Clone BS05413 Report

Search the DGRC for BS05413

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptmino-RA
Protein status:BS05413.pep: full length peptide match
Sequenced Size:2585

Clone Sequence Records

BS05413.complete Sequence

2585 bp assembled on 2009-12-07

GenBank Submission: KX797614

> BS05413.complete
GAAGTTATCAGTCGACATGTTGACGACCGTCCTGAACTTTGCCCAGCGCG
TCGCCGAGATTTCTTTGCTCGGCGGCATCGAGATTGCATCAGTTGCCCTT
ATTGTCTACTATATATTCGCCAAGACGAGGGCACCGGTAATCATCGCTAG
CCTGTTTCCCAATCTGAATCTGAGCTACCGGACGAGCTACCTCAGCAAGA
TCAACACCATACGCAGCGATCTTCTGGTCACTTTGCGATCATCCAATGAG
CCCAAGACGCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTT
GGAGCTGACCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACT
GGGGCGTGCTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTC
GAGTACCGACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCA
TGCAATTAAACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTA
AAAATGGTCATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCG
CAGGAGGAGGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCG
TAAGCAGGAGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTC
TGAACAATGGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTG
CCCTGCTTCCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCT
CAAAACAGCCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGC
TGCATCGCAGCCACTTGGACTACATCATGGTCACATGGATACTCACGAAC
AACGATATACGCAGTCCTCTGGTAGCCGCTGGCAACAACCTGCAAATTCC
GGTCTTTGGTGGGCTCCTACGTGGTTTGGGTGCTTTCTTCATCAAACGCA
AGATTGATCCTGTGGAGGGCAAGAAGGACGTGCTTTATCGCGCTGCTCTA
CACCTGTATCTGACCCACGCCTTGAAGCAGGGCCACAACGTCGAGTTCTT
CATCGAGGGCGGACGAACGCGCACTGGCAAGCCGTGCATGCCCAAGGGCG
GCATTCTTTCTGTGATTGTGAACGCCTTCATGGACGGCAGCATACCGGAC
GCACTGCTGGTACCCGTTTCCGTAAACTACGAGCGTCTCGTCGACGGAAA
CTTTGTGCGCGAACAAAAGGGCGAGAAGAAGATACCCGAATCATTCGGCA
AGGCCATTTCGGGCATTTGGAAGGCCCTGAAATCAAACTACGGCCTCATG
CGCATCGACTTTAACGAGCCCTACTCCATACGTGAGCTGGTCAATTCGTA
CAACAAGATAGCCCGAGAAGATGGAAACATTGCCAAGGTCTACAAGCCAT
CTGCCAGGGTCCTACAGCACAATCAGTCCACCTCCTCCTTGTACGGCACC
GATGTTGTGTGCGAGGAGCACCGCAATCTCATCGAAAGCATCTCGCGCCA
GGTGGTCTTTGACTGCGCAGCAGCCACCTCTGTGATGTCCACCAATGCGT
TAGCCTTTTTGCTGCTCACCCGCTTTAGGAACGGTGCCGAGGAGCAGATT
CTGTCGGAGGCTCTGGACGACTTGCGAAACTCGTTGTCGGGCTGCAAGGA
CATTGGTTTTTCCGGGGAATCCTCGCAAATTGTGGCATATGCCTGTGACC
TACTCGGCTCAGGTCTTGTGACTCGCTCTCGGGATGAGAACGGGCGTTTG
GTGATTAAGGCTGTGAATTCAGTGGAAAGCTTTATTGAGCTGGCTTACTA
TTCGAACATGCTGACGCCGCACTTTGCCCTCAGCTCGATATTGTTGACCA
CCTTCCACTCACTGCTTCCGGAAACGGAGAATAAGAAAGAAGCCGCCGTG
TCGCGCAAAAAGCTGATAGACACCGCGCTGGAAAACTGCCAGATCTATCG
CTACGAATTTATTCTGAACAAACCGACGCAGGTGCTGGAAAATTTGCTGT
ACCAGCAGTTGGACGACCTCTTGATTAGTGGTTGCGTTTTGACCGAAAAG
CTCCATGACGATTTGCCGAATGGCGCTGAGGGCAGGCGCTTGGCCAACGT
CCTGGCAGAGTGCCTGGACGAGGACGGCTACGAAGACGTGCGCGATGGCG
AGGCGGATGAGCCCAAACTGCTGTTCGCCAGCGAAACCCCGTCGCAGCAG
CGCTACATTTGCGAGGTGCTGGCGCCCTTCGCCTGGACGTATGTGACGGT
GGCGCAGTCCCTGCAAATACTGCACAAGAACTCCATGCTGGAGTCTGAAT
TTATAAGCTTTGTGATTAACGATCTGAGCAGCAAGGTCAAGCGCGGCAGC
TGCATCTATGCCGAAAGCATATCCACCGACTCCGTGCGCAACTGCCTGAA
GCTGTTGGAGAAATGGTCTGTGATCGAGGTTTGCAACCAGCAGGGCATGC
GCCTGATCTCACTCAACACGCTCTACGAGATGTCTCGTGAGTCGCTCAAC
TCGATCGTGAAGAAGATCGACGCAATTGTACCAAAATTCAACTCGGGCTA
CTTCAGTGTAACGCCTTAAAAGCTTTCTAGACCAT

