Clone Sequence Records
BS05419.3prime Sequence
1020 bp (760 high quality bases) assembled on 2005-12-02
> BS05419.3prime
ATGGTCTAGAAAGCTTCTAGAGGTGAGCCTTCATGAATGGCTTCAAGTAC
TTGTGGAATGCTCCGTTGACTGGCTCCTTGTTCAACGGGTTCTTCTTCGT
AGACTCGAAGATGTGTTCGTAAACATTTCCATCATAGGCACCCAATGCGG
AATCTAGCACGCGATCGTGAAGATCAAAGCTGTCCACCAAGCTGACGGCA
TTCGGCCGGAATCGTTTTAAGCAGTTCTCCAGGCGAACCTCCAGTTTCGT
GACATCTTGATCAGTGAGATCAATGAACCGCAAGAAGTCGCCAATGCGGT
TGAGGCAGGCGTCTACCAGATACAGCTCCAGCACCACCTTTAGGACTTCA
GCTAGTTCTGGGGACACCTCGCGCGACAAGGCCAAAAGCTCCGTATAGGC
AGTCTGCGCTAGGAAGGCGCGTCCATGAAGATCTGCAGCTGCTGTTAGGA
AGGTGCCACATAGATTAGCTGCCACCTCGGTACCATAACCTTGCTTGCGG
CGCAGTTCAATCTGCTCATAGGCAATTCGGGTTTTGTTGGCGGCAACGAA
TTGGAAAGCCTTGACAATAGACCTCAATGATCCGTCAAAGTTAACAAACT
TGGTTTGGTTTATTGCATCACTGATGTACGAAACCGTTGGCACCAGCTTC
TCTCCATTCAAGGCCTGCCCATAAACCTTCACCAAATAGCGAGCAGTCTG
CAGCAGCATCACTGTGTTCTCGCCCTCATAGGTGCAAACGGCCGTGGTCA
TGCCGTATATCGTGGGGGAGTTGGAGCAGTCCATGTAGCCATGTCCGCCA
CATGACAGACGACACGTTTCCACGCCGGCGGCGGCATCGGCACTACAGAT
GGCCTTAAGGCAGCAGGACAATGCATGCATTTCGGGCAGGCGATCCAAGT
TACCCTGCTCAATCTCGCCAGATATCACGTTGTACATATTCCAGATGGCA
TCACCCGTCGTTTTTGAAACGATGGCTTTACCTATCTGGGGGAACACTTC
AACTGCTGGGTGGGAATGGC
BS05419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5009-PA | 2010 | CG5009-RA | 1031..2010 | 996..17 | 4775 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5009-RA | 2506 | CG5009-RA | 1339..2337 | 1013..16 | 4880 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17763187..17763664 | 1013..537 | 2250 | 98.5 | Minus |
2R | 25286936 | 2R | 17764110..17764372 | 278..16 | 1315 | 100 | Minus |
2R | 25286936 | 2R | 17763899..17764051 | 430..278 | 765 | 100 | Minus |
2R | 25286936 | 2R | 17763730..17763835 | 536..431 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:49:15 has no hits.
BS05419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:41 Download gff for
BS05419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-PA | 1006..2010 | 17..1020 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:57 Download gff for
BS05419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-PA | 1006..2010 | 17..1020 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:03:01 Download gff for
BS05419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 1332..2337 | 16..1020 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:37 Download gff for
BS05419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 1332..2337 | 16..1020 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:37 Download gff for
BS05419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17763899..17764051 | 278..430 | 100 | -> | Minus |
2R | 17764111..17764372 | 16..277 | 100 | | Minus |
2R | 17763180..17763664 | 537..1020 | 97 | -> | Minus |
2R | 17763730..17763835 | 431..536 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:03:01 Download gff for
BS05419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13650685..13651169 | 537..1020 | 97 | -> | Minus |
arm_2R | 13651235..13651340 | 431..536 | 100 | -> | Minus |
arm_2R | 13651404..13651556 | 278..430 | 100 | -> | Minus |
arm_2R | 13651616..13651877 | 16..277 | 100 | | Minus |
BS05419.5prime Sequence
800 bp (769 high quality bases) assembled on 2005-12-02
> BS05419.5prime
GAAGTTATCAGTCGACATGCCAGCCAAACCAGTGAATCCCGATCTCCAGA
