Clone Sequence Records
BS05420.complete Sequence
2324 bp assembled on 2009-12-07
GenBank Submission: KX795100
> BS05420.complete
GAAGTTATCAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGC
GTCGCCGTAACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATG
TTCGTGGTGCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAG
GACGAGTCCCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCA
CCACCATCAACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGC
GATTCGGGCGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCAC
CGTTTTGCGGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACG
AGTTCGCCTGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAG
GTCTCCATCAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTT
GAAGGACATCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCC
GACTGCCCAACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAG
ACCCTGGGCCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTG
GCCGCTGATCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGC
AGGAGCAGGTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATC
ATCGACTTTTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTAT
AGATCTGGACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAG
GATTCAATGAGACGCTGGTGACGGCATACTACAAGTATATGGTTGACATC
GCGGTTCTTTTCGGAGCAAATAGGGACTTGGCCAAGACGGAGCTGCTGTT
ATCTTTGGAGTTCGAGATGGCGCTGGCCAATATCTCCTGGCCCAACGAGA
AGCGACGCAACTCCTCTGAGCTGTACAATCTAAGAACTCCAGCGCAGCTC
CAGGCCGCCTACCCCTACGTGCAGTGGGTGGACTACATGAACGCCCTGCT
GCCGGAGGGACTGAACGTGGCCGAGGACGAGATGATCAACCTGTCGGTGC
CCAGCTTCTTCGAGGACCTTGGCAAGCTGCTGGCCAAGACGCCGAAGCGT
GTCATCGCCAACTATATGTTCTGGCGTATCCACGGCTTCTCCGTGGGATT
TCTGAGTGAGGAGTTCCGCAAGCGACAGCTGCAGTACGCCACAGCCCTTT
CGGGGCGCCAGGAACAGGAGGCTAGATGGAAGGAGTGCGTCGACATCGCC
ACCAGCAGTCTTGGCATTTCCGTGGGATCGCTCTACGTGGGCAAGCACTT
CCACAAGGATTCGAAGGCCAACGCCCTGGAGATGGTCAACGAAATCCGCA
ACGTGTTCAACGACATCCTGGACGAGGTCAACTGGATGGACGCCAAGACG
AAGAAGGAGGCCAAGCTAAAGCTGCACAGCATGGCCACCCACATCGGCTA
TCCGGACGAGATGCTCGACAACGAGAAGCTGGCCGCCTACTACGCCAAGC
TCGACATCGATCCCGACAAGTACTTCGAGTCGTTCCTGGGCATGAACATA
TTTGGCACGGATTACTCGTTCAACAAGCTTCGTTTGCCGGTCAACAAGAC
GGACTGGGTTCGCCACGCTCGTCCGGCGATCGTGAACGCGTTCTACTCGT
CCTTAGAGAACAGTATTCAATTCCCGGCCGGCATCCTGCAGGGGCACTTC
TTCAACGCCCAACGTCCGAAGTACATGAACTTTGGCGCCATTGGCTACGT
GATTGGTCACGAGATCACCCATGGTTTCGACGACCAGGGTCGCCAGTTCG
ACGTGAAGGGCAACCTGCGGGACTGGTGGCACCCGGACACCCAGAAGGCC
TATCTGGCCAAGGCGAAGTGCATCATTGAGCAGTACGGCAACTACACCGA
AAGGGCCACGGGATTGAACTTGAATGGCATCAACACCCAGGGGGAGAATA
TCGCCGACAATGGTGGCGTCAAGGAGTCATACATCGCCTACCGCAGATGG
GCTGAGAAGCACGGACCGGAAGCAAAGCTTCCGGGATTGGACTACACCCC
GGAGCAGATGTTCTGGGTGGCAGCCGGACAGACTTGGTGTGCTAAGTACC
GAAAAGAATCTCTCAAGATGCGTATTACTACCGGCGTGCATTCTCCATCC
GAGTTCCGAGTCCTCGGGTCGCTCAGCAACATGAAGGACTTCGCCAAGGA
CTTCCATTGTCCAGAGGGATCACCCATGAATCCGGTCCAAAAGTGCGAGG
TTTGGTAGAAGCTTTCTAGACCAT
BS05420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 2292 | CG9761-PC | 1..2292 | 17..2308 | 11460 | 100 | Plus |
Nep2-RA | 2292 | CG9761-PA | 1..2292 | 17..2308 | 11460 | 100 | Plus |
Nep2-RB | 2325 | CG9761-PB | 1..1292 | 17..1308 | 6460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 3103 | CG9761-RC | 315..2608 | 15..2308 | 11470 | 100 | Plus |
Nep2-RA | 2763 | CG9761-RA | 315..2608 | 15..2308 | 11470 | 100 | Plus |
Nep2-RB | 2796 | CG9761-RB | 315..1608 | 15..1308 | 6470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4723796..4724301 | 539..34 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 4720981..4721393 | 1718..1306 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 4722774..4723150 | 1308..932 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 4720465..4720715 | 1969..1719 | 1255 | 100 | Minus |
