Clone Sequence Records
BS05408.3prime Sequence
777 bp (749 high quality bases) assembled on 2005-12-02
> BS05408.3prime
ATGGTCTAGAAAGCTTTCAAGTGGACTTTTTCTCAGCATTCTCCAGTTTG
ACGGCGCGCTTGGCCATGATCCAAAAGTAGAGACTCGGGCAAAGATGACG
AAGATAGTAGGCGATCTTGGCCTGGACATCGCTGACAATAATGTCCGGTT
CTTTGCGAAGAATGCACTGCAGAATGCGTTCTGCAAGTTTATCCGGTGAC
ATGCCCTTGGCCGTGGTTTCATCCACTTTGCCGTAACTGCTTCCCGATCC
TGTCAATGCATTCAAGGACAGCTGGGTGCGTATGTAGCCAGGACTCACGC
AGGACACGTTTATGTTCTTATTTGCCACCTCGGCTCGCAGGGAATCGGCA
AAAGCCTGCATGGCATGTTTCGAGGCGGAATAGGCAGCCCTTTGGGGAAT
GGCAAACTTTCCCTGAACAGAGCTAATGAAGCATATGTGACCACTACCAC
GTTTCACCATCGAAGGAAGTAGAGCTTTGGTCAGGGCAACGCTGCCAAAG
TAGTTAACCACCATCACCTTGAGATCCACATCCACTGCCGTGGATGCCAC
ATCGGCTCGCACACTGATCCCTCCGTTGTTGATGAGTATGTCCACTTGGT
TGTACACGGCCAGCACCCGGGTGACAAATTCTGGAATGGAGTTCAGTTCA
GCCAGATCCAGGGGAAGCACTGTCGGCGGATAAGCGGGATCCACATCCAA
TGCGAGGAGGTCCTTCTTAACCCGCTCCAATTCCTGAGTGCGACGTGCCG
CCAAAATAACCCTGCATCCAGCGCGGT
BS05408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-PA | 981 | CG7601-RA | 221..981 | 777..17 | 3805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 1250 | CG7601-RA | 315..1075 | 777..17 | 3805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29735714..29735961 | 229..476 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 29736016..29736233 | 475..692 | 1090 | 100 | Plus |
3R | 32079331 | 3R | 29735444..29735655 | 17..228 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 29736289..29736375 | 691..777 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:31:20 has no hits.
BS05408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:22 Download gff for
BS05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 221..981 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:32 Download gff for
BS05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 221..981 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:11 Download gff for
BS05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 315..1082 | 5..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:01 Download gff for
BS05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 315..1082 | 5..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:01 Download gff for
BS05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29736290..29736375 | 692..777 | 100 | | Plus |
3R | 29735437..29735655 | 5..228 | 97 | <- | Plus |
3R | 29735714..29735959 | 229..474 | 100 | <- | Plus |
3R | 29736016..29736232 | 475..691 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:11 Download gff for
BS05408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25561159..25561377 | 5..228 | 97 | <- | Plus |
arm_3R | 25561436..25561681 | 229..474 | 100 | <- | Plus |
arm_3R | 25561738..25561954 | 475..691 | 100 | <- | Plus |
arm_3R | 25562012..25562097 | 692..777 | 100 | | Plus |
BS05408.5prime Sequence
784 bp (722 high quality bases) assembled on 2005-12-02
> BS05408.5prime
GAAGTTATCAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCA
GCAGCGACTGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCG
GTGGCACTTCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCA
GAAATTCCGCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCA
GTTCGGGCCTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGC
AGGGTTATTTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAA
GGACCTCCTCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTC
CCCTGGATCTGGCTGAACTGAACTCCATTCCAGAATTTGTCACCCGGGTG
CTGGCCGTGTACAACCAAGTGGACATACTCATCAACAACGGAGGGATCAG
TGTGCGAGCCGATGTGGCATCCACGGCAGTGGATGTGGATCTCAAGGTGA
TGGTGGTTAACTACTTTGGCAGCGTTGCCCTGACCAAAGCTCTACTTCCT
TCGATGGTGAAACGTGGTAGTGGTCACATATGCTTCATTAGCTCTGTTCA
GGGAAAGTTTGCCATTCCCCAAAGGGCTGCCTATTCCGCCTCGAAACATG
CCATGCAGGCTTTTGCCGATTCCCTGCGAGCCGAGGTGGCAAATAAGAAC
ATAAACGTGTCCTGCGTGAGTCCTGGCTACATACGCACCCAGCTGTCCTT
GAATGCATTGACAGGATCGGGGAGCAGTTACGGC
BS05408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-PA | 981 | CG7601-RA | 1..768 | 17..784 | 3815 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 1250 | CG7601-RA | 95..862 | 17..784 | 3825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29735715..29735961 | 784..538 | 1220 | 99.6 | Minus |
3R | 32079331 | 3R | 29736016..29736233 | 539..322 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 29736487..29736651 | 181..17 | 825 | 100 | Minus |
3R | 32079331 | 3R | 29736289..29736435 | 323..177 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:45:07 has no hits.
