Clone BS05409 Report

Search the DGRC for BS05409

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptPeb-RA
Protein status:BS05409.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05409.3prime Sequence

772 bp (690 high quality bases) assembled on 2005-12-02

> BS05409.3prime
ATGGTCTAGAAAGCTTCTATCCCAGAAATCCGAGGAAAGGATGCAAAAGT
TGTCCTAATATGCCTTTTACCGATGGCACTGTGCCGCCAACATCCAAGGT
GATAGACCCCTGCAATCCGCGACCTAAAGGACCAAATTTCCCACCAAAGA
TTGGAATAATTTGACTAGGTGAACTAAATCCGAATAAGTTTCCTAGTGAT
CCAAAGAAATTTCCGATTGGAGTAAAAATGCCAAAGGGGTCTAACGAAGG
TCCACTAAGAAATCCAGTTCCGAAAAGTCCATGTTGTCCGAAAATTCCCG
TACCGAACAGTCCACCGTTTCCAAAGATTCCGCCAGCAACATTTAGCACA
CTATTTGGAACTACCGAACCGTCTAAATGACCAGGAAGGATACCACCAGG
GAAAGGTCTTCCTGGACGGTTCGGCCGAGGACCACCTAGTATCCATGGAA
ATTGCCATGGTCCAAGTGGTCCGCCTGGTGAAGGTGGAGATCCACCAGGG
AAAGGTCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACCAGGGGATGG
CCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCAC
CAGGTGAAGGTTCACCAGGTGAAGGTTCACCAGGGGAAGGTCCACCAGGG
GAAGGTCCACCAGGGAAAAGTCCACCTGGACGTATCGGTGGAGAATTAAT
TGGTAGCCATGGTGGTCGATTAGGCCAATAAGGACCTAATGGATAACGAA
GGGGCCATCCAAGTGGATAAAT

BS05409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2668-PA 1134 Peb-RA 381..1134 770..17 3770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1529 CG2668-RB 404..1157 770..17 3770 100 Minus
Peb-RA 1202 CG2668-RA 404..1157 770..17 3770 100 Minus
Peb-RB 1529 CG2668-RB 555..683 664..536 480 91.5 Minus
Peb-RA 1202 CG2668-RA 555..683 664..536 480 91.5 Minus
Peb-RB 1529 CG2668-RB 570..682 664..552 460 93.8 Minus
Peb-RA 1202 CG2668-RA 570..682 664..552 460 93.8 Minus
Peb-RB 1529 CG2668-RB 573..683 676..566 420 91.9 Minus
Peb-RA 1202 CG2668-RA 573..683 676..566 420 91.9 Minus
Peb-RB 1529 CG2668-RB 588..683 676..581 345 90.6 Minus
Peb-RA 1202 CG2668-RA 588..683 676..581 345 90.6 Minus
Peb-RB 1529 CG2668-RB 603..683 676..596 270 88.9 Minus
Peb-RA 1202 CG2668-RA 603..683 676..596 270 88.9 Minus
Peb-RB 1529 CG2668-RB 629..692 665..602 230 90.6 Minus
Peb-RA 1202 CG2668-RA 629..692 665..602 230 90.6 Minus
Peb-RB 1529 CG2668-RB 633..692 676..617 210 90 Minus
Peb-RA 1202 CG2668-RA 633..692 676..617 210 90 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25175498..25176251 17..770 3770 100 Plus
2R 25286936 2R 25175972..25176100 536..664 480 91.5 Plus
2R 25286936 2R 25175973..25176085 552..664 460 93.8 Plus
2R 25286936 2R 25175972..25176082 566..676 420 91.9 Plus
2R 25286936 2R 25175972..25176067 581..676 345 90.6 Plus
2R 25286936 2R 25175972..25176052 596..676 270 88.9 Plus
2R 25286936 2R 25175963..25176026 602..665 230 90.6 Plus
2R 25286936 2R 25175963..25176022 617..676 210 90 Plus
Blast to na_te.dros performed on 2015-02-12 04:11:01 has no hits.