3R | 32079331 | 3R | 4723515..4723729 | 754..540 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 4720224..4720410 | 2156..1970 | 935 | 100 | Minus |
3R | 32079331 | 3R | 4723204..4723380 | 931..755 | 885 | 100 | Minus |
3R | 32079331 | 3R | 4719953..4720106 | 2308..2155 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:45 has no hits.
BS05420.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:36 Download gff for
BS05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 312..2603 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:57 Download gff for
BS05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 317..2608 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:13 Download gff for
BS05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 312..2603 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:24 Download gff for
BS05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 317..2608 | 17..2308 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:24 Download gff for
BS05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4723204..4723380 | 755..931 | 100 | <- | Minus |
3R | 4720465..4720715 | 1719..1969 | 100 | <- | Minus |
3R | 4723515..4723729 | 540..754 | 100 | <- | Minus |
3R | 4720981..4721390 | 1309..1718 | 100 | <- | Minus |
3R | 4719953..4720104 | 2157..2308 | 100 | <- | Minus |
3R | 4720224..4720410 | 1970..2156 | 100 | <- | Minus |
3R | 4722774..4723150 | 932..1308 | 100 | <- | Minus |
3R | 4723796..4724301 | 34..539 | 100 | <- | Minus |
3R | 4731546..4731562 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:57 Download gff for
BS05420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 545675..545826 | 2157..2308 | 100 | <- | Minus |
arm_3R | 545946..546132 | 1970..2156 | 100 | <- | Minus |
arm_3R | 546187..546437 | 1719..1969 | 100 | <- | Minus |
arm_3R | 546703..547112 | 1309..1718 | 100 | <- | Minus |
arm_3R | 548496..548872 | 932..1308 | 100 | <- | Minus |
arm_3R | 548926..549102 | 755..931 | 100 | <- | Minus |
arm_3R | 549237..549451 | 540..754 | 100 | <- | Minus |
arm_3R | 549518..550023 | 34..539 | 100 | <- | Minus |
arm_3R | 557268..557284 | 17..33 | 100 | | Minus |
BS05420.3prime Sequence
943 bp (783 high quality bases) assembled on 2005-12-02
> BS05420.3prime
ATGGTCTAGAAAGCTTCTACCAAACCTCGCACTTTTGGACCGGATTCATG
GGTGATCCCTCTGGACAATGGAAGTCCTTGGCGAAGTCCTTCATGTTGCT
GAGCGACCCGAGGACTCGGAACTCGGATGGAGAATGCACGCCGGTAGTAA
TACGCATCTTGAGAGATTCTTTTCGGTACTTAGCACACCAAGTCTGTCCG
GCTGCCACCCAGAACATCTGCTCCGGGGTGTAGTCCAATCCCGGAAGCTT
TGCTTCCGGTCCGTGCTTCTCAGCCCATCTGCGGTAGGCGATGTATGACT
CCTTGACGCCACCATTGTCGGCGATATTCTCCCCCTGGGTGTTGATGCCA
TTCAAGTTCAATCCCGTGGCCCTTTCGGTGTAGTTGCCGTACTGCTCAAT
GATGCACTTCGCCTTGGCCAGATAGGCCTTCTGGGTGTCCGGGTGCCACC
AGTCCCGCAGGTTGCCCTTCACGTCGAACTGGCGACCCTGGTCGTCGAAA
CCATGGGTGATCTCGTGACCAATCACGTAGCCAATGGCGCCAAAGTTCAT
GTACTTCGGACGTTGGGCGTTGAAGAAGTGCCCCTGCAGGATGCCGGCCG
GGAATTGAATACTGTTCTCTAAGGACGAGTAGAACGCGTTCACGATCGCC
GGACGAGCGTGGCGAACCCAGTCCGTCTTGTTGACCGGCAAACGAAGCTT
GTTGAACGAGTAATCCGTGCCAAATATGTTCATGCCCAGGAACGACTCGA
AGTACTTGTCGGGATCGATGTCGAGCTTGGCGTAGTAGGCGGCCAGCTTC
TCGTTGTCGAGCATCTCGTCCGGATAGCCGATGTGGGTGGCCATGCTGTG
CAGCTTTAGCTTGCCCTCCTTTCTCGTCTTGGCGTCCATCCAGTTGACCT
CGTCCAGGATGTCGTTGAACACGTTGCGGATTTCGTTGACCAT
BS05420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9761-PA | 2292 | Nep2-RA | 1366..2292 | 943..17 | 4560 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 3103 | CG9761-RC | 1682..2608 | 943..17 | 4590 | 99.7 | Minus |
Nep2-RB | 2796 | CG9761-RB | 1715..2641 | 943..17 | 4590 | 99.7 | Minus |