AGGAACGCAGCACGGCCACCTTCAATCCCCGGGAGTTCTCCGTTCTGTGG
GCCGGCGGCGAGGAGCGATTCAAGGAGAAGAAGGCCCTGGAGAAATTGTT
TTTGGAGGATCCAGCCCTTCAGGACGACTTGCCCATTTCCTATTTGTCAC
ACAAGGAGCTCTATGAGCACAGCTTGCGCAAAGCCTGCATCATAGGAGAG
AAGATCCGCAAGCTACGTGCTGATGGCGAGGATGGAGTGGATACTTACAA
TGCTCTGCTTGGTGGATCCTTGGGATCGGCTATTCTAAAGGAGGGCAATC
CGCTTGCGCTGCACTACGTGATGTTCGTGCCCACCATCATGGGCCAGGGA
ACGATGGATCAGCAGGTGGAATGGCTGAGCAAGGCCTGGGACTGTGAAAT
CATTGGCACCTATGCCCAAACGGAACTGGGACACGGAACCTTCCTGCGCG
GTCTGGAGACCAGGGCTGACTACGATGCCAGCACCCAGGAGTTTGTTATA
AACACTCCATCACTCAGTGCATACAAGTGGTGGCCCGGTGGATTGGGACA
CACTGCTAACCATGCGGTTGTGGTGGCACAACTCTACACCAAGGGCGAGT
TCCGTGGTCTGGCTCCTTTTATTGTCCAATTGAGGGATTCCGATACTCAC
CGTCCCATGCCCGGCATCGACATTGGAGATATTGGTACCAAGCTGGGCAT
GAAGGGTGTCAACAATGGCTATTTGGGACTGAAGAACGTACGGGTGCCTT
BS05419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5009-PA | 2010 | CG5009-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
CG9707-PA | 2034 | Acox57D-p-RA | 460..512 | 455..507 | 165 | 92.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5009-RA | 2506 | CG5009-RA | 327..1110 | 17..800 | 3920 | 100 | Plus |
CG4586-RA | 2240 | CG4586-RA | 554..691 | 455..592 | 255 | 79 | Plus |
Acox57D-p-RB | 2235 | CG9707-RB | 516..568 | 455..507 | 205 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17762336..17762635 | 294..593 | 1470 | 99.3 | Plus |
2R | 25286936 | 2R | 17762693..17762899 | 594..800 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 17762128..17762288 | 140..300 | 805 | 100 | Plus |
2R | 25286936 | 2R | 17761266..17761389 | 17..140 | 620 | 100 | Plus |
X | 23542271 | X | 6970471..6970608 | 455..592 | 255 | 79 | Plus |
2R | 25286936 | 2R | 21387296..21387348 | 455..507 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:52:11 has no hits.
BS05419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:42 Download gff for
BS05419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-PA | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:58 Download gff for
BS05419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-PA | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:23:16 Download gff for
BS05419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 319..1110 | 7..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:48:40 Download gff for
BS05419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 319..1110 | 7..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:48:40 Download gff for
BS05419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17761258..17761389 | 7..140 | 97 | -> | Plus |
2R | 17762129..17762288 | 141..300 | 100 | -> | Plus |
2R | 17762343..17762635 | 301..593 | 100 | -> | Plus |
2R | 17762693..17762899 | 594..800 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:23:16 Download gff for
BS05419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13648763..13648894 | 7..140 | 97 | -> | Plus |
arm_2R | 13649634..13649793 | 141..300 | 100 | -> | Plus |
arm_2R | 13649848..13650140 | 301..593 | 100 | -> | Plus |
arm_2R | 13650198..13650404 | 594..800 | 100 | | Plus |
BS05419.complete Sequence
2042 bp assembled on 2008-01-02
GenBank Submission: FJ635106
> BS05419.complete
GAAGTTATCAGTCGACATGCCAGCCAAACCAGTGAATCCCGATCTCCAGA
AGGAACGCAGCACGGCCACCTTCAATCCCCGGGAGTTCTCCGTTCTGTGG
GCCGGCGGCGAGGAGCGATTCAAGGAGAAGAAGGCCCTGGAGAAATTGTT
