Clone Sequence Records
BS05415.3prime Sequence
857 bp (855 high quality bases) assembled on 2005-12-02
> BS05415.3prime
ATGGTCTAGAAAGCTTTTAGTGGAGACAGTAGGCCACGATTAGGGTCACC
ACCGTGGAGATGAAGCTAAAGTGTCCAAAAGTTCGCTCTGCCATACTATG
CGCATCCTTGACGATAGATTCCGCCGAGAGTCGAGCCTGTGTCAGACCCG
GCATCTTCATAATATCGGGCTGACCACCGGGAACTATGGGTGCCAATGGT
ACAGATCCCTCGGGAATGGCCACAGGAGTGGTCGGCTGAATGGGAGCCAG
TTGAACGGATTCGGGAGCGGAAACGGGAGGGGGTACTGCACCCTCCACGG
CTGGTGCCGTTCCATTGGCTGGAGTAGCAGTCTCCGGTGGCGGTGCTGGA
TAGCACGCGATCTGATCCAACTCAATAGTCTTGGTAGGATCTTTAGGATC
CGGACCGGGCACTTTAACGGGCACACAGATGATGCCACCACCAGGTGGTG
CATTGGGATCAGCAGGGGCTCCAGGTGCAGGAGGGACTGGCGCGTTTGGA
TCCGCCGGATTGGGTGCAACTGCGGGTGCAGGAGCCACAGGAGATCCGGG
TGCAACAGGAGCTCCAGAAGCAGATACAGGTGCCGCTGGATCAACGGGAG
CAGGTGGCGATGGACCTAGAGGCGCCAGTGGAACTGATCCTGCAACTGGG
GCTGGAGGAACGGGTAGAGCTTGAGAGTCAGTAACAGGTGGAGCGGCATA
AACAGGTGGCACTGGCACAGCTGGAGAAGCGGCTGCTTGGTTTCCTCCAG
CATTTATCACCGTAGTACCCGATCCCACATCTGTGGTGGTCACAGATCCA
GGTGGTCCGTTATTGATAATGATGATTTTGTCGTCACCACCATGGGTGCC
TCCGCCT
BS05415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31705-PA | 2049 | CG31705-RA | 1209..2049 | 857..17 | 4205 | 100 | Minus |
| CG31705-PB | 2049 | CG31705-RB | 1209..2049 | 857..17 | 4205 | 100 | Minus |
| CG31705-PC | 2049 | CG31705-RC | 1209..2049 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31705-RE | 2664 | CG31705-RE | 1295..2135 | 857..17 | 4205 | 100 | Minus |
| CG31705-RD | 2477 | CG31705-RD | 1391..2231 | 857..17 | 4205 | 100 | Minus |
| CG31705-RA | 2381 | CG31705-RA | 1295..2135 | 857..17 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11523550..11524390 | 17..857 | 4205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:08:03 has no hits.
BS05415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:37 Download gff for
BS05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-PB | 1209..2049 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:51 Download gff for
BS05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-PC | 1209..2049 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:22:27 Download gff for
BS05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 1295..2139 | 13..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:35 Download gff for
BS05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 1295..2139 | 13..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:35 Download gff for
BS05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11523546..11524390 | 13..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:22:27 Download gff for
BS05415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11523546..11524390 | 13..857 | 99 | | Plus |
BS05415.5prime Sequence
846 bp (780 high quality bases) assembled on 2005-12-02
> BS05415.5prime
GAAGTTATCAGTCGACATGACCACTTACCCGACGCGGTTCAGTGGCAGCC
TGCTGGTGGTGGTGCTCCTAATATTGGCCCTGACCACCGAGGATGCGCAT
GCCAAATGGAAGTCCACTGGCAGCAGAAGTCGCACCAGTTCCTCTTCTAA
CAGAAGGACCTCCTCACACAGCTACTCTGCGCCATCGCATTCAGTCCCAT
CGCACCACGCAGCTCCTGCTCCACACCATGATAATGTCAGGCTGAGCTAC
GGAGGTGGATCCCACTCGCAGCCGGTGAGCAAGGTGAGCAGCTCCCAAAC
GCACAGTGCGGCTCCTTCGGCACCCGCGTCACCAATTGGCTGGAATGTCC
CAGCAAAGCCCCAAGGACCTCCGCCGGCGTACTCAGCCTCGAATCCAGTG
GGCGGAGCTCACACCAACATACATGAGCGTCCGCCAGCCTACAACCCGGC
ATACAAGCCAGCTCCACCTAGCTATTCGGCTGCCACCCAAACGCACAGCA
ACACGAATCTCCAGAGCCCATATCGTCCAGCAGGAGCAGCCAGTCCTGGT
GCCAGTTCCAGTTCAAGTGGTTCCCACTACTATGGCGGAGCACACAACAC
