Clone Sequence Records
BS05406.complete Sequence
3473 bp assembled on 2009-12-07
GenBank Submission: KX798262
> BS05406.complete
GAAGTTATCAGTCGACATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCA
GTTTCATGGACCAGAACTCGCTGGGCATCCTGAACATGGACAATCTAAAG
GTCTTCGGCGACTTGTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCAC
TGGTCGGGACTCTCCCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGC
GTGCGCTGGAGACACTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCA
AAGAGCACTGCCCTCCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGT
AACAGACGACACCATCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCA
CGCCCGCCACCAAGGGCACAAACATCTCTTTTGAGCCTGCGGAGATCACC
GGCAGGTCCACACTCTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCC
ATCCCTGTCGGTGGCCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTC
GCCTGTTGGAAAGGAAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTAT
CACTTATCACGTGGCAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTC
GCGCAGCTTACCGCGCACTGCGGACATGAGTGAACTGAGTCTTAACGGAG
GTGGGGGATTTTCCTTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGAT
GAGAGCTTTGCTCCCGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGA
AATCTCCTGGGCGCAGGAGTTCACGGCCATGCCGACGGCCACGTTGAGCA
CACAGGCGTTGAAGAAGATTGCCGCACCAACATCCGAGATAGAAACCTCG
GTGTCCAATTCTGTCTTGGCCGGAGATCCAGACTTTTCGCTGGGCAACTA
CTTCCAGACGCGTTCGGAAAATATATGGAACATTGTGAGCAATAGCAGCC
CGAATCGTTCGCGAACCAACCAACCGCTATTGGAACCAGAAAGTAACGTG
ACACTGGATTCGGTTGGCGAGAAGACCCCACAGCCAGACAATAAAACATA
CACTAAAACGGATGCCATAACTGGCTCGAATCTCGGACGCAATCTTATGC
GTAAGATGCAACAGGATCGGATTGAAACTGCGCTAAAGAGCAGGAATGGT
CTGGCAGCCAAAGAGACCAAGCGTCCGCCGTCGAGCTCCGAGATCCTAAG
TCTCTCCGCGATCGACAAGGCGCTAAGGGACATAGATCTCAATTCGGATA
CATCCACTGTAGAGGTTGTCAACCACCTGTGGGAGCATGGTCGTGGAAAC
AATTATGACGATGGGGAAAACAAGGAGAACCAGAGCAGCAACTCCCATGC
GGAGCGCACTTCGTGCGGCTCCAACAAGCTTACCGACACCATGAGTTTCA
CGGACTCTGTGCTAAACTCAACGGATTTTCGTCATTTGCAGCAGAGCATC
TCGCGCAAGCCGCTCAGTCCGCTGGCGGACCATCCGCAAATCACCATCAG
CCGTGCGGACACCGATCCCGTAGAGACAGAAGCCGAGGCGGACATCGATG
AGTGGCCCTCGACGCCGGTAAAGGAGCCTAGCCGCAGAGTGAGACGTACT
AAGATTTCTCCAAGAGCCGCAAGTCCGTCGAGTAGCGACGGCGTACGTCC
ACTGACCTGCACCGAGGATGAAAACGATGAGGAGGACGAGGACAAGACGC
CAGTGAACAAGAAGAGGGTTTCGATCGCTACAATGGGCTTGATTCCGCGC
AAAGCCTCCTCCTTAAGCAGCACTCGCTTGGATGGTTGTGACGTTGCCGT
GGCCTCTTCTACCGAACGTGATTTTGGCATTTCACCGAACCTGGCCAAAA
ATCTATCGCCCCTGTCCTCGCCAAGAAGCTGTCTCTCGTCGCCGCTGCTG
GACAGCACAACCAGTTCCGACCGCCGGCAGCTCATGAGTGGAGCAGCCCG
