Clone BS05420 Report

Search the DGRC for BS05420

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptNep2-RA
Protein status:BS05420.pep: full length peptide match
Sequenced Size:2324

Clone Sequence Records

BS05420.complete Sequence

2324 bp assembled on 2009-12-07

GenBank Submission: KX795100

> BS05420.complete
GAAGTTATCAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGC
GTCGCCGTAACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATG
TTCGTGGTGCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAG
GACGAGTCCCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCA
CCACCATCAACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGC
GATTCGGGCGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCAC
CGTTTTGCGGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACG
AGTTCGCCTGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAG
GTCTCCATCAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTT
GAAGGACATCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCC
GACTGCCCAACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAG
ACCCTGGGCCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTG
GCCGCTGATCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGC
AGGAGCAGGTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATC
ATCGACTTTTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTAT
AGATCTGGACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAG
GATTCAATGAGACGCTGGTGACGGCATACTACAAGTATATGGTTGACATC
GCGGTTCTTTTCGGAGCAAATAGGGACTTGGCCAAGACGGAGCTGCTGTT
ATCTTTGGAGTTCGAGATGGCGCTGGCCAATATCTCCTGGCCCAACGAGA
AGCGACGCAACTCCTCTGAGCTGTACAATCTAAGAACTCCAGCGCAGCTC
CAGGCCGCCTACCCCTACGTGCAGTGGGTGGACTACATGAACGCCCTGCT
GCCGGAGGGACTGAACGTGGCCGAGGACGAGATGATCAACCTGTCGGTGC
CCAGCTTCTTCGAGGACCTTGGCAAGCTGCTGGCCAAGACGCCGAAGCGT
GTCATCGCCAACTATATGTTCTGGCGTATCCACGGCTTCTCCGTGGGATT
TCTGAGTGAGGAGTTCCGCAAGCGACAGCTGCAGTACGCCACAGCCCTTT
CGGGGCGCCAGGAACAGGAGGCTAGATGGAAGGAGTGCGTCGACATCGCC
ACCAGCAGTCTTGGCATTTCCGTGGGATCGCTCTACGTGGGCAAGCACTT
CCACAAGGATTCGAAGGCCAACGCCCTGGAGATGGTCAACGAAATCCGCA
ACGTGTTCAACGACATCCTGGACGAGGTCAACTGGATGGACGCCAAGACG
AAGAAGGAGGCCAAGCTAAAGCTGCACAGCATGGCCACCCACATCGGCTA
TCCGGACGAGATGCTCGACAACGAGAAGCTGGCCGCCTACTACGCCAAGC
TCGACATCGATCCCGACAAGTACTTCGAGTCGTTCCTGGGCATGAACATA
TTTGGCACGGATTACTCGTTCAACAAGCTTCGTTTGCCGGTCAACAAGAC
GGACTGGGTTCGCCACGCTCGTCCGGCGATCGTGAACGCGTTCTACTCGT
CCTTAGAGAACAGTATTCAATTCCCGGCCGGCATCCTGCAGGGGCACTTC
TTCAACGCCCAACGTCCGAAGTACATGAACTTTGGCGCCATTGGCTACGT
GATTGGTCACGAGATCACCCATGGTTTCGACGACCAGGGTCGCCAGTTCG
ACGTGAAGGGCAACCTGCGGGACTGGTGGCACCCGGACACCCAGAAGGCC
TATCTGGCCAAGGCGAAGTGCATCATTGAGCAGTACGGCAACTACACCGA
AAGGGCCACGGGATTGAACTTGAATGGCATCAACACCCAGGGGGAGAATA
TCGCCGACAATGGTGGCGTCAAGGAGTCATACATCGCCTACCGCAGATGG
GCTGAGAAGCACGGACCGGAAGCAAAGCTTCCGGGATTGGACTACACCCC
GGAGCAGATGTTCTGGGTGGCAGCCGGACAGACTTGGTGTGCTAAGTACC
GAAAAGAATCTCTCAAGATGCGTATTACTACCGGCGTGCATTCTCCATCC
GAGTTCCGAGTCCTCGGGTCGCTCAGCAACATGAAGGACTTCGCCAAGGA
CTTCCATTGTCCAGAGGGATCACCCATGAATCCGGTCCAAAAGTGCGAGG
TTTGGTAGAAGCTTTCTAGACCAT

BS05420.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 2292 CG9761-PC 1..2292 17..2308 11460 100 Plus
Nep2-RA 2292 CG9761-PA 1..2292 17..2308 11460 100 Plus
Nep2-RB 2325 CG9761-PB 1..1292 17..1308 6460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 3103 CG9761-RC 315..2608 15..2308 11470 100 Plus
Nep2-RA 2763 CG9761-RA 315..2608 15..2308 11470 100 Plus
Nep2-RB 2796 CG9761-RB 315..1608 15..1308 6470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4723796..4724301 539..34 2530 100 Minus
3R 32079331 3R 4720981..4721393 1718..1306 2065 100 Minus
3R 32079331 3R 4722774..4723150 1308..932 1885 100 Minus
3R 32079331 3R 4720465..4720715 1969..1719 1255 100 Minus
3R 32079331 3R 4723515..4723729 754..540 1075 100 Minus
3R 32079331 3R 4720224..4720410 2156..1970 935 100 Minus
3R 32079331 3R 4723204..4723380 931..755 885 100 Minus
3R 32079331 3R 4719953..4720106 2308..2155 770 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:20:45 has no hits.

