Clone BS05419 Report

Search the DGRC for BS05419

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG5009-RA
Protein status:BS05419.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05419.3prime Sequence

1020 bp (760 high quality bases) assembled on 2005-12-02

> BS05419.3prime
ATGGTCTAGAAAGCTTCTAGAGGTGAGCCTTCATGAATGGCTTCAAGTAC
TTGTGGAATGCTCCGTTGACTGGCTCCTTGTTCAACGGGTTCTTCTTCGT
AGACTCGAAGATGTGTTCGTAAACATTTCCATCATAGGCACCCAATGCGG
AATCTAGCACGCGATCGTGAAGATCAAAGCTGTCCACCAAGCTGACGGCA
TTCGGCCGGAATCGTTTTAAGCAGTTCTCCAGGCGAACCTCCAGTTTCGT
GACATCTTGATCAGTGAGATCAATGAACCGCAAGAAGTCGCCAATGCGGT
TGAGGCAGGCGTCTACCAGATACAGCTCCAGCACCACCTTTAGGACTTCA
GCTAGTTCTGGGGACACCTCGCGCGACAAGGCCAAAAGCTCCGTATAGGC
AGTCTGCGCTAGGAAGGCGCGTCCATGAAGATCTGCAGCTGCTGTTAGGA
AGGTGCCACATAGATTAGCTGCCACCTCGGTACCATAACCTTGCTTGCGG
CGCAGTTCAATCTGCTCATAGGCAATTCGGGTTTTGTTGGCGGCAACGAA
TTGGAAAGCCTTGACAATAGACCTCAATGATCCGTCAAAGTTAACAAACT
TGGTTTGGTTTATTGCATCACTGATGTACGAAACCGTTGGCACCAGCTTC
TCTCCATTCAAGGCCTGCCCATAAACCTTCACCAAATAGCGAGCAGTCTG
CAGCAGCATCACTGTGTTCTCGCCCTCATAGGTGCAAACGGCCGTGGTCA
TGCCGTATATCGTGGGGGAGTTGGAGCAGTCCATGTAGCCATGTCCGCCA
CATGACAGACGACACGTTTCCACGCCGGCGGCGGCATCGGCACTACAGAT
GGCCTTAAGGCAGCAGGACAATGCATGCATTTCGGGCAGGCGATCCAAGT
TACCCTGCTCAATCTCGCCAGATATCACGTTGTACATATTCCAGATGGCA
TCACCCGTCGTTTTTGAAACGATGGCTTTACCTATCTGGGGGAACACTTC
AACTGCTGGGTGGGAATGGC

BS05419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5009-PA 2010 CG5009-RA 1031..2010 996..17 4775 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5009-RA 2506 CG5009-RA 1339..2337 1013..16 4880 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17763187..17763664 1013..537 2250 98.5 Minus
2R 25286936 2R 17764110..17764372 278..16 1315 100 Minus
2R 25286936 2R 17763899..17764051 430..278 765 100 Minus
2R 25286936 2R 17763730..17763835 536..431 530 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:49:15 has no hits.

BS05419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:41 Download gff for BS05419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5009-PA 1006..2010 17..1020 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:57 Download gff for BS05419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5009-PA 1006..2010 17..1020 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:03:01 Download gff for BS05419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 1332..2337 16..1020 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:37 Download gff for BS05419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 1332..2337 16..1020 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:37 Download gff for BS05419.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17763899..17764051 278..430 100 -> Minus
2R 17764111..17764372 16..277 100   Minus
2R 17763180..17763664 537..1020 97 -> Minus
2R 17763730..17763835 431..536 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:03:01 Download gff for BS05419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13650685..13651169 537..1020 97 -> Minus
arm_2R 13651235..13651340 431..536 100 -> Minus
arm_2R 13651404..13651556 278..430 100 -> Minus
arm_2R 13651616..13651877 16..277 100   Minus