CAAAGCAAACTCCTCGCCCGCAGGTAGTGAGGCCAGTTCCACCAGCGGAT
TCACAGCGAGTGGAAGACGTGGGTTGGGAACCAGCTCTGTTGCAGTGCCA
CGTAGTATTTCGCGCTGCTCGAACTCTAGTGAGTTCAGTCATCGCGATGG
AAAACTGCTCCCCCTAAAGGTGACCCACACGACCCTCTGTTGGGGAAGCA
CAAAGCTGCGGACAGATGTGCGTAAGTCCATGCAGGTTAAGAACACAGCG
GACAAACGGCTGGTCATTCGGCTTGGCATCCAGGGACCCGGATTCCAGCT
GGTGGGCACCGACAGCAGCACGATCACACTCCAAGCCATGGAATGCCGCT
CGGTAGTGATCAACTTTTGCCCCACTGTCTGTGGAGCGGCCATCGGAGCC
TTGTCTTTCTATGCACCACCAGGAGCGCATAACAGCAACCAGCCGGGCCT
AGAGATTCCGTTGTACGGCTACGGGGGCAGTGCGTCCATCACCATAAACG
GTCTGCTAAAGGGACCGGTGGGCGCCAGTTTCCTTACCATCGGCGATGTA
TGCGAGCTGTCCGCTGGTCCGCTTTCGGCGAATCTCAAGTTTCACAACAA
GGGCCCTCTCACCGCTTTCGTTGGTATATCAGTGGACTCCACCGTGCTCA
TGAAACTGCGCCTCAGCGAGGCCTTCGAGGTACGTCCGAGCCGCTTGATA
TTGCCGCCAAATAGCGAGCGCTGCGTGCAGATACTTTTCCGACCGAATCG
TGAGGACTTGAAGAACATACTTAAGAAGACCGCACAGGTGTTGACCCTGG
CCAATATGCGGATTTTCTGCGGAGACGAGCCCAACAGACAGCGTATGCGT
AGCTTGGTCCAAAGGATGAGCAGCCGACAGCGAGAGAAACTCACATCGCC
GATGCTGGACAGCATTTGGGGCGAATTTCCGGACGAGCAGCCAGTGCGCA
ACATCGGTCAGCTGAACGAACCGCCAGAGTTTATTCTGGACTTGGTCACA
GTAGTGCGGATTATTGATGTTGCGCTTACCCTCAATCGGGACTTTGATGA
ATCGTCTGAGAGTTCCCTGATGTTCCTGCCGGAGGCCGACGAAACCGTGC
TATTCCGCACCATATGTGTGGCCAATTCGCCGACGCCAACGCAGAGCCAT
CTATTGGAGCCAGTGGATGAGCTATTGGAGGCGGACACCACAACGTTGAC
GCCCGTCGAGCAAAACTGGTGTGTGCAGCCAGGTTTGCTGGAATTCGGAG
TGGGCTGTTCGCCACTGGCCACTTTGTCCGTAACCAACAGCTTCTGCTCC
AGGCAGCTCATCGAGGTCACATGCAATGTGCCCGATTTGGTGCGAATCAG
TCCCAGTGAGTGCTACGTATCCCCGGATGGCGGCCACGCGGAGATCGATG
TGCGCCTGCTCCGCTCACCCAGGCAGGATTTGCTCGAAAGGGAGCCGCTC
ATTGTGGTCTCCATGGAAAACGAGCGCATCAGTGTCCCGATTAGTTTTAA
ATTTTAAAAGCTTTCTAGACCAT
BS05406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spd-2-RA | 3441 | CG17286-PA | 1..3441 | 17..3457 | 17205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spd-2-RA | 3686 | CG17286-RA | 49..3491 | 17..3459 | 17215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16591402..16594002 | 3459..859 | 13005 | 100 | Minus |
3L | 28110227 | 3L | 16594064..16594821 | 858..101 | 3790 | 100 | Minus |
3L | 28110227 | 3L | 16601731..16602488 | 858..101 | 3640 | 98.7 | Minus |
3L | 28110227 | 3L | 16601089..16601576 | 1470..983 | 2380 | 99.2 | Minus |
3L | 28110227 | 3L | 16601572..16601669 | 956..859 | 475 | 99 | Minus |
3L | 28110227 | 3L | 16594882..16594966 | 101..17 | 425 | 100 | Minus |
3L | 28110227 | 3L | 16602547..16602632 | 102..17 | 325 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:10:24 has no hits.