BS05409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:24 Download gff for BS05409.3prime
Subject Subject Range Query Range Percent Splice Strand
Peb-PA 379..1134 17..772 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:34 Download gff for BS05409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2668-PA 379..1134 17..772 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:01:09 Download gff for BS05409.3prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 402..1157 17..772 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:55 Download gff for BS05409.3prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 402..1157 17..772 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:55 Download gff for BS05409.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25175498..25176252 17..772 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:01:09 Download gff for BS05409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21063021..21063775 17..772 99   Plus

BS05409.5prime Sequence

758 bp (710 high quality bases) assembled on 2005-12-02

> BS05409.5prime
GAAGTTATCAGTCGACATGGTGCGACAATTGATACTCGTCCTTTCTCTGA
TTCTCTTCTGCGGCAGCTCACATGCTGTTGTCAGTGAATTGGCCCGTCAG
AGCGAGTCTGCCATCCAGGGTTTGGCAGACATAAAGATGGCGCCTCTACG
TTACTTAGATGTTCTCTTTGGTGGAAATCCCGGAGGACTTCGGGGTCTAG
ACGGTGGAAATTCAGCATCTTTATCAACCTTACAAGCAGCTAAAGTAGCA
AATATATTGGCAAGAGGTGATATCGCCAGTTCCGGATATAGTAAAATTTC
AGCTGGCGTTGGCAAGGGAAGCGACCTAATCACTATTATTAAGAACACTC
GATCCTACGATCCGTACCTTATTCCACCAGGTATTCCTGGCTATAATTAT
CCACTTGGATGGCCCCTTCGTTATCCATTAGGTCCTTATTGGCCTAATCG
ACCACCATGGCTACCAATTAATTCTCCACCGATACGTCCAGGTGGACTTT
TCCCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGAACCTTCACCT
GGTGAACCTTCACCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGG
ACCTTCCCCTGGTGGGCCATCCCCTGGTGGACCTTCCCCTGGTGGACCTT
CCCCTGGTGGACCTTTCCCTGGTGGATCTCCACCTTCACCAGGCGGACCA
CTTGGACCATGGCAATTTCCATGGATACTAGGTGGTCCTCGGCCGAACCG
TCCAGGAA

BS05409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2668-PA 1134 Peb-RA 1..742 17..758 3710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1529 CG2668-RB 24..765 17..758 3710 100 Plus
Peb-RA 1202 CG2668-RA 24..765 17..758 3710 100 Plus
Peb-RB 1529 CG2668-RB 555..683 503..631 480 91.5 Plus
Peb-RA 1202 CG2668-RA 555..683 503..631 480 91.5 Plus
Peb-RB 1529 CG2668-RB 570..682 503..615 460 93.8 Plus
Peb-RA 1202 CG2668-RA 570..682 503..615 460 93.8 Plus
Peb-RB 1529 CG2668-RB 573..683 491..601 420 91.9 Plus
Peb-RA 1202 CG2668-RA 573..683 491..601 420 91.9 Plus
Peb-RB 1529 CG2668-RB 588..683 491..586 345 90.6 Plus
Peb-RA 1202 CG2668-RA 588..683 491..586 345 90.6 Plus
Peb-RB 1529 CG2668-RB 603..683 491..571 270 88.9 Plus
Peb-RA 1202 CG2668-RA 603..683 491..571 270 88.9 Plus
Peb-RB 1529 CG2668-RB 629..692 502..565 230 90.6 Plus
Peb-RA 1202 CG2668-RA 629..692 502..565 230 90.6 Plus
Peb-RB 1529 CG2668-RB 633..692 491..550 210 90 Plus
Peb-RA 1202 CG2668-RA 633..692 491..550 210 90 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25175890..25176617 758..31 3640 100 Minus
2R 25286936 2R 25175972..25176100 631..503 480 91.5 Minus
2R 25286936 2R 25175973..25176085 615..503 460 93.8 Minus
2R 25286936 2R 25175972..25176082 601..491 420 91.9 Minus
2R 25286936 2R 25175972..25176067 586..491 345 90.6 Minus
2R 25286936 2R 25175972..25176052 571..491 270 88.9 Minus
2R 25286936 2R 25175963..25176026 565..502 230 90.6 Minus
2R 25286936 2R 25175963..25176022 550..491 210 90 Minus
Blast to na_te.dros performed on 2015-02-12 01:14:34 has no hits.