TTTGGAGGATCCAGCCCTTCAGGACGACTTGCCCATTTCCTATTTGTCAC
ACAAGGAGCTCTATGAGCACAGCTTGCGCAAAGCCTGCATCATAGGAGAG
AAGATCCGCAAGCTACGTGCTGATGGCGAGGATGGAGTGGATACTTACAA
TGCTCTGCTTGGTGGATCCTTGGGATCGGCTATTCTAAAGGAGGGCAATC
CGCTTGCGCTGCACTACGTGATGTTCGTGCCCACCATCATGGGCCAGGGA
ACGATGGATCAGCAGGTGGAATGGCTGAGCAAGGCCTGGGACTGTGAAAT
CATTGGCACCTATGCCCAAACGGAACTGGGACACGGAACCTTCCTGCGCG
GTCTGGAGACCAGGGCTGACTACGATGCCAGCACCCAGGAGTTTGTTATA
AACACTCCATCACTCAGTGCATACAAGTGGTGGCCCGGTGGATTGGGACA
CACTGCTAACCATGCGGTTGTGGTGGCACAACTCTACACCAAGGGCGAGT
TCCGTGGTCTGGCTCCTTTTATTGTCCAATTGAGGGATTCCGATACTCAC
CGTCCCATGCCCGGCATCGACATTGGAGATATTGGTACCAAGCTGGGCAT
GAAGGGTGTCAACAATGGCTATTTGGGACTGAAGAACGTACGGGTGCCTT
TAAACAACATGCTGATGAAGAACCAGCAAGTGCTGCCCGATGGCACATAT
GTGGCGCCGAAGAATAGCGTGCTTACCTACGGAACTATGATGTTTGTGCG
TTGTGCTCTTATCCGTGATACCGCTCAGAGCCTGGCAAAGGCATCCACTA
TTGCCACTAGGTATTCAGCTGTTCGCCGACAGAGTCCCATTGATCCCAAT
CAACCGGAGCCCCAAATCATGGACCATACCACGCAGCAGTTGAAGTTGTT
CCCCCAGATAGCTAAAGCCATCGTTTTCAAAACGACGGGTGATGGCATCT
GGAATATGTACAACGTGATATCTGGCGAGATTGAGCAGGGTAACTTGGAT
CGCCTGCCCGAAATGCATGCATTGTCCTGCTGCCTTAAGGCCATCTGTAG
TGCCGATGCCGCCGCCGGCGTGGAAACGTGTCGTCTGTCATGTGGCGGAC
ATGGCTACATGGACTGCTCCAACTTCCCCACGATATACGGCATGACCACG
GCCGTTTGCACCTATGAGGGCGAGAACACAGTGATGCTGCTGCAGACTGC
TCGCTATTTGGTGAAGGTTTATGGGCAGGCCTTGAATGGAGAGAAGCTGG
TGCCAACGGTTTCGTACATCAGTGATGCAATAAACCAAACCAAGTTTGTT
AACTTTGACGGATCATTGAGGTCTATTGTCAAGGCTTTCCAATTCGTTGC
CGCCAACAAAACCCGAATTGCCTATGAGCAGATTGAACTGCGCCGCAAGC
AAGGTTATGGTACCGAGGTGGCAGCTAATCTATGTGGCACCTTCCTAACA
GCAGCTGCAGATCTTCATGGACGCGCCTTCCTAGCGCAGACTGCCTATAC
GGAGCTTTTGGCCTTGTCGCGCGAGGTGTCCCCAGAACTAGCTGAAGTCC
TAAAGGTGGTGCTGGAGCTGTATCTGGTAGACGCCTGCCTCAACCGCATT
GGCGACTTCTTGCGGTTCATTGATCTCACTGATCAAGATGTCACGAAACT
GGAGGTTCGCCTGGAGAACTGCTTAAAACGATTCCGGCCGAATGCCGTCA
GCTTGGTGGACAGCTTTGATCTTCACGATCGCGTGCTAGATTCCGCATTG
GGTGCCTATGATGGAAATGTTTACGAACACATCTTCGAGTCTACGAAGAA
GAACCCGTTGAACAAGGAGCCAGTCAACGGAGCATTCCACAAGTACTTGA
AGCCATTCATGAAGGCTCACCTCTAGAAGCTTTCTAGACCAT
BS05419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5009-RA | 2010 | CG5009-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
CG4586-RA | 2034 | CG4586-PA | 454..591 | 455..592 | 255 | 79 | Plus |
Acox57D-p-RB | 2034 | CG9707-PB | 460..512 | 455..507 | 205 | 92.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5009-RA | 2506 | CG5009-RA | 327..2337 | 17..2027 | 10055 | 100 | Plus |
CG4586-RA | 2240 | CG4586-RA | 554..691 | 455..592 | 255 | 79 | Plus |
Acox57D-p-RB | 2235 | CG9707-RB | 516..568 | 455..507 | 205 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17763047..17763664 | 889..1506 | 3090 | 100 | Plus |
2R | 25286936 | 2R | 17762693..17762988 | 594..889 | 1480 | 100 | Plus |
2R | 25286936 | 2R | 17762336..17762635 | 294..593 | 1470 | 99.3 | Plus |
2R | 25286936 | 2R | 17764110..17764372 | 1765..2027 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 17762128..17762288 | 140..300 | 805 | 100 | Plus |
2R | 25286936 | 2R | 17763899..17764051 | 1613..1765 | 765 | 100 | Plus |
2R | 25286936 | 2R | 17761266..17761389 | 17..140 | 620 | 100 | Plus |
2R | 25286936 | 2R | 17763730..17763835 | 1507..1612 | 530 | 100 | Plus |
X | 23542271 | X | 6970471..6970608 | 455..592 | 255 | 79 | Plus |
2R | 25286936 | 2R | 21387296..21387348 | 455..507 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:04:07 has no hits.