BS05406.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:28 Download gff for
BS05406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spd-2-RA | 77..3515 | 17..3455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:44 Download gff for
BS05406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spd-2-RA | 49..3487 | 17..3455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:24 Download gff for
BS05406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spd-2-RA | 77..3515 | 17..3455 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:32 Download gff for
BS05406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spd-2-RA | 49..3487 | 17..3455 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:32 Download gff for
BS05406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16591406..16594002 | 859..3455 | 100 | <- | Minus |
3L | 16594064..16594820 | 102..858 | 100 | <- | Minus |
3L | 16594882..16594966 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:44 Download gff for
BS05406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16584506..16587102 | 859..3455 | 100 | <- | Minus |
arm_3L | 16587164..16587920 | 102..858 | 100 | <- | Minus |
arm_3L | 16587982..16588066 | 17..101 | 100 | | Minus |
BS05406.3prime Sequence
944 bp (762 high quality bases) assembled on 2005-12-02
> BS05406.3prime
ATGGTCTAGAAAGCTTTTAAAATTTAAAACTAATCGGGACACTGATGCGC
TCGTTTTCCATGGAGACCACAATGAGCGGCTCCCTTTCGAGCAAATCCTG
CCTGGGTGAGCGGAGCAGGCGCACATCGATCTCCGCGTGGCCGCCATCCG
GGGATACGTAGCACTCACTGGGACTGATTCGCACCAAATCGGGCACATTG
CATGTGACCTCGATGAGCTGCCTGGAGCAGAAGCTGTTGGTTACGGACAA
AGTGGCCAGTGGCGAACAGCCCACTCCGAATTCCAGCAAACCTGGCTGCA
CACACCAGTTTTGCTCGACGGGCGTCAACGTTGTGGTGTCCGCCTCCAAT
AGCTCATCCACTGGCTCCAATAGATGGCTCTGCGTTGGCGTCGGCGAATT
GGCCACACATATGGTGCGGAATAGCACGGTTTCGTCGGCCTCCGGCAGGA
ACATCAGGGAACTCTCAGACGATTCATCAAAGTCCCGATTGAGGGTAAGC
GCAACATCAATAATCCGCACTACTGTGACCAAGTCCAGAATAAACTCTGG
CGGTTCGTTCAGCTGACCGATGTTGCGCACTGGCTGCTCGTCCGGAAATT
CGCCCCAAATGCTGTCCAGCATCGGCGATGTGAGTTTCTCTCGCTGTCGG
CTGCTCATCCTTTGGACCAAGCTACGCATACGCTGTCTGTTGGGCTCGTC
TCCGCAGAAAATCCGCATATTGGCCAGGGTCAACACCTGTGCGGTCTTCT
TAAGTATGTTCTTCAAGTCCTCACGATTCGGTCGGAAAAGTATCTGCACG
CAGCGCTCGCTATTTGGCGGCAATATCAAGCGGCTCGGACGTACCTCGAA
GGCCTCGCTGAGGCGCAGTTTCATGAGCACGGTGGAGTCCACTGATATAC
AACGAAAGCGGTGAGAGGGCCCTTGTTGTGAAACTTGAGATTCG
BS05406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17286-PA | 3441 | CG17286-RA | 2558..3441 | 900..17 | 4420 | 100 | Minus |
CG17286-PA | 3441 | CG17286-RA | 2513..2557 | 944..900 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spd-2-RA | 3686 | CG17286-RA | 2561..3491 | 944..15 | 4630 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16591402..16592332 | 15..944 | 4605 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:01:26 has no hits.
BS05406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:18 Download gff for
BS05406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17286-PA | 2513..3441 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:26 Download gff for
BS05406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17286-PA | 2513..3441 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:59:56 Download gff for
BS05406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spd-2-RA | 2561..3494 | 10..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:12:38 Download gff for
BS05406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spd-2-RA | 2561..3494 | 10..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:12:38 Download gff for
BS05406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16591399..16592332 | 10..944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:59:56 Download gff for
BS05406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16584499..16585432 | 10..944 | 99 | | Plus |
BS05406.5prime Sequence
810 bp (755 high quality bases) assembled on 2005-12-02
> BS05406.5prime
GAAGTTATCAGTCGACATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCA
GTTTCATGGACCAGAACTCGCTGGGCATCCTGAACATGGACAATCTAAAG
GTCTTCGGCGACTTGTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCAC
TGGTCGGGACTCTCCCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGC
GTGCGCTGGAGACACTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCA
AAGAGCACTGCCCTCCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGT
AACAGACGACACCATCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCA
CGCCCGCCACCAAGGGCACAAACATCTCTTTTGAGCCTGCGGAGATCACC
GGCAGGTCCACACTCTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCC
ATCCCTGTCGGTGGCCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTC
GCCTGTTGGAAAGGAAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTAT
CACTTATCACGTGGCAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTC
GCGCAGCTTACCGCGCACTGCGGACATGAGTGAACTGAGTCTTAACGGAG
GTGGGGGATTTTCCTTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGAT
GAGAGCTTTGCTCCCGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGA
AATCTCCTGGGCGCAGGAGTTCACGGCCATGCCGACGGCCACGTTGAGCA
CACAGGCGTT
BS05406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17286-PA | 3441 | CG17286-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
CG18217-PA | 1797 | CG18217-RA | 1..794 | 17..810 | 3545 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spd-2-RA | 3686 | CG17286-RA | 49..842 | 17..810 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16594112..16594821 | 810..101 | 3550 | 100 | Minus |
3L | 28110227 | 3L | 16601779..16602488 | 810..101 | 3400 | 98.6 | Minus |
3L | 28110227 | 3L | 16594882..16594966 | 101..17 | 425 | 100 | Minus |
3L | 28110227 | 3L | 16602547..16602632 | 102..17 | 325 | 91.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:13:33 has no hits.