Nep2-RA | 2763 | CG9761-RA | 1682..2608 | 943..17 | 4590 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4720981..4721317 | 607..943 | 1640 | 99.1 | Plus |
3R | 32079331 | 3R | 4720465..4720715 | 356..606 | 1255 | 100 | Plus |
3R | 32079331 | 3R | 4720224..4720410 | 169..355 | 935 | 100 | Plus |
3R | 32079331 | 3R | 4719953..4720106 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:38:10 has no hits.
BS05420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:43 Download gff for
BS05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-PA | 1366..2292 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:00 Download gff for
BS05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9761-PA | 1366..2292 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:38 Download gff for
BS05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 1682..2616 | 8..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:54:41 Download gff for
BS05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 1682..2616 | 8..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:54:41 Download gff for
BS05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4719945..4720104 | 8..168 | 97 | <- | Plus |
3R | 4720224..4720410 | 169..355 | 100 | <- | Plus |
3R | 4720465..4720715 | 356..606 | 100 | <- | Plus |
3R | 4720981..4721317 | 607..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:38 Download gff for
BS05420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 545667..545826 | 8..168 | 97 | <- | Plus |
arm_3R | 545946..546132 | 169..355 | 100 | <- | Plus |
arm_3R | 546187..546437 | 356..606 | 100 | <- | Plus |
arm_3R | 546703..547039 | 607..943 | 99 | | Plus |
BS05420.5prime Sequence
849 bp (796 high quality bases) assembled on 2005-12-02
> BS05420.5prime
GAAGTTATCAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGC
GTCGCCGTAACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATG
TTCGTGGTGCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAG
GACGAGTCCCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCA
CCACCATCAACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGC
GATTCGGGCGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCAC
CGTTTTGCGGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACG
AGTTCGCCTGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAG
GTCTCCATCAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTT
GAAGGACATCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCC
GACTGCCCAACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAG
ACCCTGGGCCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTG
GCCGCTGATCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGC
AGGAGCAGGTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATC
ATCGACTTTTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTAT
AGATCTGGACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAA
GGATCAATGAGACGCTGGTGACGGCATACTACAAGTATATGGTTGACAT
BS05420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9761-PA | 2292 | Nep2-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
CG9761-PA | 2292 | Nep2-RA | 788..833 | 804..849 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 3103 | CG9761-RC | 315..1149 | 15..849 | 4130 | 99.8 | Plus |
Nep2-RB | 2796 | CG9761-RB | 315..1149 | 15..849 | 4130 | 99.8 | Plus |
Nep2-RA | 2763 | CG9761-RA | 315..1149 | 15..849 | 4130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4723796..4724301 | 539..34 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 4723515..4723729 | 754..540 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 4723286..4723380 | 849..755 | 430 | 96.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:44:03 has no hits.