BS05419.5prime Sequence

800 bp (769 high quality bases) assembled on 2005-12-02

> BS05419.5prime
GAAGTTATCAGTCGACATGCCAGCCAAACCAGTGAATCCCGATCTCCAGA
AGGAACGCAGCACGGCCACCTTCAATCCCCGGGAGTTCTCCGTTCTGTGG
GCCGGCGGCGAGGAGCGATTCAAGGAGAAGAAGGCCCTGGAGAAATTGTT
TTTGGAGGATCCAGCCCTTCAGGACGACTTGCCCATTTCCTATTTGTCAC
ACAAGGAGCTCTATGAGCACAGCTTGCGCAAAGCCTGCATCATAGGAGAG
AAGATCCGCAAGCTACGTGCTGATGGCGAGGATGGAGTGGATACTTACAA
TGCTCTGCTTGGTGGATCCTTGGGATCGGCTATTCTAAAGGAGGGCAATC
CGCTTGCGCTGCACTACGTGATGTTCGTGCCCACCATCATGGGCCAGGGA
ACGATGGATCAGCAGGTGGAATGGCTGAGCAAGGCCTGGGACTGTGAAAT
CATTGGCACCTATGCCCAAACGGAACTGGGACACGGAACCTTCCTGCGCG
GTCTGGAGACCAGGGCTGACTACGATGCCAGCACCCAGGAGTTTGTTATA
AACACTCCATCACTCAGTGCATACAAGTGGTGGCCCGGTGGATTGGGACA
CACTGCTAACCATGCGGTTGTGGTGGCACAACTCTACACCAAGGGCGAGT
TCCGTGGTCTGGCTCCTTTTATTGTCCAATTGAGGGATTCCGATACTCAC
CGTCCCATGCCCGGCATCGACATTGGAGATATTGGTACCAAGCTGGGCAT
GAAGGGTGTCAACAATGGCTATTTGGGACTGAAGAACGTACGGGTGCCTT

BS05419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5009-PA 2010 CG5009-RA 1..784 17..800 3920 100 Plus
CG9707-PA 2034 Acox57D-p-RA 460..512 455..507 165 92.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5009-RA 2506 CG5009-RA 327..1110 17..800 3920 100 Plus
CG4586-RA 2240 CG4586-RA 554..691 455..592 255 79 Plus
Acox57D-p-RB 2235 CG9707-RB 516..568 455..507 205 92.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17762336..17762635 294..593 1470 99.3 Plus
2R 25286936 2R 17762693..17762899 594..800 1035 100 Plus
2R 25286936 2R 17762128..17762288 140..300 805 100 Plus
2R 25286936 2R 17761266..17761389 17..140 620 100 Plus
X 23542271 X 6970471..6970608 455..592 255 79 Plus
2R 25286936 2R 21387296..21387348 455..507 205 92.5 Plus
Blast to na_te.dros performed on 2015-02-13 08:52:11 has no hits.

BS05419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:42 Download gff for BS05419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5009-PA 1..784 17..800 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:38:58 Download gff for BS05419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5009-PA 1..784 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:23:16 Download gff for BS05419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 319..1110 7..800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:48:40 Download gff for BS05419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 319..1110 7..800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:48:40 Download gff for BS05419.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17761258..17761389 7..140 97 -> Plus
2R 17762129..17762288 141..300 100 -> Plus
2R 17762343..17762635 301..593 100 -> Plus
2R 17762693..17762899 594..800 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:23:16 Download gff for BS05419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13648763..13648894 7..140 97 -> Plus
arm_2R 13649634..13649793 141..300 100 -> Plus
arm_2R 13649848..13650140 301..593 100 -> Plus
arm_2R 13650198..13650404 594..800 100   Plus