BS05420.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:36 Download gff for BS05420.complete
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 312..2603 17..2308 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:57 Download gff for BS05420.complete
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 317..2608 17..2308 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:13 Download gff for BS05420.complete
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 312..2603 17..2308 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:24 Download gff for BS05420.complete
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 317..2608 17..2308 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:24 Download gff for BS05420.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4723204..4723380 755..931 100 <- Minus
3R 4720465..4720715 1719..1969 100 <- Minus
3R 4723515..4723729 540..754 100 <- Minus
3R 4720981..4721390 1309..1718 100 <- Minus
3R 4719953..4720104 2157..2308 100 <- Minus
3R 4720224..4720410 1970..2156 100 <- Minus
3R 4722774..4723150 932..1308 100 <- Minus
3R 4723796..4724301 34..539 100 <- Minus
3R 4731546..4731562 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:57 Download gff for BS05420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 545675..545826 2157..2308 100 <- Minus
arm_3R 545946..546132 1970..2156 100 <- Minus
arm_3R 546187..546437 1719..1969 100 <- Minus
arm_3R 546703..547112 1309..1718 100 <- Minus
arm_3R 548496..548872 932..1308 100 <- Minus
arm_3R 548926..549102 755..931 100 <- Minus
arm_3R 549237..549451 540..754 100 <- Minus
arm_3R 549518..550023 34..539 100 <- Minus
arm_3R 557268..557284 17..33 100   Minus

BS05420.3prime Sequence

943 bp (783 high quality bases) assembled on 2005-12-02

> BS05420.3prime
ATGGTCTAGAAAGCTTCTACCAAACCTCGCACTTTTGGACCGGATTCATG
GGTGATCCCTCTGGACAATGGAAGTCCTTGGCGAAGTCCTTCATGTTGCT
GAGCGACCCGAGGACTCGGAACTCGGATGGAGAATGCACGCCGGTAGTAA
TACGCATCTTGAGAGATTCTTTTCGGTACTTAGCACACCAAGTCTGTCCG
GCTGCCACCCAGAACATCTGCTCCGGGGTGTAGTCCAATCCCGGAAGCTT
TGCTTCCGGTCCGTGCTTCTCAGCCCATCTGCGGTAGGCGATGTATGACT
CCTTGACGCCACCATTGTCGGCGATATTCTCCCCCTGGGTGTTGATGCCA
TTCAAGTTCAATCCCGTGGCCCTTTCGGTGTAGTTGCCGTACTGCTCAAT
GATGCACTTCGCCTTGGCCAGATAGGCCTTCTGGGTGTCCGGGTGCCACC
AGTCCCGCAGGTTGCCCTTCACGTCGAACTGGCGACCCTGGTCGTCGAAA
CCATGGGTGATCTCGTGACCAATCACGTAGCCAATGGCGCCAAAGTTCAT
GTACTTCGGACGTTGGGCGTTGAAGAAGTGCCCCTGCAGGATGCCGGCCG
GGAATTGAATACTGTTCTCTAAGGACGAGTAGAACGCGTTCACGATCGCC
GGACGAGCGTGGCGAACCCAGTCCGTCTTGTTGACCGGCAAACGAAGCTT
GTTGAACGAGTAATCCGTGCCAAATATGTTCATGCCCAGGAACGACTCGA
AGTACTTGTCGGGATCGATGTCGAGCTTGGCGTAGTAGGCGGCCAGCTTC
TCGTTGTCGAGCATCTCGTCCGGATAGCCGATGTGGGTGGCCATGCTGTG
CAGCTTTAGCTTGCCCTCCTTTCTCGTCTTGGCGTCCATCCAGTTGACCT
CGTCCAGGATGTCGTTGAACACGTTGCGGATTTCGTTGACCAT

BS05420.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9761-PA 2292 Nep2-RA 1366..2292 943..17 4560 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 3103 CG9761-RC 1682..2608 943..17 4590 99.7 Minus
Nep2-RB 2796 CG9761-RB 1715..2641 943..17 4590 99.7 Minus
Nep2-RA 2763 CG9761-RA 1682..2608 943..17 4590 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4720981..4721317 607..943 1640 99.1 Plus
3R 32079331 3R 4720465..4720715 356..606 1255 100 Plus
3R 32079331 3R 4720224..4720410 169..355 935 100 Plus
3R 32079331 3R 4719953..4720106 17..170 770 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:38:10 has no hits.