BS05408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:23 Download gff for
BS05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:33 Download gff for
BS05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:27 Download gff for
BS05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..862 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:10:24 Download gff for
BS05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..862 | 17..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:10:24 Download gff for
BS05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29736490..29736645 | 23..178 | 100 | <- | Minus |
3R | 29735715..29735959 | 540..784 | 99 | <- | Minus |
3R | 29736016..29736232 | 323..539 | 100 | <- | Minus |
3R | 29736290..29736433 | 179..322 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:27 Download gff for
BS05408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25561437..25561681 | 540..784 | 99 | <- | Minus |
arm_3R | 25561738..25561954 | 323..539 | 100 | <- | Minus |
arm_3R | 25562012..25562155 | 179..322 | 100 | <- | Minus |
arm_3R | 25562212..25562367 | 23..178 | 100 | <- | Minus |
BS05408.complete Sequence
1013 bp (1013 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635102
> BS05408.complete
GAAGTTATCAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCA
GCAGCGACTGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCG
GTGGCACTTCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCA
GAAATTCCGCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCA
GTTCGGGCCTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGC
AGGGTTATTTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAA
GGACCTCCTCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTC
CCCTGGATCTGGCTGAACTGAACTCCATTCCAGAATTTGTCACCCGGGTG
CTGGCCGTGTACAACCAAGTGGACATACTCATCAACAACGGAGGGATCAG
TGTGCGAGCCGATGTGGCATCCACGGCAGTGGATGTGGATCTCAAGGTGA
TGGTGGTTAACTACTTTGGCAGCGTTGCCCTGACCAAAGCTCTACTTCCT
TCGATGGTGAAACGTGGTAGTGGTCACATATGCTTCATTAGCTCTGTTCA
GGGAAAGTTTGCCATTCCCCAAAGGGCTGCCTATTCCGCCTCGAAACATG
CCATGCAGGCTTTTGCCGATTCCCTGCGAGCCGAGGTGGCAAATAAGAAC
ATAAACGTGTCCTGCGTGAGTCCTGGCTACATACGCACCCAGCTGTCCTT
GAATGCATTGACAGGATCGGGAAGCAGTTACGGCAAAGTGGATGAAACCA
CGGCCAAGGGCATGTCACCGGATAAACTTGCAGAACGCATTCTGCAGTGC
ATTCTTCGCAAAGAACCGGACATTATTGTCAGCGATGTCCAGGCCAAGAT
CGCCTACTATCTTCGTCATCTTTGCCCGAGTCTCTACTTTTGGATCATGG
CCAAGCGCGCCGTCAAACTGGAGAATGCTGAGAAAAAGTCCACTTGAAAG
CTTTCTAGACCAT
BS05408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 981 | CG7601-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 1250 | CG7601-RA | 95..1075 | 17..997 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29735714..29735961 | 785..538 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 29736016..29736233 | 539..322 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 29735444..29735655 | 997..786 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 29736487..29736651 | 181..17 | 825 | 100 | Minus |
3R | 32079331 | 3R | 29736289..29736435 | 323..177 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:59:34 has no hits.
BS05408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:11 Download gff for
BS05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 1..981 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:10 Download gff for
BS05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 170..1157 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:54 Download gff for
BS05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..1074 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:11 Download gff for
BS05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 170..1157 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:54 Download gff for
BS05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..1074 | 17..996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:54 Download gff for
BS05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29735445..29735655 | 786..996 | 100 | <- | Minus |
3R | 29735714..29735959 | 540..785 | 100 | <- | Minus |
3R | 29736016..29736232 | 323..539 | 100 | <- | Minus |
3R | 29736290..29736433 | 179..322 | 100 | <- | Minus |
3R | 29736490..29736651 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:54 Download gff for
BS05408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25562212..25562373 | 17..178 | 100 | | Minus |
arm_3R | 25561167..25561377 | 786..996 | 100 | <- | Minus |
arm_3R | 25561436..25561681 | 540..785 | 100 | <- | Minus |
arm_3R | 25561738..25561954 | 323..539 | 100 | <- | Minus |
arm_3R | 25562012..25562155 | 179..322 | 100 | <- | Minus |
BS05408.pep Sequence
Translation from 16 to 996
> BS05408.pep
MKVQDMDKCAPSSDWNVLYWVLGTVLMPVALPLAIINIWQRFQAQKFRNQ
LPGKVVLITGASSGLGESLAHVFYRAGCRVILAARRTQELERVKKDLLAL
DVDPAYPPTVLPLDLAELNSIPEFVTRVLAVYNQVDILINNGGISVRADV
ASTAVDVDLKVMVVNYFGSVALTKALLPSMVKRGSGHICFISSVQGKFAI
PQRAAYSASKHAMQAFADSLRAEVANKNINVSCVSPGYIRTQLSLNALTG
SGSSYGKVDETTAKGMSPDKLAERILQCILRKEPDIIVSDVQAKIAYYLR
HLCPSLYFWIMAKRAVKLENAEKKST*
BS05408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-PA | 326 | CG7601-PA | 1..326 | 1..326 | 1648 | 100 | Plus |
CG31937-PA | 321 | CG31937-PA | 12..256 | 17..263 | 302 | 33.1 | Plus |
CG3699-PA | 251 | CG3699-PA | 3..189 | 51..246 | 233 | 30.1 | Plus |
CG31549-PB | 257 | CG31549-PB | 7..216 | 54..275 | 233 | 28.8 | Plus |
CG31549-PA | 257 | CG31549-PA | 7..216 | 54..275 | 233 | 28.8 | Plus |