BS05409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:25 Download gff for BS05409.5prime
Subject Subject Range Query Range Percent Splice Strand
Peb-PA 1..740 17..756 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:36 Download gff for BS05409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2668-PA 1..740 17..756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:57:04 Download gff for BS05409.5prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..765 9..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:49 Download gff for BS05409.5prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..765 9..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:49 Download gff for BS05409.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25175890..25176616 32..758 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:57:04 Download gff for BS05409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21063413..21064139 32..758 100 <- Minus

BS05409.complete Sequence

1166 bp (1166 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635103

> BS05409.complete
GAAGTTATCAGTCGACATGGTGCGACAATTGATACTCGTCCTTTCTCTGA
TTCTCTTCTGCGGCAGCTCACATGCTGTTGTCAGTGAATTGGCCCGTCAG
AGCGAGTCTGCCATCCAGGGTTTGGCAGACATAAAGATGGCGCCTCTACG
TTACTTAGATGTTCTCTTTGGTGGAAATCCCGGAGGACTTCGGGGTCTAG
ACGGTGGAAATTCAGCATCTTTATCAACCTTACAAGCAGCTAAAGTAGCA
AATATATTGGCAAGAGGTGATATCGCCAGTTCCGGATATAGTAAAATTTC
AGCTGGCGTTGGCAAGGGAAGCGACCTAATCACTATTATTAAGAACACTC
GATCCTACGATCCGTACCTTATTCCACCAGGTATTCCTGGCTATAATTAT
CCACTTGGATGGCCCCTTCGTTATCCATTAGGTCCTTATTGGCCTAATCG
ACCACCATGGCTACCAATTAATTCTCCACCGATACGTCCAGGTGGACTTT
TCCCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGAACCTTCACCT
GGTGAACCTTCACCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGG
ACCTTCCCCTGGTGGGCCATCCCCTGGTGGACCTTCCCCTGGTGGACCTT
CCCCTGGTGGACCTTTCCCTGGTGGATCTCCACCTTCACCAGGCGGACCA
CTTGGACCATGGCAATTTCCATGGATACTAGGTGGTCCTCGGCCGAACCG
TCCAGGAAGACCTTTCCCTGGTGGTATCCTTCCTGGTCATTTAGACGGTT
CGGTAGTTCCAAATAGTGTGCTAAATGTTGCTGGCGGAATCTTTGGAAAC
GGTGGACTGTTCGGTACGGGAATTTTCGGACAACATGGACTTTTCGGAAC
TGGATTTCTTAGTGGACCTTCGTTAGACCCCTTTGGCATTTTTACTCCAA
TCGGAAATTTCTTTGGATCACTAGGAAACTTATTCGGATTTAGTTCACCT
AGTCAAATTATTCCAATCTTTGGTGGGAAATTTGGTCCTTTAGGTCGCGG
ATTGCAGGGGTCTATCACCTTGGATGTTGGCGGCACAGTGCCATCGGTAA
AAGGCATATTAGGACAACTTTTGCATCCTTTCCTCGGATTTCTGGGATAG
AAGCTTTCTAGACCAT