AGCCTATAGAGGACGTAATAACTCCACTGGTGGATTTGGTTCCTCCGGTG
GATATCAGCCGATAACGGCCACCAATGCCCATAATGTGCAGTCCAGCTAT
CCTCGCCAACAGTTGCCAGCAGGTGCCACCTACCACCCGGCAGGTCAACT
TCCAGCCGGAGCCACCTACCACCCAGCCGGGGCAATTCCAGCCGGAGCCT
CATACCATCCGGCAGGTCAATTGCCGGCTGGTGCTTCATACCACCC
BS05415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31705-PA | 2049 | CG31705-RA | 1..830 | 17..846 | 4100 | 99.7 | Plus |
| CG31705-PB | 2049 | CG31705-RB | 1..830 | 17..846 | 4100 | 99.7 | Plus |
| CG31705-PC | 2049 | CG31705-RC | 1..830 | 17..846 | 4100 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31705-RE | 2664 | CG31705-RE | 83..916 | 13..846 | 4125 | 99.6 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 83..916 | 13..846 | 4125 | 99.6 | Plus |
| CG31705-RD | 2477 | CG31705-RD | 183..1012 | 17..846 | 4120 | 99.8 | Plus |
| CG31705-RE | 2664 | CG31705-RE | 822..931 | 716..825 | 205 | 80.2 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 822..931 | 716..825 | 205 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11524837..11525666 | 846..17 | 4120 | 99.8 | Minus |
| 2L | 23513712 | 2L | 11524822..11524931 | 825..716 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:29:19 has no hits.
BS05415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:38 Download gff for
BS05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-PB | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:52 Download gff for
BS05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-PC | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:38:40 Download gff for
BS05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 77..916 | 7..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:23 Download gff for
BS05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 77..916 | 7..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:23 Download gff for
BS05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11524837..11525670 | 9..846 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:38:40 Download gff for
BS05415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11524837..11525670 | 9..846 | 99 | | Minus |
BS05415.complete Sequence
2081 bp assembled on 2008-08-15
GenBank Submission: KX793998
> BS05415.complete
GAAGTTATCAGTCGACATGACCACTTACCCGACGCGGTTCAGTGGCAGCC
TGCTGGTGGTGGTGCTCCTAATATTGGCCCTGACCACCGAGGATGCGCAT
GCCAAATGGAAGTCCACTGGCAGCAGAAGTCGCACCAGTTCCTCTTCTAA
CAGAAGGACCTCCTCACACAGCTACTCTGCGCCATCGCATTCAGTCCCAT
CGCACCACGCAGCTCCTGCTCCACACCATGATAATGTCAGGCTGAGCTAC
GGAGGTGGATCCCACTCGCAGCCGGTGAGCAAGGTGAGCAGCTCCCAAAC
GCACAGTGCGGCTCCTTCGGCACCCGCGTCACCAATTGGCTGGAATGTCC
CAGCAAAGCCCCAAGGACCTCCGCCGGCGTACTCAGCCTCGAATCCAGTG
GGCGGAGCTCACACCAACATACATGAGCGTCCGCCAGCCTACAACCCGGC
ATACAAGCCAGCTCCACCTAGCTATTCGGCTGCCACCCAAACGCACAGCA
ACACGAATCTCCAGAGCCCATATCGTCCAGCAGGAGCAGCCAGTCCTGGT
GCCAGTTCCAGTTCAAGTGGTTCCCACTACTATGGCGGAGCACACAACAC
AGCCTATAGAGGACGTAATAACTCCACTGGTGGATTTGGTTCCTCCGGTG
GATATCAGCCGATAACGGCCACCAATGCCCATAATGTGCAGTCCAGCTAT
CCTCGCCAACAGTTGCCAGCAGGTGCCACCTACCACCCGGCAGGTCAACT
TCCAGCCGGAGCCACCTACCACCCAGCCGGGCAAATTCCAGCCGGAGCCT
CATACCATCCGGCAGGTCAATTGCCGGCTGGTGCTTCATACCACCCAGCG
GGTCAAGTGCCCCACGGAGCGACCTACTACCCCACGGGTCAGGTTCCAGC
CGGTGCCAGCTACCATCCGTCGGGTGGATATCCCGCAGGAGCATCTTACC
ATCCAGTCGGACAAGTGCCCCATGGAGCCACCTATTATCCACAAGGACCA
GTCGGCGGAGGTCTGCCCGCAGGAGCCACCTTCCTGCCCGCTGGCGGAGT
TTTGCCTGCAGGAGCTGTTTACTATCCACAGGCGCCGCAGAAGTCATCAT
