Clone Sequence Records
BS05414.3prime Sequence
937 bp (685 high quality bases) assembled on 2005-12-02
> BS05414.3prime
ATGGTCTAGAAAGCTTCTAGTAAAGTATGCATTTCTCACTAGGATTCATG
GCGGATCCGGCTGGGCAGTTGAACTCCTTCGAGAACTCCTCGAAGTTAGA
TAAAGATCCAATAACGCGGAATCTTCCGGGCATGTGCTGGTCGGTTGACA
CCTGAAGTGCCTTCACACTGGGATGTGCATCATTGCACCAGCTCTGAGCA
AAGCTAATGAAGAATAGTTGTTTGGCGGTGTATCGCAGGTTGGGCAGGGT
CTCCTTGGTCATATCCTGAGCCCCATTGGGAAGTGTCAACTGGTTTTCGT
ACCATTTCCGGTAGGCGGTGTAGGCCAGTCGCATTCCGCCGTTGTCCGCA
ATGTTCTCCGACTGCGCGGTTGACTCCTTTAACTGAATGCCATCGTAGAC
ATACCTGCCATACTGCTTGGTGAAGCAGTCCCTTCGTTTCAGGAAGTTGC
TGCTGGACTTCTCATCCCACCAATCCTTCGAGTTTCCCTTCTCATCGAAC
TTCCGCCCGCTGTCGTCGAATCCGTGGATTAACTCGTGTCCAATTAGGGA
GGCCAGGGTTCCGAACATAATCGCATTGGGGTAGACATCGGACCAAATGT
AGAAGGGTTGTAGCAGGGCCACCGGAACCTTGATGGTGTTCTCTATCAGG
ATGTTGGCCGGGGTGTAACTGAGTTGGGAGCCCGCCTCAAAGGGTTTGGC
CGGCTTGTGAAGCATCTCCCGCATCTGTTTGGCCCCAAGTAGGCTTGTAT
ATCGCACATTCTCCACGTAGTCGTCACTTTGCAGATTGAGTTCGGCAAAC
TCCTCGGTGAAGTTGTCGTCTGCGTAGTTGTTGACCTCCAGCGTCATTGC
CTGTAGCTTCGCCATAGCANGATCCCGGGTGGGTCGCTCAATCCAATCAA
GGCGGGACTGGAACGGAGGGTCTCGTTAAAGGTAGAC
BS05414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14526-PA | 2052 | CG14526-RA | 1172..2052 | 897..17 | 4361 | 99.7 | Minus |
| CG14527-PA | 2103 | CG14527-RA | 1464..2054 | 656..66 | 2205 | 94.9 | Minus |
| CG14526-PA | 2052 | CG14526-RA | 1131..1171 | 937..897 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14526-RC | 2323 | CG14526-RC | 1203..2124 | 937..17 | 4559 | 99.7 | Minus |
| CG14527-RA | 2154 | CG14527-RA | 1193..2115 | 937..16 | 2804 | 87.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28884895..28885816 | 937..17 | 4534 | 99.7 | Minus |
| 3R | 32079331 | 3R | 28881984..28882906 | 937..16 | 2769 | 86.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:10:40 has no hits.
BS05414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:35 Download gff for
BS05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-PA | 1131..2052 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:48 Download gff for
BS05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-PA | 1131..2052 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:01:07 Download gff for
BS05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RC | 1203..2131 | 11..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:07 Download gff for
BS05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RC | 1203..2131 | 11..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:07 Download gff for
BS05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28884895..28885823 | 11..937 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:01:07 Download gff for
BS05414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24710617..24711545 | 11..937 | 99 | | Minus |
BS05414.5prime Sequence
847 bp (666 high quality bases) assembled on 2005-12-02
> BS05414.5prime
GAAGTTATCAGTCGACATGGTCGCGGCTGCTCCTACCAGCGAGGAAGATC
TCAAACAGGACACGCCCTACATGAAGGAACTATTGCGTCAGGCGAAGACT
GCTGAGATAGAGAGCTTTATGGACCAGAAGGCGGATCCGTGCAACGATTT
CTACGCATTCTCCTGTGGCAATTATAAGCGCATCAACTCGGCTTTGAGCA
TGCAGGTGGTCACCACTGGAGTATTCGAGACTCTGACCAAAGGACTTAAC
CGAAAGATCCTGAAGATGCTCAACACACCCCACGATTCCCACGACACTCC
GGAAGACATTAAGGTGAAGCATTTCTACGAGTCCTGTCTCCAGATCAAGG
AGCTCAACTCGACGTACAGCGAAAAGCTGAAGCGGCTCATTGCAGAATTT
GGAACGATGCCGCTGCTCGAAGGATCCTCCTGGCAGGAGGACGACTTCGA
CTGGCTGAATACTACTGCTCGCATGGCCTACCGATACGGTATAACTCCCA
TTTTCGGCATTGAGGTGAACAAAGACTTGGCCAGCAATACCCGGAATCGG
ATATACTTGGGTCAGCAGGACTTCCCGCTGGAGGCGCGGTCCATGTACGT
CGATGATGCAACAGCAGTATATCGTCAGAAATATCGTAATAATATCCAGC