BS05409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1134 CG2668-PB 1..1134 17..1150 5670 100 Plus
Peb-RA 1134 CG2668-PA 1..1134 17..1150 5670 100 Plus
Peb-RB 1134 CG2668-PB 532..660 503..631 480 91.5 Plus
Peb-RA 1134 CG2668-PA 532..660 503..631 480 91.5 Plus
Peb-RB 1134 CG2668-PB 547..659 503..615 460 93.8 Plus
Peb-RA 1134 CG2668-PA 547..659 503..615 460 93.8 Plus
Peb-RB 1134 CG2668-PB 550..660 491..601 420 91.9 Plus
Peb-RA 1134 CG2668-PA 550..660 491..601 420 91.9 Plus
Peb-RB 1134 CG2668-PB 565..660 491..586 345 90.6 Plus
Peb-RA 1134 CG2668-PA 565..660 491..586 345 90.6 Plus
Peb-RB 1134 CG2668-PB 580..660 491..571 270 88.9 Plus
Peb-RA 1134 CG2668-PA 580..660 491..571 270 88.9 Plus
Peb-RB 1134 CG2668-PB 606..669 502..565 230 90.6 Plus
Peb-RA 1134 CG2668-PA 606..669 502..565 230 90.6 Plus
Peb-RB 1134 CG2668-PB 610..669 491..550 210 90 Plus
Peb-RA 1134 CG2668-PA 610..669 491..550 210 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1529 CG2668-RB 24..1157 17..1150 5670 100 Plus
Peb-RA 1202 CG2668-RA 24..1157 17..1150 5670 100 Plus
Peb-RB 1529 CG2668-RB 555..683 503..631 480 91.5 Plus
Peb-RA 1202 CG2668-RA 555..683 503..631 480 91.5 Plus
Peb-RB 1529 CG2668-RB 570..682 503..615 460 93.8 Plus
Peb-RA 1202 CG2668-RA 570..682 503..615 460 93.8 Plus
Peb-RB 1529 CG2668-RB 573..683 491..601 420 91.9 Plus
Peb-RA 1202 CG2668-RA 573..683 491..601 420 91.9 Plus
Peb-RB 1529 CG2668-RB 588..683 491..586 345 90.6 Plus
Peb-RA 1202 CG2668-RA 588..683 491..586 345 90.6 Plus
Peb-RB 1529 CG2668-RB 603..683 491..571 270 88.9 Plus
Peb-RA 1202 CG2668-RA 603..683 491..571 270 88.9 Plus
Peb-RB 1529 CG2668-RB 629..692 502..565 230 90.6 Plus
Peb-RA 1202 CG2668-RA 629..692 502..565 230 90.6 Plus
Peb-RB 1529 CG2668-RB 633..692 491..550 210 90 Plus
Peb-RA 1202 CG2668-RA 633..692 491..550 210 90 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25175498..25176617 1150..31 5600 100 Minus
2R 25286936 2R 25175972..25176100 631..503 480 91.5 Minus
2R 25286936 2R 25175973..25176085 615..503 460 93.8 Minus
2R 25286936 2R 25175972..25176082 601..491 420 91.9 Minus
2R 25286936 2R 25175972..25176067 586..491 345 90.6 Minus
2R 25286936 2R 25175972..25176052 571..491 270 88.9 Minus
2R 25286936 2R 25175963..25176026 565..502 230 90.6 Minus
2R 25286936 2R 25175963..25176022 550..491 210 90 Minus
Blast to na_te.dros performed on 2014-11-27 07:33:29 has no hits.

BS05409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:42 Download gff for BS05409.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 1..1134 17..1150 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:45 Download gff for BS05409.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..1157 9..1150 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:12 Download gff for BS05409.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 24..1157 17..1150 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:43 Download gff for BS05409.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..1157 9..1150 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:42 Download gff for BS05409.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 24..1157 17..1150 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:42 Download gff for BS05409.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25175498..25176616 32..1150 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:12 Download gff for BS05409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21063021..21064139 32..1150 100 <- Minus

BS05409.pep Sequence

Translation from 16 to 1149

> BS05409.pep
MVRQLILVLSLILFCGSSHAVVSELARQSESAIQGLADIKMAPLRYLDVL
FGGNPGGLRGLDGGNSASLSTLQAAKVANILARGDIASSGYSKISAGVGK
GSDLITIIKNTRSYDPYLIPPGIPGYNYPLGWPLRYPLGPYWPNRPPWLP
INSPPIRPGGLFPGGPSPGGPSPGEPSPGEPSPGGPSPGGPSPGGPSPGG
PSPGGPSPGGPSPGGPFPGGSPPSPGGPLGPWQFPWILGGPRPNRPGRPF
PGGILPGHLDGSVVPNSVLNVAGGIFGNGGLFGTGIFGQHGLFGTGFLSG
PSLDPFGIFTPIGNFFGSLGNLFGFSSPSQIIPIFGGKFGPLGRGLQGSI
TLDVGGTVPSVKGILGQLLHPFLGFLG*

BS05409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-PB 377 CG2668-PB 1..377 1..377 2062 100 Plus
Peb-PA 377 CG2668-PA 1..377 1..377 2062 100 Plus
CG10625-PD 268 CG10625-PD 115..258 119..266 221 42.7 Plus
CG10625-PA 268 CG10625-PA 115..258 119..266 221 42.7 Plus
CG10625-PE 652 CG10625-PE 499..642 119..266 221 42.7 Plus
CG10625-PD 268 CG10625-PD 84..204 139..251 194 42.6 Plus
CG10625-PA 268 CG10625-PA 84..204 139..251 194 42.6 Plus
CG10625-PD 268 CG10625-PD 164..265 120..227 172 42.2 Plus
CG10625-PA 268 CG10625-PA 164..265 120..227 172 42.2 Plus