BS05419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:49 Download gff for
BS05419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 1..2010 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:33 Download gff for
BS05419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 334..2343 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:03 Download gff for
BS05419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 327..2336 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:49 Download gff for
BS05419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 326..2344 | 7..2027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:08 Download gff for
BS05419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5009-RA | 327..2336 | 17..2026 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:08 Download gff for
BS05419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17762343..17762635 | 301..593 | 100 | -> | Plus |
2R | 17762693..17762988 | 594..889 | 100 | -> | Plus |
2R | 17761266..17761389 | 17..140 | 100 | -> | Plus |
2R | 17762129..17762288 | 141..300 | 100 | -> | Plus |
2R | 17763048..17763664 | 890..1506 | 100 | -> | Plus |
2R | 17763730..17763835 | 1507..1612 | 100 | -> | Plus |
2R | 17763899..17764051 | 1613..1765 | 100 | -> | Plus |
2R | 17764111..17764371 | 1766..2026 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:03 Download gff for
BS05419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13650198..13650493 | 594..889 | 100 | -> | Plus |
arm_2R | 13648771..13648894 | 17..140 | 100 | -> | Plus |
arm_2R | 13649634..13649793 | 141..300 | 100 | -> | Plus |
arm_2R | 13649848..13650140 | 301..593 | 100 | -> | Plus |
arm_2R | 13650553..13651169 | 890..1506 | 100 | -> | Plus |
arm_2R | 13651235..13651340 | 1507..1612 | 100 | -> | Plus |
arm_2R | 13651404..13651556 | 1613..1765 | 100 | -> | Plus |
arm_2R | 13651616..13651876 | 1766..2026 | 100 | | Plus |
BS05419.pep Sequence
Translation from 16 to 2025
> BS05419.pep
MPAKPVNPDLQKERSTATFNPREFSVLWAGGEERFKEKKALEKLFLEDPA
LQDDLPISYLSHKELYEHSLRKACIIGEKIRKLRADGEDGVDTYNALLGG
SLGSAILKEGNPLALHYVMFVPTIMGQGTMDQQVEWLSKAWDCEIIGTYA
QTELGHGTFLRGLETRADYDASTQEFVINTPSLSAYKWWPGGLGHTANHA
VVVAQLYTKGEFRGLAPFIVQLRDSDTHRPMPGIDIGDIGTKLGMKGVNN
GYLGLKNVRVPLNNMLMKNQQVLPDGTYVAPKNSVLTYGTMMFVRCALIR
DTAQSLAKASTIATRYSAVRRQSPIDPNQPEPQIMDHTTQQLKLFPQIAK
AIVFKTTGDGIWNMYNVISGEIEQGNLDRLPEMHALSCCLKAICSADAAA
GVETCRLSCGGHGYMDCSNFPTIYGMTTAVCTYEGENTVMLLQTARYLVK
VYGQALNGEKLVPTVSYISDAINQTKFVNFDGSLRSIVKAFQFVAANKTR
IAYEQIELRRKQGYGTEVAANLCGTFLTAAADLHGRAFLAQTAYTELLAL
SREVSPELAEVLKVVLELYLVDACLNRIGDFLRFIDLTDQDVTKLEVRLE
NCLKRFRPNAVSLVDSFDLHDRVLDSALGAYDGNVYEHIFESTKKNPLNK
EPVNGAFHKYLKPFMKAHL*
BS05419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5009-PA | 669 | CG5009-PA | 1..669 | 1..669 | 3491 | 100 | Plus |
Acox57D-p-PB | 677 | CG9707-PB | 12..677 | 6..669 | 1703 | 49.5 | Plus |
Acox57D-p-PA | 677 | CG9707-PA | 12..677 | 6..669 | 1703 | 49.5 | Plus |
Acox57D-d-PA | 677 | CG9709-PA | 12..677 | 6..669 | 1683 | 49.7 | Plus |
CG4586-PA | 677 | CG4586-PA | 3..677 | 6..669 | 1588 | 45.1 | Plus |