Clone BS05408 Report

Search the DGRC for BS05408

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG7601-RA
Protein status:BS05408.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05408.3prime Sequence

777 bp (749 high quality bases) assembled on 2005-12-02

> BS05408.3prime
ATGGTCTAGAAAGCTTTCAAGTGGACTTTTTCTCAGCATTCTCCAGTTTG
ACGGCGCGCTTGGCCATGATCCAAAAGTAGAGACTCGGGCAAAGATGACG
AAGATAGTAGGCGATCTTGGCCTGGACATCGCTGACAATAATGTCCGGTT
CTTTGCGAAGAATGCACTGCAGAATGCGTTCTGCAAGTTTATCCGGTGAC
ATGCCCTTGGCCGTGGTTTCATCCACTTTGCCGTAACTGCTTCCCGATCC
TGTCAATGCATTCAAGGACAGCTGGGTGCGTATGTAGCCAGGACTCACGC
AGGACACGTTTATGTTCTTATTTGCCACCTCGGCTCGCAGGGAATCGGCA
AAAGCCTGCATGGCATGTTTCGAGGCGGAATAGGCAGCCCTTTGGGGAAT
GGCAAACTTTCCCTGAACAGAGCTAATGAAGCATATGTGACCACTACCAC
GTTTCACCATCGAAGGAAGTAGAGCTTTGGTCAGGGCAACGCTGCCAAAG
TAGTTAACCACCATCACCTTGAGATCCACATCCACTGCCGTGGATGCCAC
ATCGGCTCGCACACTGATCCCTCCGTTGTTGATGAGTATGTCCACTTGGT
TGTACACGGCCAGCACCCGGGTGACAAATTCTGGAATGGAGTTCAGTTCA
GCCAGATCCAGGGGAAGCACTGTCGGCGGATAAGCGGGATCCACATCCAA
TGCGAGGAGGTCCTTCTTAACCCGCTCCAATTCCTGAGTGCGACGTGCCG
CCAAAATAACCCTGCATCCAGCGCGGT

BS05408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-PA 981 CG7601-RA 221..981 777..17 3805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-RA 1250 CG7601-RA 315..1075 777..17 3805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29735714..29735961 229..476 1240 100 Plus
3R 32079331 3R 29736016..29736233 475..692 1090 100 Plus
3R 32079331 3R 29735444..29735655 17..228 1060 100 Plus
3R 32079331 3R 29736289..29736375 691..777 435 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:31:20 has no hits.

BS05408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:22 Download gff for BS05408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-PA 221..981 17..777 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:32 Download gff for BS05408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-PA 221..981 17..777 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:11 Download gff for BS05408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 315..1082 5..777 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:01 Download gff for BS05408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 315..1082 5..777 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:01 Download gff for BS05408.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29736290..29736375 692..777 100   Plus
3R 29735437..29735655 5..228 97 <- Plus
3R 29735714..29735959 229..474 100 <- Plus
3R 29736016..29736232 475..691 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:11 Download gff for BS05408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25561159..25561377 5..228 97 <- Plus
arm_3R 25561436..25561681 229..474 100 <- Plus
arm_3R 25561738..25561954 475..691 100 <- Plus
arm_3R 25562012..25562097 692..777 100   Plus

BS05408.5prime Sequence

784 bp (722 high quality bases) assembled on 2005-12-02

> BS05408.5prime
GAAGTTATCAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCA
GCAGCGACTGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCG
GTGGCACTTCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCA
GAAATTCCGCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCA
GTTCGGGCCTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGC
AGGGTTATTTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAA
GGACCTCCTCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTC
CCCTGGATCTGGCTGAACTGAACTCCATTCCAGAATTTGTCACCCGGGTG
CTGGCCGTGTACAACCAAGTGGACATACTCATCAACAACGGAGGGATCAG
TGTGCGAGCCGATGTGGCATCCACGGCAGTGGATGTGGATCTCAAGGTGA
TGGTGGTTAACTACTTTGGCAGCGTTGCCCTGACCAAAGCTCTACTTCCT
TCGATGGTGAAACGTGGTAGTGGTCACATATGCTTCATTAGCTCTGTTCA
GGGAAAGTTTGCCATTCCCCAAAGGGCTGCCTATTCCGCCTCGAAACATG
CCATGCAGGCTTTTGCCGATTCCCTGCGAGCCGAGGTGGCAAATAAGAAC
ATAAACGTGTCCTGCGTGAGTCCTGGCTACATACGCACCCAGCTGTCCTT
GAATGCATTGACAGGATCGGGGAGCAGTTACGGC

BS05408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-PA 981 CG7601-RA 1..768 17..784 3815 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-RA 1250 CG7601-RA 95..862 17..784 3825 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29735715..29735961 784..538 1220 99.6 Minus
3R 32079331 3R 29736016..29736233 539..322 1090 100 Minus
3R 32079331 3R 29736487..29736651 181..17 825 100 Minus
3R 32079331 3R 29736289..29736435 323..177 735 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:45:07 has no hits.