BS05419.complete Sequence

2042 bp assembled on 2008-01-02

GenBank Submission: FJ635106

> BS05419.complete
GAAGTTATCAGTCGACATGCCAGCCAAACCAGTGAATCCCGATCTCCAGA
AGGAACGCAGCACGGCCACCTTCAATCCCCGGGAGTTCTCCGTTCTGTGG
GCCGGCGGCGAGGAGCGATTCAAGGAGAAGAAGGCCCTGGAGAAATTGTT
TTTGGAGGATCCAGCCCTTCAGGACGACTTGCCCATTTCCTATTTGTCAC
ACAAGGAGCTCTATGAGCACAGCTTGCGCAAAGCCTGCATCATAGGAGAG
AAGATCCGCAAGCTACGTGCTGATGGCGAGGATGGAGTGGATACTTACAA
TGCTCTGCTTGGTGGATCCTTGGGATCGGCTATTCTAAAGGAGGGCAATC
CGCTTGCGCTGCACTACGTGATGTTCGTGCCCACCATCATGGGCCAGGGA
ACGATGGATCAGCAGGTGGAATGGCTGAGCAAGGCCTGGGACTGTGAAAT
CATTGGCACCTATGCCCAAACGGAACTGGGACACGGAACCTTCCTGCGCG
GTCTGGAGACCAGGGCTGACTACGATGCCAGCACCCAGGAGTTTGTTATA
AACACTCCATCACTCAGTGCATACAAGTGGTGGCCCGGTGGATTGGGACA
CACTGCTAACCATGCGGTTGTGGTGGCACAACTCTACACCAAGGGCGAGT
TCCGTGGTCTGGCTCCTTTTATTGTCCAATTGAGGGATTCCGATACTCAC
CGTCCCATGCCCGGCATCGACATTGGAGATATTGGTACCAAGCTGGGCAT
GAAGGGTGTCAACAATGGCTATTTGGGACTGAAGAACGTACGGGTGCCTT
TAAACAACATGCTGATGAAGAACCAGCAAGTGCTGCCCGATGGCACATAT
GTGGCGCCGAAGAATAGCGTGCTTACCTACGGAACTATGATGTTTGTGCG
TTGTGCTCTTATCCGTGATACCGCTCAGAGCCTGGCAAAGGCATCCACTA
TTGCCACTAGGTATTCAGCTGTTCGCCGACAGAGTCCCATTGATCCCAAT
CAACCGGAGCCCCAAATCATGGACCATACCACGCAGCAGTTGAAGTTGTT
CCCCCAGATAGCTAAAGCCATCGTTTTCAAAACGACGGGTGATGGCATCT
GGAATATGTACAACGTGATATCTGGCGAGATTGAGCAGGGTAACTTGGAT
CGCCTGCCCGAAATGCATGCATTGTCCTGCTGCCTTAAGGCCATCTGTAG
TGCCGATGCCGCCGCCGGCGTGGAAACGTGTCGTCTGTCATGTGGCGGAC
ATGGCTACATGGACTGCTCCAACTTCCCCACGATATACGGCATGACCACG
GCCGTTTGCACCTATGAGGGCGAGAACACAGTGATGCTGCTGCAGACTGC
TCGCTATTTGGTGAAGGTTTATGGGCAGGCCTTGAATGGAGAGAAGCTGG
TGCCAACGGTTTCGTACATCAGTGATGCAATAAACCAAACCAAGTTTGTT
AACTTTGACGGATCATTGAGGTCTATTGTCAAGGCTTTCCAATTCGTTGC
CGCCAACAAAACCCGAATTGCCTATGAGCAGATTGAACTGCGCCGCAAGC
AAGGTTATGGTACCGAGGTGGCAGCTAATCTATGTGGCACCTTCCTAACA
GCAGCTGCAGATCTTCATGGACGCGCCTTCCTAGCGCAGACTGCCTATAC
GGAGCTTTTGGCCTTGTCGCGCGAGGTGTCCCCAGAACTAGCTGAAGTCC
TAAAGGTGGTGCTGGAGCTGTATCTGGTAGACGCCTGCCTCAACCGCATT
GGCGACTTCTTGCGGTTCATTGATCTCACTGATCAAGATGTCACGAAACT
GGAGGTTCGCCTGGAGAACTGCTTAAAACGATTCCGGCCGAATGCCGTCA
GCTTGGTGGACAGCTTTGATCTTCACGATCGCGTGCTAGATTCCGCATTG
GGTGCCTATGATGGAAATGTTTACGAACACATCTTCGAGTCTACGAAGAA
GAACCCGTTGAACAAGGAGCCAGTCAACGGAGCATTCCACAAGTACTTGA
AGCCATTCATGAAGGCTCACCTCTAGAAGCTTTCTAGACCAT

BS05419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5009-RA 2010 CG5009-PA 1..2010 17..2026 10050 100 Plus
CG4586-RA 2034 CG4586-PA 454..591 455..592 255 79 Plus
Acox57D-p-RB 2034 CG9707-PB 460..512 455..507 205 92.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5009-RA 2506 CG5009-RA 327..2337 17..2027 10055 100 Plus
CG4586-RA 2240 CG4586-RA 554..691 455..592 255 79 Plus
Acox57D-p-RB 2235 CG9707-RB 516..568 455..507 205 92.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17763047..17763664 889..1506 3090 100 Plus
2R 25286936 2R 17762693..17762988 594..889 1480 100 Plus
2R 25286936 2R 17762336..17762635 294..593 1470 99.3 Plus
2R 25286936 2R 17764110..17764372 1765..2027 1315 100 Plus
2R 25286936 2R 17762128..17762288 140..300 805 100 Plus
2R 25286936 2R 17763899..17764051 1613..1765 765 100 Plus
2R 25286936 2R 17761266..17761389 17..140 620 100 Plus
2R 25286936 2R 17763730..17763835 1507..1612 530 100 Plus
X 23542271 X 6970471..6970608 455..592 255 79 Plus
2R 25286936 2R 21387296..21387348 455..507 205 92.5 Plus
Blast to na_te.dros performed on 2014-11-27 07:04:07 has no hits.