CAGGCTTGGGATTGGGCACTGGTCTTATCGCTGGAGCATTGGGTGGTGCC
ATCCTGGGTCACGCACTGACACCCACCCACACGCGTGTGGTGGAGAGTTC
CAATTCTTATTCCGGCGGTGGTGGAGGCGGAGGCACCCATGGTGGTGACG
ACAAAATCATCATTATCAATAACGGACCACCTGGATCTGTGACCACCACA
GATGTGGGATCGGGTACTACGGTGATAAATGCTGGAGGAAACCAAGCAGC
CGCTTCTCCAGCTGTGCCAGTGCCACCTGTTTATGCCGCTCCACCTGTTA
CTGACTCTCAAGCTCTACCCGTTCCTCCAGCCCCAGTTGCAGGATCAGTT
CCACTGGCGCCTCTAGGTCCATCGCCACCTGCTCCCGTTGATCCAGCGGC
ACCTGTATCTGCTTCTGGAGCTCCTGTTGCACCCGGATCTCCTGTGGCTC
CTGCACCCGCAGTTGCACCCAATCCGGCGGATCCAAACGCGCCAGTCCCT
CCTGCACCTGGAGCCCCTGCTGATCCCAATGCACCACCTGGTGGTGGCAT
CATCTGTGTGCCCGTTAAAGTGCCCGGTCCGGATCCTAAAGATCCTACCA
AGACTATTGAGTTGGATCAGATCGCGTGCTATCCAGCACCGCCACCGGAG
ACTGCTACTCCAGCCAATGGAACGGCACCAGCCGTGGAGGGTGCAGTACC
CCCTCCCGTTTCCGCTCCCGAATCCGTTCAACTGGCTCCCATTCAGCCGA
CCACTCCTGTGGCCATTCCCGAGGGATCTGTACCATTGGCACCCATAGTT
CCCGGTGGTCAGCCCGATATTATGAAGATGCCGGGTCTGACACAGGCTCG
ACTCTCGGCGGAATCTATCGTCAAGGATGCGCATAGTATGGCAGAGCGAA
CTTTTGGACACTTTAGCTTCATCTCCACGGTGGTGACCCTAATCGTGGCC
TACTGTCTCCACTAAAAGCTTTCTAGACCAT
BS05415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31705-RE | 2049 | CG31705-PE | 1..2049 | 17..2065 | 10245 | 100 | Plus |
| CG31705-RD | 2049 | CG31705-PD | 1..2049 | 17..2065 | 10245 | 100 | Plus |
| CG31705-RA | 2049 | CG31705-PA | 1..2049 | 17..2065 | 10245 | 100 | Plus |
| CG31705-RE | 2049 | CG31705-PE | 700..809 | 752..861 | 220 | 80 | Plus |
| CG31705-RE | 2049 | CG31705-PE | 736..845 | 716..825 | 220 | 80 | Plus |
| CG31705-RD | 2049 | CG31705-PD | 700..809 | 752..861 | 220 | 80 | Plus |
| CG31705-RD | 2049 | CG31705-PD | 736..845 | 716..825 | 220 | 80 | Plus |
| CG31705-RE | 2049 | CG31705-PE | 697..860 | 821..984 | 205 | 75 | Plus |
| CG31705-RE | 2049 | CG31705-PE | 805..968 | 713..876 | 205 | 75 | Plus |
| CG31705-RD | 2049 | CG31705-PD | 697..860 | 821..984 | 205 | 75 | Plus |
| CG31705-RD | 2049 | CG31705-PD | 805..968 | 713..876 | 205 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31705-RE | 2664 | CG31705-RE | 83..2135 | 13..2065 | 10250 | 100 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 83..2135 | 13..2065 | 10250 | 100 | Plus |
| CG31705-RD | 2477 | CG31705-RD | 183..2231 | 17..2065 | 10245 | 100 | Plus |
| CG31705-RE | 2664 | CG31705-RE | 786..895 | 752..861 | 220 | 80 | Plus |
| CG31705-RE | 2664 | CG31705-RE | 822..931 | 716..825 | 220 | 80 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 786..895 | 752..861 | 220 | 80 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 822..931 | 716..825 | 220 | 80 | Plus |
| CG31705-RE | 2664 | CG31705-RE | 783..946 | 821..984 | 205 | 75 | Plus |
| CG31705-RE | 2664 | CG31705-RE | 891..1054 | 713..876 | 205 | 75 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 783..946 | 821..984 | 205 | 75 | Plus |
| CG31705-RA | 2381 | CG31705-RA | 891..1054 | 713..876 | 205 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11524567..11525666 | 1116..17 | 5500 | 100 | Minus |
| 2L | 23513712 | 2L | 11523550..11524500 | 2065..1115 | 4755 | 100 | Minus |
| 2L | 23513712 | 2L | 11524822..11524931 | 825..716 | 220 | 80 | Minus |
| 2L | 23513712 | 2L | 11524858..11524967 | 861..752 | 220 | 80 | Minus |
| 2L | 23513712 | 2L | 11524807..11524970 | 984..821 | 205 | 75 | Minus |
| 2L | 23513712 | 2L | 11524699..11524862 | 876..713 | 205 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:28:38 has no hits.