BS05413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 2553 CG5508-PE 1..2553 17..2569 12765 100 Plus
mino-RA 2553 CG5508-PA 1..2553 17..2569 12765 100 Plus
mino-RC 2361 CG5508-PC 40..2361 248..2569 11610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 3176 CG5508-RE 216..2769 16..2569 12770 100 Plus
mino-RA 3546 CG5508-RA 690..3243 16..2569 12770 100 Plus
mino-RB 2687 CG5508-RB 168..2489 248..2569 11610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27930202..27931199 411..1408 4990 100 Plus
3R 32079331 3R 27931686..27932025 1711..2050 1700 100 Plus
3R 32079331 3R 27932088..27932399 2049..2360 1560 100 Plus
3R 32079331 3R 27931317..27931626 1405..1714 1550 100 Plus
3R 32079331 3R 27932461..27932670 2360..2569 1050 100 Plus
3R 32079331 3R 27929981..27930147 248..414 835 100 Plus
3R 32079331 3R 27929229..27929349 128..248 605 100 Plus
3R 32079331 3R 27925880..27925994 16..130 575 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:10:29 has no hits.

BS05413.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:29 Download gff for BS05413.complete
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 694..3239 22..2567 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:46 Download gff for BS05413.complete
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 696..3241 22..2567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:32 Download gff for BS05413.complete
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 694..3239 22..2567 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:34 Download gff for BS05413.complete
Subject Subject Range Query Range Percent Splice Strand
mino-RA 696..3241 22..2567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:34 Download gff for BS05413.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27932090..27932399 2051..2360 100 -> Plus
3R 27932462..27932668 2361..2567 100   Plus
3R 27931688..27932025 1713..2050 100 -> Plus
3R 27925886..27925993 22..129 100 -> Plus
3R 27929231..27929348 130..247 100 -> Plus
3R 27929981..27930145 248..412 100 -> Plus
3R 27930204..27931198 413..1407 100 -> Plus
3R 27931320..27931624 1408..1712 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:46 Download gff for BS05413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23758184..23758390 2361..2567 100   Plus
arm_3R 23751608..23751715 22..129 100 -> Plus
arm_3R 23754953..23755070 130..247 100 -> Plus
arm_3R 23755703..23755867 248..412 100 -> Plus
arm_3R 23755926..23756920 413..1407 100 -> Plus
arm_3R 23757042..23757346 1408..1712 100 -> Plus
arm_3R 23757410..23757747 1713..2050 100 -> Plus
arm_3R 23757812..23758121 2051..2360 100 -> Plus

