16594002 859..3455 100 <- Minus
3L 16594064..16594820 102..858 100 <- Minus
3L 16594882..16594966 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:44 Download gff for BS05406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16584506..16587102 859..3455 100 <- Minus
arm_3L 16587164..16587920 102..858 100 <- Minus
arm_3L 16587982..16588066 17..101 100   Minus

BS05406.3prime Sequence

944 bp (762 high quality bases) assembled on 2005-12-02

> BS05406.3prime
ATGGTCTAGAAAGCTTTTAAAATTTAAAACTAATCGGGACACTGATGCGC
TCGTTTTCCATGGAGACCACAATGAGCGGCTCCCTTTCGAGCAAATCCTG
CCTGGGTGAGCGGAGCAGGCGCACATCGATCTCCGCGTGGCCGCCATCCG
GGGATACGTAGCACTCACTGGGACTGATTCGCACCAAATCGGGCACATTG
CATGTGACCTCGATGAGCTGCCTGGAGCAGAAGCTGTTGGTTACGGACAA
AGTGGCCAGTGGCGAACAGCCCACTCCGAATTCCAGCAAACCTGGCTGCA
CACACCAGTTTTGCTCGACGGGCGTCAACGTTGTGGTGTCCGCCTCCAAT
AGCTCATCCACTGGCTCCAATAGATGGCTCTGCGTTGGCGTCGGCGAATT
GGCCACACATATGGTGCGGAATAGCACGGTTTCGTCGGCCTCCGGCAGGA
ACATCAGGGAACTCTCAGACGATTCATCAAAGTCCCGATTGAGGGTAAGC
GCAACATCAATAATCCGCACTACTGTGACCAAGTCCAGAATAAACTCTGG
CGGTTCGTTCAGCTGACCGATGTTGCGCACTGGCTGCTCGTCCGGAAATT
CGCCCCAAATGCTGTCCAGCATCGGCGATGTGAGTTTCTCTCGCTGTCGG
CTGCTCATCCTTTGGACCAAGCTACGCATACGCTGTCTGTTGGGCTCGTC
TCCGCAGAAAATCCGCATATTGGCCAGGGTCAACACCTGTGCGGTCTTCT
TAAGTATGTTCTTCAAGTCCTCACGATTCGGTCGGAAAAGTATCTGCACG
CAGCGCTCGCTATTTGGCGGCAATATCAAGCGGCTCGGACGTACCTCGAA
GGCCTCGCTGAGGCGCAGTTTCATGAGCACGGTGGAGTCCACTGATATAC
AACGAAAGCGGTGAGAGGGCCCTTGTTGTGAAACTTGAGATTCG

BS05406.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17286-PA 3441 CG17286-RA 2558..3441 900..17 4420 100 Minus
CG17286-PA 3441 CG17286-RA 2513..2557 944..900 225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-RA 3686 CG17286-RA 2561..3491 944..15 4630 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16591402..16592332 15..944 4605 99.9 Plus
Blast to na_te.dros performed on 2015-02-09 02:01:26 has no hits.

BS05406.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:18 Download gff for BS05406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17286-PA 2513..3441 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:26 Download gff for BS05406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17286-PA 2513..3441 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:59:56 Download gff for BS05406.3prime
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 2561..3494 10..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:12:38 Download gff for BS05406.3prime
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 2561..3494 10..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:12:38 Download gff for BS05406.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16591399..16592332 10..944 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:59:56 Download gff for BS05406.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16584499..16585432 10..944 99   Plus

BS05406.5prime Sequence

810 bp (755 high quality bases) assembled on 2005-12-02

> BS05406.5prime
GAAGTTATCAGTCGACATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCA
GTTTCATGGACCAGAACTCGCTGGGCATCCTGAACATGGACAATCTAAAG
GTCTTCGGCGACTTGTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCAC
TGGTCGGGACTCTCCCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGC
GTGCGCTGGAGACACTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCA
AAGAGCACTGCCCTCCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGT
AACAGACGACACCATCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCA
CGCCCGCCACCAAGGGCACAAACATCTCTTTTGAGCCTGCGGAGATCACC
GGCAGGTCCACACTCTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCC
ATCCCTGTCGGTGGCCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTC
GCCTGTTGGAAAGGAAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTAT
CACTTATCACGTGGCAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTC
GCGCAGCTTACCGCGCACTGCGGACATGAGTGAACTGAGTCTTAACGGAG
GTGGGGGATTTTCCTTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGAT
GAGAGCTTTGCTCCCGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGA
AATCTCCTGGGCGCAGGAGTTCACGGCCATGCCGACGGCCACGTTGAGCA
CACAGGCGTT