GCATCTTGCAGCGTTACCTGGGCGTGAAGATGGATTTGGCCAAAAAAACG
GCCAAGGAACTGATTGACTTTGAGGTGGACTTGGCTCAAGGACTGGTGGA
CGAGAGTGAAGGACTAGATGTGGGTGAATTTGACCAGTTACTCACAGTGG
ACGAAATCCAGAGAAGGTACTCCCCCACTTGGATATCGACCGATTGC
BS05414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14526-PA | 2052 | CG14526-RA | 1..764 | 17..780 | 3820 | 100 | Plus |
| CG14527-PA | 2103 | CG14527-RA | 250..524 | 215..489 | 1025 | 94.9 | Plus |
| CG14527-PA | 2103 | CG14527-RA | 134..238 | 99..203 | 350 | 93.3 | Plus |
| CG14526-PA | 2052 | CG14526-RA | 768..812 | 784..828 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14526-RC | 2323 | CG14526-RC | 73..904 | 17..847 | 4090 | 99.6 | Plus |
| CG14527-RA | 2154 | CG14527-RA | 84..797 | 38..751 | 1815 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28883765..28884596 | 17..847 | 4065 | 99.5 | Plus |
| 3R | 32079331 | 3R | 28880875..28881588 | 38..751 | 1815 | 83.6 | Plus |
Blast to na_te.dros performed 2015-02-10 22:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 5320..5363 | 562..519 | 112 | 72.7 | Minus |
BS05414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:36 Download gff for
BS05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-PA | 1..832 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:49 Download gff for
BS05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-PA | 1..832 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:49:07 Download gff for
BS05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RC | 67..904 | 10..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:23 Download gff for
BS05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RC | 67..904 | 10..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:23 Download gff for
BS05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28883761..28884596 | 11..847 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:49:07 Download gff for
BS05414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24709483..24710318 | 11..847 | 99 | | Plus |
BS05414.complete Sequence
2084 bp assembled on 2009-12-07
GenBank Submission: KX796607
> BS05414.complete
GAAGTTATCAGTCGACATGGTCGCGGCTGCTCCTACCAGCGAGGAAGATC
TCAAACAGGACACGCCCTACATGAAGGAACTATTGCGTCAGGCGAAGACT
GCTGAGATAGAGAGCTTTATGGACCAGAAGGCGGATCCGTGCAACGATTT
CTACGCATTCTCCTGTGGCAATTATAAGCGCATCAACTCGGCTTTGAGCA
TGCAGGTGGTCACCACTGGAGTATTCGAGACTCTGACCAAAGGACTTAAC
CGAAAGATCCTGAAGATGCTCAACACACCCCACGATTCCCACGACACTCC
GGAAGACATTAAGGTGAAGCATTTCTACGAGTCCTGTCTCCAGATCAAGG
AGCTCAACTCGACGTACAGCGAAAAGCTGAAGCGGCTCATTGCAGAATTT
GGAACGATGCCGCTGCTCGAAGGATCCTCCTGGCAGGAGGACGACTTCGA
CTGGCTGAATACTACTGCTCGCATGGCCTACCGATACGGTATAACTCCCA
TTTTCGGCATTGAGGTGAACAAAGACTTGGCCAGCAATACCCGGAATCGG
ATATACTTGGGTCAGCAGGACTTCCCGCTGGAGGCGCGGTCCATGTACGT
CGATGATGCAACAGCAGTATATCGTCAGAAATATCGTAATAATATCCAGC
GCATCTTGCAGCGTTACCTGGGCGTGAAGATGGATTTGGCCAAAAAAACG
GCCAAGGAACTGATTGACTTTGAGGTGGACTTGGCTCAAGGACTGGTGGA
CGAGAGTGAAGGACTAGATGTGGGTGAATTGACCCAGTTACTCACAGTGG
ACGAAATCCAGAGAAGGTACTCCCCCACCTTGGATATCGACCGATTGCTA
TTTGTGAGCATGGGAGAGCGCATTTCAGACCAGATCTACGAATATAACAA
TCGTTATCAGCAAAACTTGGTCGAAGTCATCAAGCGTACGCCGAAGCGCA
CTGTAGCCAACTATATATTTTTCCGGCTGATCTGGGAGTTTGTGGAGACG
CCTTCAGATTCGCCGGAGAAGCAGATGAAGGCATGCGTGGACCTTACCAA
AAAGTACTTTGCCAAGAATCTTGACAACATGTTCTATCGTCGCTACAACA
ACGAGAAATCCTCTAGAGAAATCGACAACATGTGGCGTCAATTGAAGTCT
ACCTTTAACGAGACCCTCCGTTCCAGTCCCGCCTTGAATTGGATTGAGCG
ACCCACCCGGAATCTTGCTATGGCGAAGCTACAGGCAATGACGCTGGAGG
TCAACAACTACGCAGACGACAACTTCACCGAGGAGTTTGCCGAACTCAAT
CTGCAAAGTGACGACTACGTGGAGAATGTGCGATATACAAGCCTACTTGG