BS05419.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:49 Download gff for BS05419.complete
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 1..2010 17..2026 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:33 Download gff for BS05419.complete
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 334..2343 17..2026 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:03 Download gff for BS05419.complete
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 327..2336 17..2026 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:49 Download gff for BS05419.complete
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 326..2344 7..2027 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:08 Download gff for BS05419.complete
Subject Subject Range Query Range Percent Splice Strand
CG5009-RA 327..2336 17..2026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:08 Download gff for BS05419.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17762343..17762635 301..593 100 -> Plus
2R 17762693..17762988 594..889 100 -> Plus
2R 17761266..17761389 17..140 100 -> Plus
2R 17762129..17762288 141..300 100 -> Plus
2R 17763048..17763664 890..1506 100 -> Plus
2R 17763730..17763835 1507..1612 100 -> Plus
2R 17763899..17764051 1613..1765 100 -> Plus
2R 17764111..17764371 1766..2026 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:03 Download gff for BS05419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13650198..13650493 594..889 100 -> Plus
arm_2R 13648771..13648894 17..140 100 -> Plus
arm_2R 13649634..13649793 141..300 100 -> Plus
arm_2R 13649848..13650140 301..593 100 -> Plus
arm_2R 13650553..13651169 890..1506 100 -> Plus
arm_2R 13651235..13651340 1507..1612 100 -> Plus
arm_2R 13651404..13651556 1613..1765 100 -> Plus
arm_2R 13651616..13651876 1766..2026 100   Plus

BS05419.pep Sequence

Translation from 16 to 2025

> BS05419.pep
MPAKPVNPDLQKERSTATFNPREFSVLWAGGEERFKEKKALEKLFLEDPA
LQDDLPISYLSHKELYEHSLRKACIIGEKIRKLRADGEDGVDTYNALLGG
SLGSAILKEGNPLALHYVMFVPTIMGQGTMDQQVEWLSKAWDCEIIGTYA
QTELGHGTFLRGLETRADYDASTQEFVINTPSLSAYKWWPGGLGHTANHA
VVVAQLYTKGEFRGLAPFIVQLRDSDTHRPMPGIDIGDIGTKLGMKGVNN
GYLGLKNVRVPLNNMLMKNQQVLPDGTYVAPKNSVLTYGTMMFVRCALIR
DTAQSLAKASTIATRYSAVRRQSPIDPNQPEPQIMDHTTQQLKLFPQIAK
AIVFKTTGDGIWNMYNVISGEIEQGNLDRLPEMHALSCCLKAICSADAAA
GVETCRLSCGGHGYMDCSNFPTIYGMTTAVCTYEGENTVMLLQTARYLVK
VYGQALNGEKLVPTVSYISDAINQTKFVNFDGSLRSIVKAFQFVAANKTR
IAYEQIELRRKQGYGTEVAANLCGTFLTAAADLHGRAFLAQTAYTELLAL
SREVSPELAEVLKVVLELYLVDACLNRIGDFLRFIDLTDQDVTKLEVRLE
NCLKRFRPNAVSLVDSFDLHDRVLDSALGAYDGNVYEHIFESTKKNPLNK
EPVNGAFHKYLKPFMKAHL*

BS05419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5009-PA 669 CG5009-PA 1..669 1..669 3491 100 Plus
Acox57D-p-PB 677 CG9707-PB 12..677 6..669 1703 49.5 Plus
Acox57D-p-PA 677 CG9707-PA 12..677 6..669 1703 49.5 Plus
Acox57D-d-PA 677 CG9709-PA 12..677 6..669 1683 49.7 Plus
CG4586-PA 677 CG4586-PA 3..677 6..669 1588 45.1 Plus