Clone Sequence Records
BS05410.3prime Sequence
938 bp (837 high quality bases) assembled on 2005-12-02
> BS05410.3prime
ATGGTCTAGAAAGCTTCTAATCCTCTTCCTCCTCCTCATCCTCCTCGTTC
GCACGACCCGCCCCCGATCCCTTGTGGTTGAACTCCTTCTCTGGATCGAA
CTGCATGCCCTCCTGGTCGGCGCCATCCTCCTCGTCATCGTCGCCAGCCA
CCTGGGCGTTCTCGGCCTCAGCGCGCTCCAGGCGTCTGGCCAGATCCGCC
TCGTCGATGGCCGTAACCAGTTTGGGTGCCATGATCACCTTGAACTCTCC
ATCGTACTCGCTGGTCTTGGCGCGAATGTGCTCAATGGCCACCTCCAGAG
CCTTTAAACCGTCTGTCTTCTTGGTAGTGGATGTGGTCATTACATAGAGT
GGCGGTGCTATCAGGTTGATGCGAATGGGCAGCTCCTCGGTGCTCAGCTC
CAGGCCCTTGGTGAGCGATGCCTTGACAGCGTCGATGCCCTCGTAACCGT
AGCAGGAGCACTCGATGTCCGCACGGATCTTGACAGTGGGCGAGACCAGC
TTCCGCTTGATGTTGCTCAACAGGACCTCCTTGGTCTCCGGTTCCAGGTT
GCACTCATCGAAGACGGTGGGATCGGTGACCGATTGCTTGAAGATGTCGT
AGGCGACCGTCTTGTTGTTGTACTTCTTCTCGAAGTGCCAGGCGGTCTTC
TGGTAGAGATCTTCCAGCTTCTCGTTGCCCTCGAAGCCGAGTATGTCGGC
GACATGGCGGAGCAGTGAGTTGATGGCCTTGGCCTTAGCGAAGCGCTCGG
TGCACTTCTCGACATCTTCGGGCGAAACGCGACGCTTCGACAGATCGATG
TAGCCCTTCTCCTTGTCAACACGGATAACCACCACCGGTTCGGTCTTGCC
GACACGAATCAGCTTGTTGATGGAGCGGATGCGCCGGCGGGACAGCTCCG
ACAGCAGGATCATGCCCTCGATGTTGTTGTACTCAAGC
BS05410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9946-PA | 1026 | eIF-2alpha-RA | 105..1026 | 938..17 | 4610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2alpha-RB | 1519 | CG9946-RB | 219..1140 | 938..17 | 4610 | 100 | Minus |
| eIF-2alpha-RA | 1200 | CG9946-RA | 219..1140 | 938..17 | 4610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16446178..16446775 | 341..938 | 2960 | 99.7 | Plus |
| X | 23542271 | X | 16445555..16445885 | 17..347 | 1655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:04:59 has no hits.
BS05410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:26 Download gff for
BS05410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9946-PA | 105..1026 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:37 Download gff for
BS05410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9946-PA | 105..1026 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:49:20 Download gff for
BS05410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 219..1140 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:56:35 Download gff for
BS05410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 219..1140 | 17..938 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:56:35 Download gff for
BS05410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16445555..16445885 | 17..347 | 100 | <- | Plus |
| X | 16446185..16446775 | 348..938 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:49:20 Download gff for
BS05410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16339588..16339918 | 17..347 | 100 | <- | Plus |
| arm_X | 16340218..16340808 | 348..938 | 100 | | Plus |
BS05410.5prime Sequence
907 bp (815 high quality bases) assembled on 2005-12-02
> BS05410.5prime
GAAGTTATCAGTCGACATGGCCCTGACGTCGCGCTTCTACAACGAGCGGT
ATCCGGAGATCGAGGATGTCGTTATGGTGAACGTGCTGTCCATCGCCGAG
ATGGGCGCCTACGTTCATCTGCTTGAGTACAACAACATCGAGGGCATGAT
CCTGCTGTCGGAGCTGTCCCGCCGGCGCATCCGCTCCATCAACAAGCTGA
TTCGTGTCGGCAAGACCGAACCGGTGGTGGTTATCCGTGTTGACAAGGAG
AAGGGCTACATCGATCTGTCGAAGCGTCGCGTTTCGCCCGAAGATGTCGA
GAAGTGCACCGAGCGCTTCGCTAAGGCCAAGGCCATCAACTCACTGCTCC
GCCATGTCGCCGACATACTCGGCTTCGAGGGCAACGAGAAGCTGGAAGAT
CTCTACCAGAAGACCGCCTGGCACTTCGAGAAGAAGTACAACAACAAGAC
GGTCGCCTACGACATCTTCAAGCAATCGGTCACCGATCCCACCGTCTTCG
ATGAGTGCAACCTGGAACCGGAGACCAAGGAGGTCCTGTTGAGCAACATC
AAGCGGAAGCTGGTCTCGCCCACTGTCAAGATCCGTGCGGACATCGAGTG
CTCCTGCTACGGTTACGAGGGCATCGACGCTGTCAAGGCATCGCTCACCA
AGGGCCTGGAGCTGAGCACCGAGGAGCTGCCCATTCGCATCAACCTGATA
GCACCGCCACTCTATGTAATGACCACATCCACTACCAAGAAGACAGACGG
TTTAAAGGCTCTGGAGGTGGCCATTGAGCACATTCGCGCCAAGACCAGCG
AGTACGATGGAGAGTTCAGGGTGATCATGGCACCCAAACTGGGTACGGCC
ATCGACGAGGCGGATCTGGCCAGACGCCTGGAGCGCGCTGAGGCCGAGAA
CGCCCAG
BS05410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9946-PA | 1026 | eIF-2alpha-RA | 1..891 | 17..907 | 4405 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2alpha-RB | 1519 | CG9946-RB | 113..1005 | 15..907 | 4435 | 99.8 | Plus |
| eIF-2alpha-RA | 1200 | CG9946-RA | 113..1005 | 15..907 | 4435 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16446178..16446881 | 718..15 | 3490 | 99.7 | Minus |
| X | 23542271 | X | 16445690..16445885 | 907..712 | 950 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:59:28 has no hits.