BS05420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:44 Download gff for
BS05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:01 Download gff for
BS05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9761-PA | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:17 Download gff for
BS05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 307..1149 | 7..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:38 Download gff for
BS05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 307..1149 | 7..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:38 Download gff for
BS05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4723286..4723380 | 755..849 | 97 | <- | Minus |
3R | 4723515..4723729 | 540..754 | 100 | <- | Minus |
3R | 4723796..4724301 | 34..539 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:17 Download gff for
BS05420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 549008..549102 | 755..849 | 97 | <- | Minus |
arm_3R | 549237..549451 | 540..754 | 100 | <- | Minus |
arm_3R | 549518..550023 | 34..539 | 100 | <- | Minus |
BS05420.pep Sequence
Translation from 16 to 2307
> BS05420.pep
MQTVIQNPNWWRRRNKLEKSLLVSLGIMFVVLATGFGLWIGKVLRTSPPS
NPQATALHGDSTTINQVPTGTASKGKSGDSGDVCLTQECIHTASTVLRKM
KPEVEPCDNFYEFACGTYLEEENIPDDKVSISTFSVISDKLQEQLKDIIT
AERPETEPKHFRLPNLLYKACMNKTLIETLGPEPITRVAERLGGWPLIKG
DSWNADDSWTWQEQVKKFRTAGFSMDYIIDFSIGVDLQNSTKRLIDLDQS
SLALSREYLVKGFNETLVTAYYKYMVDIAVLFGANRDLAKTELLLSLEFE
MALANISWPNEKRRNSSELYNLRTPAQLQAAYPYVQWVDYMNALLPEGLN
VAEDEMINLSVPSFFEDLGKLLAKTPKRVIANYMFWRIHGFSVGFLSEEF
RKRQLQYATALSGRQEQEARWKECVDIATSSLGISVGSLYVGKHFHKDSK
ANALEMVNEIRNVFNDILDEVNWMDAKTKKEAKLKLHSMATHIGYPDEML
DNEKLAAYYAKLDIDPDKYFESFLGMNIFGTDYSFNKLRLPVNKTDWVRH
ARPAIVNAFYSSLENSIQFPAGILQGHFFNAQRPKYMNFGAIGYVIGHEI
THGFDDQGRQFDVKGNLRDWWHPDTQKAYLAKAKCIIEQYGNYTERATGL
NLNGINTQGENIADNGGVKESYIAYRRWAEKHGPEAKLPGLDYTPEQMFW
VAAGQTWCAKYRKESLKMRITTGVHSPSEFRVLGSLSNMKDFAKDFHCPE
GSPMNPVQKCEVW*
BS05420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-PC | 763 | CG9761-PC | 1..763 | 1..763 | 4059 | 100 | Plus |
Nep2-PA | 763 | CG9761-PA | 1..763 | 1..763 | 4059 | 100 | Plus |
Nep2-PB | 774 | CG9761-PB | 1..774 | 1..763 | 4037 | 98.6 | Plus |
Nep1-PD | 849 | CG5905-PD | 102..849 | 11..763 | 1357 | 37 | Plus |
Nep1-PC | 849 | CG5905-PC | 102..849 | 11..763 | 1357 | 37 | Plus |