BS05413.3prime Sequence

731 bp (730 high quality bases) assembled on 2005-12-02

> BS05413.3prime
ATGGTCTAGAAAGCTTTTAAGGCGTTACACTGAAGTAGCCCGAGTTGAAT
TTTGGTACAATTGCGTCGATCTTCTTCACGATCGAGTTGAGCGACTCACG
AGACATCTCGTAGAGCGTGTTGAGTGAGATCAGGCGCATGCCCTGCTGGT
TGCAAACCTCGATCACAGACCATTTCTCCAACAGCTTCAGGCAGTTGCGC
ACGGAGTCGGTGGATATGCTTTCGGCATAGATGCAGCTGCCGCGCTTGAC
CTTGCTGCTCAGATCGTTAATCACAAAGCTTATAAATTCAGACTCCAGCA
TGGAGTTCTTGTGCAGTATTTGCAGGGACTGCGCCACCGTCACATACGTC
CAGGCGAAGGGCGCCAGCACCTCGCAAATGTAGCGCTGCTGCGACGGGGT
TTCGCTGGCGAACAGCAGTTTGGGCTCATCCGCCTCGCCATCGCGCACGT
CTTCGTAGCCGTCCTCGTCCAGGCACTCTGCCAGGACGTTGGCCAAGCGC
CTGCCCTCAGCGCCATTCGGCAAATCGTCATGGAGCTTTTCGGTCAAAAC
GCAACCACTAATCAAGAGGTCGTCCAACTGCTGGTACAGCAAATTTTCCA
GCACCTGCGTCGGTTTGTTCAGAATAAATTCGTAGCGATAGATCTGGCAG
TTTTCCAGCGCGGTGTCTATCAGCTTTTTGCGCGACACGGCGGCTTCTTT
CTTATTCTCCGTTTCCGGAAGCAGTGAGTGG

BS05413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5508-PA 2553 CG5508-RA 1839..2553 731..17 3575 100 Minus
CG5508-PC 2361 CG5508-RC 1647..2361 731..17 3575 100 Minus
CG5508-PB 2274 CG5508-RB 1560..2274 731..17 3575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 3176 CG5508-RE 2055..2769 731..17 3575 100 Minus
mino-RB 2687 CG5508-RB 1775..2489 731..17 3575 100 Minus
mino-RC 2903 CG5508-RC 1886..2600 731..17 3575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27932088..27932399 537..226 1560 100 Minus
3R 32079331 3R 27932461..27932670 226..17 1050 100 Minus
3R 32079331 3R 27931830..27932025 731..536 980 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:52:34 has no hits.

BS05413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:32 Download gff for BS05413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-PA 1839..2553 17..731 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:45 Download gff for BS05413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-PB 1560..2274 17..731 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:29:56 Download gff for BS05413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-RC 1886..2600 17..731 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:21 Download gff for BS05413.3prime
Subject Subject Range Query Range Percent Splice Strand
mino-RC 1886..2600 17..731 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:21 Download gff for BS05413.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27931830..27932025 536..731 100 -> Minus
3R 27932090..27932399 226..535 100 -> Minus
3R 27932462..27932670 17..225 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:29:56 Download gff for BS05413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23757552..23757747 536..731 100 -> Minus
arm_3R 23757812..23758121 226..535 100 -> Minus
arm_3R 23758184..23758392 17..225 100   Minus

BS05413.5prime Sequence

920 bp (749 high quality bases) assembled on 2005-12-02

> BS05413.5prime
GAAGTTATCAGTCGACATGTTGACGACCGTCCTGAACTTTGCCCAGCGCG
TCGCCGAGATTTCTTTGCTCGGCGGCATCGAGATTGCATCAGTTGCCCTT
ATTGTCTACTATATATTCGCCAAGACGAGGGCACCGGTAATCATCGCTAG
CCTGTTTCCCAATCTGAATCTGAGCTACCGGACGAGCTACCTCAGCAAGA
TCAACACCATACGCAGCGATCTTCTGGTCACTTTGCGATCATCCAATGAG
CCCAAGACGCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTT
GGAGCTGACCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACT
GGGGCGTGCTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTC
GAGTACCGACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCA
TGCAATTAAACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTA
AAAATGGTCATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCG
CAGGAGGAGGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCG
TAAGCAGGAGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTC
TGAACAATGGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTG
CCCTGCTTCCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCT
CAAAACAGCCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGC
TGCATCGCAGCCACTTGGACTACATCATGGTCACATGGATACTCACGAAC
AACGATATACGCAGTCCTCTGGTAGCCGCTGGCAACAACCTGCAAATCCC
GGTCTTTGGTGGGCTCCTAC