BS05406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:19 Download gff for
BS05406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17286-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:27 Download gff for
BS05406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17286-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:48:47 Download gff for
BS05406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spd-2-RA | 43..842 | 10..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:06 Download gff for
BS05406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spd-2-RA | 43..842 | 10..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:06 Download gff for
BS05406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16594112..16594820 | 102..810 | 100 | <- | Minus |
3L | 16594882..16594972 | 10..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:48:47 Download gff for
BS05406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16587212..16587920 | 102..810 | 100 | <- | Minus |
arm_3L | 16587982..16588072 | 10..101 | 96 | | Minus |
BS05406.pep Sequence
Translation from 16 to 3456
> BS05406.pep
MDSSSGSQGNGSFMDQNSLGILNMDNLKVFGDLSSFSKSGRRSGTGRDSP
AVHERLREERLRALETLEKPRPSRSSQAKSTALQMRLSTNISELVTDDTI
DLNSSSSFALVTPATKGTNISFEPAEITGRSTLCQAGKQRRREKPSLSVA
EILKSSFVEKARLLERKLQDASQAEASYHLSRGSSSSLSDSFNCSRSLPR
TADMSELSLNGGGGFSFGSASLAAEGQDESFAPAELMQSKLVLGEISWAQ
EFTAMPTATLSTQALKKIAAPTSEIETSVSNSVLAGDPDFSLGNYFQTRS
ENIWNIVSNSSPNRSRTNQPLLEPESNVTLDSVGEKTPQPDNKTYTKTDA
ITGSNLGRNLMRKMQQDRIETALKSRNGLAAKETKRPPSSSEILSLSAID
KALRDIDLNSDTSTVEVVNHLWEHGRGNNYDDGENKENQSSNSHAERTSC
GSNKLTDTMSFTDSVLNSTDFRHLQQSISRKPLSPLADHPQITISRADTD
PVETEAEADIDEWPSTPVKEPSRRVRRTKISPRAASPSSSDGVRPLTCTE
DENDEEDEDKTPVNKKRVSIATMGLIPRKASSLSSTRLDGCDVAVASSTE
RDFGISPNLAKNLSPLSSPRSCLSSPLLDSTTSSDRRQLMSGAARKANSS
PAGSEASSTSGFTASGRRGLGTSSVAVPRSISRCSNSSEFSHRDGKLLPL
KVTHTTLCWGSTKLRTDVRKSMQVKNTADKRLVIRLGIQGPGFQLVGTDS
STITLQAMECRSVVINFCPTVCGAAIGALSFYAPPGAHNSNQPGLEIPLY
GYGGSASITINGLLKGPVGASFLTIGDVCELSAGPLSANLKFHNKGPLTA
FVGISVDSTVLMKLRLSEAFEVRPSRLILPPNSERCVQILFRPNREDLKN
ILKKTAQVLTLANMRIFCGDEPNRQRMRSLVQRMSSRQREKLTSPMLDSI
WGEFPDEQPVRNIGQLNEPPEFILDLVTVVRIIDVALTLNRDFDESSESS
LMFLPEADETVLFRTICVANSPTPTQSHLLEPVDELLEADTTTLTPVEQN
WCVQPGLLEFGVGCSPLATLSVTNSFCSRQLIEVTCNVPDLVRISPSECY
VSPDGGHAEIDVRLLRSPRQDLLEREPLIVVSMENERISVPISFKF*
BS05406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spd-2-PA | 1146 | CG17286-PA | 1..1146 | 1..1146 | 5804 | 100 | Plus |