BS05408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:23 Download gff for BS05408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:33 Download gff for BS05408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:27 Download gff for BS05408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 95..862 17..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:10:24 Download gff for BS05408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 95..862 17..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:10:24 Download gff for BS05408.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29736490..29736645 23..178 100 <- Minus
3R 29735715..29735959 540..784 99 <- Minus
3R 29736016..29736232 323..539 100 <- Minus
3R 29736290..29736433 179..322 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:27 Download gff for BS05408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25561437..25561681 540..784 99 <- Minus
arm_3R 25561738..25561954 323..539 100 <- Minus
arm_3R 25562012..25562155 179..322 100 <- Minus
arm_3R 25562212..25562367 23..178 100 <- Minus

BS05408.complete Sequence

1013 bp (1013 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635102

> BS05408.complete
GAAGTTATCAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCA
GCAGCGACTGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCG
GTGGCACTTCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCA
GAAATTCCGCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCA
GTTCGGGCCTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGC
AGGGTTATTTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAA
GGACCTCCTCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTC
CCCTGGATCTGGCTGAACTGAACTCCATTCCAGAATTTGTCACCCGGGTG
CTGGCCGTGTACAACCAAGTGGACATACTCATCAACAACGGAGGGATCAG
TGTGCGAGCCGATGTGGCATCCACGGCAGTGGATGTGGATCTCAAGGTGA
TGGTGGTTAACTACTTTGGCAGCGTTGCCCTGACCAAAGCTCTACTTCCT
TCGATGGTGAAACGTGGTAGTGGTCACATATGCTTCATTAGCTCTGTTCA
GGGAAAGTTTGCCATTCCCCAAAGGGCTGCCTATTCCGCCTCGAAACATG
CCATGCAGGCTTTTGCCGATTCCCTGCGAGCCGAGGTGGCAAATAAGAAC
ATAAACGTGTCCTGCGTGAGTCCTGGCTACATACGCACCCAGCTGTCCTT
GAATGCATTGACAGGATCGGGAAGCAGTTACGGCAAAGTGGATGAAACCA
CGGCCAAGGGCATGTCACCGGATAAACTTGCAGAACGCATTCTGCAGTGC
ATTCTTCGCAAAGAACCGGACATTATTGTCAGCGATGTCCAGGCCAAGAT
CGCCTACTATCTTCGTCATCTTTGCCCGAGTCTCTACTTTTGGATCATGG
CCAAGCGCGCCGTCAAACTGGAGAATGCTGAGAAAAAGTCCACTTGAAAG
CTTTCTAGACCAT

BS05408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-RA 981 CG7601-PA 1..981 17..997 4905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-RA 1250 CG7601-RA 95..1075 17..997 4905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29735714..29735961 785..538 1240 100 Minus
3R 32079331 3R 29736016..29736233 539..322 1090 100 Minus
3R 32079331 3R 29735444..29735655 997..786 1060 100 Minus
3R 32079331 3R 29736487..29736651 181..17 825 100 Minus
3R 32079331 3R 29736289..29736435 323..177 735 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:59:34 has no hits.

BS05408.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:11 Download gff for BS05408.complete
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 1..981 17..997 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:10 Download gff for BS05408.complete
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 170..1157 17..1009 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:54 Download gff for BS05408.complete
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 95..1074 17..996 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:11 Download gff for BS05408.complete
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 170..1157 17..1009 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:54 Download gff for BS05408.complete
Subject Subject Range Query Range Percent Splice Strand
CG7601-RA 95..1074 17..996 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:54 Download gff for BS05408.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29735445..29735655 786..996 100 <- Minus
3R 29735714..29735959 540..785 100 <- Minus
3R 29736016..29736232 323..539 100 <- Minus
3R 29736290..29736433 179..322 100 <- Minus
3R 29736490..29736651 17..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:54 Download gff for BS05408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25562212..25562373 17..178 100   Minus
arm_3R 25561167..25561377 786..996 100 <- Minus
arm_3R 25561436..25561681 540..785 100 <- Minus
arm_3R 25561738..25561954 323..539 100 <- Minus
arm_3R 25562012..25562155 179..322 100 <- Minus

BS05408.pep Sequence

Translation from 16 to 996

> BS05408.pep
MKVQDMDKCAPSSDWNVLYWVLGTVLMPVALPLAIINIWQRFQAQKFRNQ
LPGKVVLITGASSGLGESLAHVFYRAGCRVILAARRTQELERVKKDLLAL
DVDPAYPPTVLPLDLAELNSIPEFVTRVLAVYNQVDILINNGGISVRADV
ASTAVDVDLKVMVVNYFGSVALTKALLPSMVKRGSGHICFISSVQGKFAI
PQRAAYSASKHAMQAFADSLRAEVANKNINVSCVSPGYIRTQLSLNALTG
SGSSYGKVDETTAKGMSPDKLAERILQCILRKEPDIIVSDVQAKIAYYLR
HLCPSLYFWIMAKRAVKLENAEKKST*

BS05408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7601-PA 326 CG7601-PA 1..326 1..326 1648 100 Plus
CG31937-PA 321 CG31937-PA 12..256 17..263 302 33.1 Plus
CG3699-PA 251 CG3699-PA 3..189 51..246 233 30.1 Plus
CG31549-PB 257 CG31549-PB 7..216 54..275 233 28.8 Plus
CG31549-PA 257 CG31549-PA 7..216 54..275 233 28.8 Plus