GGCCAAACAGATGCGGGAGATGCTTCACAAGCCGGCCAAACCCTTTGAGG
CGGGCTCCCAACTCAGTTACACCCCGGCCAACATCCTGATAGAGAACACC
ATCAAGGTTCCGGTGGCCCTGCTACAACCCTTCTACATTTGGTCCGATGT
CTACCCCAATGCGATTATGTTCGGAACCCTGGCCTCCCTAATTGGACACG
AGTTAATCCACGGATTCGACGACAGCGGGCGGAAGTTCGATGAGAAGGGA
AACTCGAAGGATTGGTGGGATGAGAAGTCCAGCAGCAACTTCCTGAAACG
AAGGGACTGCTTCACCAAGCAGTATGGCAGGTATGTCTACGATGGCATTC
AGTTAAAGGAGTCAACCGCGCAGTCGGAGAACATTGCGGACAACGGCGGA
ATGCGACTGGCCTACACCGCCTACCGGAAATGGTACGAAAACCAGTTGAC
ACTTCCCAATGGGGCTCAGGATATGACCAAGGAGACCCTGCCCAACCTGC
GATACACCGCCAAACAACTATTCTTCATTAGCTTTGCTCAGAGCTGGTGC
AATGATGCACATCCCAGTGTGAAGGCACTTCAGGTGTCAACCGACCAGCA
CATGCCCGGAAGATTCCGCGTTATTGGATCTTTATCTAACTTCGAGGAGT
TCTCGAAGGAGTTCAACTGCCCAGCCGGATCCGCCATGAATCCTAGTGAG
AAATGCATACTTTACTAGAAGCTTTCTAGACCAT
BS05414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14526-RC | 2124 | CG14526-PC | 73..2124 | 17..2068 | 10260 | 100 | Plus |
| CG14527-RA | 2103 | CG14527-PA | 73..2103 | 38..2068 | 5115 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14526-RC | 2323 | CG14526-RC | 73..2124 | 17..2068 | 10260 | 100 | Plus |
| CG14527-RA | 2154 | CG14527-RA | 84..2115 | 38..2069 | 5120 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28883765..28885816 | 17..2068 | 10260 | 100 | Plus |
| 3R | 32079331 | 3R | 28880875..28882906 | 38..2069 | 5120 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:20:51 has no hits.
BS05414.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:38 Download gff for
BS05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RA | 63..2114 | 17..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:01 Download gff for
BS05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RC | 73..2124 | 17..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:25 Download gff for
BS05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RA | 63..2114 | 17..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:27 Download gff for
BS05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RC | 73..2124 | 17..2068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:27 Download gff for
BS05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28883765..28885816 | 17..2068 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:01 Download gff for
BS05414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24709487..24711538 | 17..2068 | 100 | | Plus |
BS05414.pep Sequence
Translation from 16 to 2067
> BS05414.pep
MVAAAPTSEEDLKQDTPYMKELLRQAKTAEIESFMDQKADPCNDFYAFSC
GNYKRINSALSMQVVTTGVFETLTKGLNRKILKMLNTPHDSHDTPEDIKV
KHFYESCLQIKELNSTYSEKLKRLIAEFGTMPLLEGSSWQEDDFDWLNTT
ARMAYRYGITPIFGIEVNKDLASNTRNRIYLGQQDFPLEARSMYVDDATA
VYRQKYRNNIQRILQRYLGVKMDLAKKTAKELIDFEVDLAQGLVDESEGL
DVGELTQLLTVDEIQRRYSPTLDIDRLLFVSMGERISDQIYEYNNRYQQN
LVEVIKRTPKRTVANYIFFRLIWEFVETPSDSPEKQMKACVDLTKKYFAK
NLDNMFYRRYNNEKSSREIDNMWRQLKSTFNETLRSSPALNWIERPTRNL
AMAKLQAMTLEVNNYADDNFTEEFAELNLQSDDYVENVRYTSLLGAKQMR
EMLHKPAKPFEAGSQLSYTPANILIENTIKVPVALLQPFYIWSDVYPNAI
MFGTLASLIGHELIHGFDDSGRKFDEKGNSKDWWDEKSSSNFLKRRDCFT
KQYGRYVYDGIQLKESTAQSENIADNGGMRLAYTAYRKWYENQLTLPNGA
QDMTKETLPNLRYTAKQLFFISFAQSWCNDAHPSVKALQVSTDQHMPGRF
RVIGSLSNFEEFSKEFNCPAGSAMNPSEKCILY*
BS05414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14526-PC | 707 | CG14526-PC | 25..707 | 1..683 | 3581 | 100 | Plus |
| CG14527-PA | 700 | CG14527-PA | 18..700 | 1..683 | 2972 | 81 | Plus |
| CG14528-PA | 682 | CG14528-PA | 31..682 | 10..683 | 1161 | 36.2 | Plus |
| CG14529-PA | 681 | CG14529-PA | 32..681 | 16..683 | 960 | 31.9 | Plus |
| CG14523-PA | 671 | CG14523-PA | 49..666 | 15..683 | 909 | 32.1 | Plus |