BS05410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:27 Download gff for
BS05410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9946-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:38 Download gff for
BS05410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9946-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:29 Download gff for
BS05410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 113..1005 | 15..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:55 Download gff for
BS05410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 113..1005 | 15..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:55 Download gff for
BS05410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16445690..16445885 | 712..907 | 98 | <- | Minus |
| X | 16446185..16446881 | 15..711 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:29 Download gff for
BS05410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16339723..16339918 | 712..907 | 98 | <- | Minus |
| arm_X | 16340218..16340914 | 15..711 | 100 | | Minus |
BS05410.complete Sequence
1058 bp (1058 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635104
> BS05410.complete
GAAGTTATCAGTCGACATGGCCCTGACGTCGCGCTTCTACAACGAGCGGT
ATCCGGAGATCGAGGATGTCGTTATGGTGAACGTGCTGTCCATCGCCGAG
ATGGGCGCCTACGTTCATCTGCTTGAGTACAACAACATCGAGGGCATGAT
CCTGCTGTCGGAGCTGTCCCGCCGGCGCATCCGCTCCATCAACAAGCTGA
TTCGTGTCGGCAAGACCGAACCGGTGGTGGTTATCCGTGTTGACAAGGAG
AAGGGCTACATCGATCTGTCGAAGCGTCGCGTTTCGCCCGAAGATGTCGA
GAAGTGCACCGAGCGCTTCGCTAAGGCCAAGGCCATCAACTCACTGCTCC
GCCATGTCGCCGACATACTCGGCTTCGAGGGCAACGAGAAGCTGGAAGAT
CTCTACCAGAAGACCGCCTGGCACTTCGAGAAGAAGTACAACAACAAGAC
GGTCGCCTACGACATCTTCAAGCAATCGGTCACCGATCCCACCGTCTTCG
ATGAGTGCAACCTGGAACCGGAGACCAAGGAGGTCCTGTTGAGCAACATC
AAGCGGAAGCTGGTCTCGCCCACTGTCAAGATCCGTGCGGACATCGAGTG
CTCCTGCTACGGTTACGAGGGCATCGACGCTGTCAAGGCATCGCTCACCA
AGGGCCTGGAGCTGAGCACCGAGGAGCTGCCCATTCGCATCAACCTGATA
GCACCGCCACTCTATGTAATGACCACATCCACTACCAAGAAGACAGACGG
TTTAAAGGCTCTGGAGGTGGCCATTGAGCACATTCGCGCCAAGACCAGCG
AGTACGATGGAGAGTTCAAGGTGATCATGGCACCCAAACTGGTTACGGCC
ATCGACGAGGCGGATCTGGCCAGACGCCTGGAGCGCGCTGAGGCCGAGAA
CGCCCAGGTGGCTGGCGACGATGACGAGGAGGATGGCGCCGACCAGGAGG
GCATGCAGTTCGATCCAGAGAAGGAGTTCAACCACAAGGGATCGGGGGCG
GGTCGTGCGAACGAGGAGGATGAGGAGGAGGAAGAGGATTAGAAGCTTTC
TAGACCAT
BS05410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2alpha-RB | 1026 | CG9946-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
| eIF-2alpha-RA | 1026 | CG9946-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2alpha-RB | 1519 | CG9946-RB | 113..1140 | 15..1042 | 5140 | 100 | Plus |
| eIF-2alpha-RA | 1200 | CG9946-RA | 113..1140 | 15..1042 | 5140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16446178..16446881 | 718..15 | 3490 | 99.7 | Minus |
| X | 23542271 | X | 16445555..16445885 | 1042..712 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:35:56 has no hits.
BS05410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:29 Download gff for
BS05410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:30 Download gff for
BS05410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 94..1121 | 15..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:10 Download gff for
BS05410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 115..1140 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:30 Download gff for
BS05410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 94..1121 | 15..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:21 Download gff for
BS05410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2alpha-RA | 115..1140 | 17..1042 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:21 Download gff for
BS05410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16445555..16445885 | 712..1042 | 100 | <- | Minus |
| X | 16446185..16446879 | 17..711 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:10 Download gff for
BS05410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16339588..16339918 | 712..1042 | 100 | <- | Minus |
| arm_X | 16340218..16340912 | 17..711 | 100 | | Minus |
BS05410.pep Sequence
Translation from 16 to 1041
> BS05410.pep
MALTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSEL
SRRRIRSINKLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTER
FAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDI
FKQSVTDPTVFDECNLEPETKEVLLSNIKRKLVSPTVKIRADIECSCYGY
EGIDAVKASLTKGLELSTEELPIRINLIAPPLYVMTTSTTKKTDGLKALE
VAIEHIRAKTSEYDGEFKVIMAPKLVTAIDEADLARRLERAEAENAQVAG
DDDEEDGADQEGMQFDPEKEFNHKGSGAGRANEEDEEEEED*
BS05410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2alpha-PB | 341 | CG9946-PB | 1..341 | 1..341 | 1731 | 100 | Plus |
| eIF-2alpha-PA | 341 | CG9946-PA | 1..341 | 1..341 | 1731 | 100 | Plus |