BS05406.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17286-PA 3441 CG17286-RA 1..794 17..810 3970 100 Plus
CG18217-PA 1797 CG18217-RA 1..794 17..810 3545 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-RA 3686 CG17286-RA 49..842 17..810 3970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16594112..16594821 810..101 3550 100 Minus
3L 28110227 3L 16601779..16602488 810..101 3400 98.6 Minus
3L 28110227 3L 16594882..16594966 101..17 425 100 Minus
3L 28110227 3L 16602547..16602632 102..17 325 91.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:13:33 has no hits.

BS05406.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:19 Download gff for BS05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17286-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:27 Download gff for BS05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17286-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:48:47 Download gff for BS05406.5prime
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 43..842 10..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:06 Download gff for BS05406.5prime
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 43..842 10..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:06 Download gff for BS05406.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16594112..16594820 102..810 100 <- Minus
3L 16594882..16594972 10..101 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:48:47 Download gff for BS05406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16587212..16587920 102..810 100 <- Minus
arm_3L 16587982..16588072 10..101 96   Minus

BS05406.pep Sequence

Translation from 16 to 3456

> BS05406.pep
MDSSSGSQGNGSFMDQNSLGILNMDNLKVFGDLSSFSKSGRRSGTGRDSP
AVHERLREERLRALETLEKPRPSRSSQAKSTALQMRLSTNISELVTDDTI
DLNSSSSFALVTPATKGTNISFEPAEITGRSTLCQAGKQRRREKPSLSVA
EILKSSFVEKARLLERKLQDASQAEASYHLSRGSSSSLSDSFNCSRSLPR
TADMSELSLNGGGGFSFGSASLAAEGQDESFAPAELMQSKLVLGEISWAQ
EFTAMPTATLSTQALKKIAAPTSEIETSVSNSVLAGDPDFSLGNYFQTRS
ENIWNIVSNSSPNRSRTNQPLLEPESNVTLDSVGEKTPQPDNKTYTKTDA
ITGSNLGRNLMRKMQQDRIETALKSRNGLAAKETKRPPSSSEILSLSAID
KALRDIDLNSDTSTVEVVNHLWEHGRGNNYDDGENKENQSSNSHAERTSC
GSNKLTDTMSFTDSVLNSTDFRHLQQSISRKPLSPLADHPQITISRADTD
PVETEAEADIDEWPSTPVKEPSRRVRRTKISPRAASPSSSDGVRPLTCTE
DENDEEDEDKTPVNKKRVSIATMGLIPRKASSLSSTRLDGCDVAVASSTE
RDFGISPNLAKNLSPLSSPRSCLSSPLLDSTTSSDRRQLMSGAARKANSS
PAGSEASSTSGFTASGRRGLGTSSVAVPRSISRCSNSSEFSHRDGKLLPL
KVTHTTLCWGSTKLRTDVRKSMQVKNTADKRLVIRLGIQGPGFQLVGTDS
STITLQAMECRSVVINFCPTVCGAAIGALSFYAPPGAHNSNQPGLEIPLY
GYGGSASITINGLLKGPVGASFLTIGDVCELSAGPLSANLKFHNKGPLTA
FVGISVDSTVLMKLRLSEAFEVRPSRLILPPNSERCVQILFRPNREDLKN
ILKKTAQVLTLANMRIFCGDEPNRQRMRSLVQRMSSRQREKLTSPMLDSI
WGEFPDEQPVRNIGQLNEPPEFILDLVTVVRIIDVALTLNRDFDESSESS
LMFLPEADETVLFRTICVANSPTPTQSHLLEPVDELLEADTTTLTPVEQN
WCVQPGLLEFGVGCSPLATLSVTNSFCSRQLIEVTCNVPDLVRISPSECY
VSPDGGHAEIDVRLLRSPRQDLLEREPLIVVSMENERISVPISFKF*

BS05406.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-PA 1146 CG17286-PA 1..1146 1..1146 5804 100 Plus