BS05413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5508-PA 2553 CG5508-RA 1..904 17..920 4495 99.8 Plus
CG5508-PC 2361 CG5508-RC 40..712 248..920 3340 99.8 Plus
CG5508-PB 2274 CG5508-RB 1..625 296..920 3100 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 3176 CG5508-RE 216..1120 16..920 4510 99.9 Plus
mino-RA 3546 CG5508-RA 690..1594 16..920 4510 99.9 Plus
mino-RB 2687 CG5508-RB 168..840 248..920 3350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27930202..27930711 411..920 2535 99.8 Plus
3R 32079331 3R 27929981..27930147 248..414 835 100 Plus
3R 32079331 3R 27929229..27929349 128..248 605 100 Plus
3R 32079331 3R 27925880..27925994 16..130 575 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:36:31 has no hits.

BS05413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:33 Download gff for BS05413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:47 Download gff for BS05413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:22 Download gff for BS05413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 682..1594 7..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:56 Download gff for BS05413.5prime
Subject Subject Range Query Range Percent Splice Strand
mino-RA 682..1594 7..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:56 Download gff for BS05413.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27925872..27925993 7..129 97 -> Plus
3R 27929231..27929348 130..247 100 -> Plus
3R 27929981..27930145 248..412 100 -> Plus
3R 27930204..27930711 413..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:22 Download gff for BS05413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23751594..23751715 7..129 97 -> Plus
arm_3R 23754953..23755070 130..247 100 -> Plus
arm_3R 23755703..23755867 248..412 100 -> Plus
arm_3R 23755926..23756433 413..920 99   Plus

BS05413.pep Sequence

Translation from 16 to 2568

> BS05413.pep
MLTTVLNFAQRVAEISLLGGIEIASVALIVYYIFAKTRAPVIIASLFPNL
NLSYRTSYLSKINTIRSDLLVTLRSSNEPKTQNSVAHGIGTQNMLELTPH
SGQKPFKKLFDWGVLFPYVAQVVRSEKFEYRQVTEIVHNDAVLKHAIKQA
AEQTLREQRYAKNGHRLLTRSASGDQEAQEEEDEKRGISYQAILRKQEQR
AISILKDMGSTLNNGLLAFTSWILYKLLPCFLSGVVTNTKQIEMLKTATE
RSPGTPLIFVPLHRSHLDYIMVTWILTNNDIRSPLVAAGNNLQIPVFGGL
LRGLGAFFIKRKIDPVEGKKDVLYRAALHLYLTHALKQGHNVEFFIEGGR
TRTGKPCMPKGGILSVIVNAFMDGSIPDALLVPVSVNYERLVDGNFVREQ
KGEKKIPESFGKAISGIWKALKSNYGLMRIDFNEPYSIRELVNSYNKIAR
EDGNIAKVYKPSARVLQHNQSTSSLYGTDVVCEEHRNLIESISRQVVFDC
AAATSVMSTNALAFLLLTRFRNGAEEQILSEALDDLRNSLSGCKDIGFSG
ESSQIVAYACDLLGSGLVTRSRDENGRLVIKAVNSVESFIELAYYSNMLT
PHFALSSILLTTFHSLLPETENKKEAAVSRKKLIDTALENCQIYRYEFIL
NKPTQVLENLLYQQLDDLLISGCVLTEKLHDDLPNGAEGRRLANVLAECL
DEDGYEDVRDGEADEPKLLFASETPSQQRYICEVLAPFAWTYVTVAQSLQ
ILHKNSMLESEFISFVINDLSSKVKRGSCIYAESISTDSVRNCLKLLEKW
SVIEVCNQQGMRLISLNTLYEMSRESLNSIVKKIDAIVPKFNSGYFSVTP
*

BS05413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
mino-PE 850 CG5508-PE 1..850 1..850 4315 100 Plus
mino-PA 850 CG5508-PA 1..850 1..850 4315 100 Plus
mino-PC 786 CG5508-PC 14..786 78..850 3950 100 Plus
mino-PB 757 CG5508-PB 1..757 94..850 3865 100 Plus
Dhap-at-PB 724 CG4625-PB 95..412 194..497 297 27.6 Plus