BS05415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:28:38 Download gff for
BS05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 73..2135 | 7..2069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:05 Download gff for
BS05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 87..2133 | 17..2063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:47 Download gff for
BS05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 83..2129 | 17..2063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:43 Download gff for
BS05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31705-RA | 87..2133 | 17..2063 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:43 Download gff for
BS05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11523552..11524499 | 1116..2063 | 100 | <- | Minus |
| 2L | 11524568..11525666 | 17..1115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:05 Download gff for
BS05415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11523552..11524499 | 1116..2063 | 100 | <- | Minus |
| arm_2L | 11524568..11525666 | 17..1115 | 100 | | Minus |
BS05415.pep Sequence
Translation from 16 to 2064
> BS05415.pep
MTTYPTRFSGSLLVVVLLILALTTEDAHAKWKSTGSRSRTSSSSNRRTSS
HSYSAPSHSVPSHHAAPAPHHDNVRLSYGGGSHSQPVSKVSSSQTHSAAP
SAPASPIGWNVPAKPQGPPPAYSASNPVGGAHTNIHERPPAYNPAYKPAP
PSYSAATQTHSNTNLQSPYRPAGAASPGASSSSSGSHYYGGAHNTAYRGR
NNSTGGFGSSGGYQPITATNAHNVQSSYPRQQLPAGATYHPAGQLPAGAT
YHPAGQIPAGASYHPAGQLPAGASYHPAGQVPHGATYYPTGQVPAGASYH
PSGGYPAGASYHPVGQVPHGATYYPQGPVGGGLPAGATFLPAGGVLPAGA
VYYPQAPQKSSSGLGLGTGLIAGALGGAILGHALTPTHTRVVESSNSYSG
GGGGGGTHGGDDKIIIINNGPPGSVTTTDVGSGTTVINAGGNQAAASPAV
PVPPVYAAPPVTDSQALPVPPAPVAGSVPLAPLGPSPPAPVDPAAPVSAS
GAPVAPGSPVAPAPAVAPNPADPNAPVPPAPGAPADPNAPPGGGIICVPV
KVPGPDPKDPTKTIELDQIACYPAPPPETATPANGTAPAVEGAVPPPVSA
PESVQLAPIQPTTPVAIPEGSVPLAPIVPGGQPDIMKMPGLTQARLSAES
IVKDAHSMAERTFGHFSFISTVVTLIVAYCLH*
BS05415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31705-PE | 682 | CG31705-PE | 1..682 | 1..682 | 3650 | 100 | Plus |
| CG31705-PD | 682 | CG31705-PD | 1..682 | 1..682 | 3650 | 100 | Plus |
| CG31705-PA | 682 | CG31705-PA | 1..682 | 1..682 | 3650 | 100 | Plus |
| CG5273-PB | 469 | CG5273-PB | 25..430 | 159..618 | 514 | 34.8 | Plus |
| CG5273-PC | 469 | CG5273-PC | 25..430 | 159..618 | 514 | 34.8 | Plus |
| CG5273-PB | 469 | CG5273-PB | 36..434 | 32..500 | 384 | 32.8 | Plus |