BS05420.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:43 Download gff for BS05420.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-PA 1366..2292 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:00 Download gff for BS05420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9761-PA 1366..2292 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:38 Download gff for BS05420.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 1682..2616 8..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:54:41 Download gff for BS05420.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 1682..2616 8..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:54:41 Download gff for BS05420.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4719945..4720104 8..168 97 <- Plus
3R 4720224..4720410 169..355 100 <- Plus
3R 4720465..4720715 356..606 100 <- Plus
3R 4720981..4721317 607..943 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:38 Download gff for BS05420.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 545667..545826 8..168 97 <- Plus
arm_3R 545946..546132 169..355 100 <- Plus
arm_3R 546187..546437 356..606 100 <- Plus
arm_3R 546703..547039 607..943 99   Plus

BS05420.5prime Sequence

849 bp (796 high quality bases) assembled on 2005-12-02

> BS05420.5prime
GAAGTTATCAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGC
GTCGCCGTAACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATG
TTCGTGGTGCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAG
GACGAGTCCCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCA
CCACCATCAACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGC
GATTCGGGCGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCAC
CGTTTTGCGGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACG
AGTTCGCCTGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAG
GTCTCCATCAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTT
GAAGGACATCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCC
GACTGCCCAACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAG
ACCCTGGGCCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTG
GCCGCTGATCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGC
AGGAGCAGGTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATC
ATCGACTTTTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTAT
AGATCTGGACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAA
GGATCAATGAGACGCTGGTGACGGCATACTACAAGTATATGGTTGACAT

BS05420.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9761-PA 2292 Nep2-RA 1..783 17..799 3915 100 Plus
CG9761-PA 2292 Nep2-RA 788..833 804..849 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 3103 CG9761-RC 315..1149 15..849 4130 99.8 Plus
Nep2-RB 2796 CG9761-RB 315..1149 15..849 4130 99.8 Plus
Nep2-RA 2763 CG9761-RA 315..1149 15..849 4130 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4723796..4724301 539..34 2530 100 Minus
3R 32079331 3R 4723515..4723729 754..540 1075 100 Minus
3R 32079331 3R 4723286..4723380 849..755 430 96.8 Minus
Blast to na_te.dros performed on 2015-02-13 01:44:03 has no hits.

BS05420.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:44 Download gff for BS05420.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-PA 1..833 17..849 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:01 Download gff for BS05420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9761-PA 1..833 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:17 Download gff for BS05420.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 307..1149 7..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:38 Download gff for BS05420.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 307..1149 7..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:38 Download gff for BS05420.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4723286..4723380 755..849 97 <- Minus
3R 4723515..4723729 540..754 100 <- Minus
3R 4723796..4724301 34..539 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:17 Download gff for BS05420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 549008..549102 755..849 97 <- Minus
arm_3R 549237..549451 540..754 100 <- Minus
arm_3R 549518..550023 34..539 100 <- Minus

BS05420.pep Sequence

Translation from 16 to 2307

> BS05420.pep
MQTVIQNPNWWRRRNKLEKSLLVSLGIMFVVLATGFGLWIGKVLRTSPPS
NPQATALHGDSTTINQVPTGTASKGKSGDSGDVCLTQECIHTASTVLRKM
KPEVEPCDNFYEFACGTYLEEENIPDDKVSISTFSVISDKLQEQLKDIIT
AERPETEPKHFRLPNLLYKACMNKTLIETLGPEPITRVAERLGGWPLIKG
DSWNADDSWTWQEQVKKFRTAGFSMDYIIDFSIGVDLQNSTKRLIDLDQS
SLALSREYLVKGFNETLVTAYYKYMVDIAVLFGANRDLAKTELLLSLEFE
MALANISWPNEKRRNSSELYNLRTPAQLQAAYPYVQWVDYMNALLPEGLN
VAEDEMINLSVPSFFEDLGKLLAKTPKRVIANYMFWRIHGFSVGFLSEEF
RKRQLQYATALSGRQEQEARWKECVDIATSSLGISVGSLYVGKHFHKDSK
ANALEMVNEIRNVFNDILDEVNWMDAKTKKEAKLKLHSMATHIGYPDEML
DNEKLAAYYAKLDIDPDKYFESFLGMNIFGTDYSFNKLRLPVNKTDWVRH
ARPAIVNAFYSSLENSIQFPAGILQGHFFNAQRPKYMNFGAIGYVIGHEI
THGFDDQGRQFDVKGNLRDWWHPDTQKAYLAKAKCIIEQYGNYTERATGL
NLNGINTQGENIADNGGVKESYIAYRRWAEKHGPEAKLPGLDYTPEQMFW
VAAGQTWCAKYRKESLKMRITTGVHSPSEFRVLGSLSNMKDFAKDFHCPE
GSPMNPVQKCEVW*

BS05420.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-PC 763 CG9761-PC 1..763 1..763 4059 100 Plus
Nep2-PA 763 CG9761-PA 1..763 1..763 4059 100 Plus
Nep2-PB 774 CG9761-PB 1..774 1..763 4037 98.6 Plus
Nep1-PD 849 CG5905-PD 102..849 11..763 1357 37 Plus
Nep1-PC 849 CG5905-PC 102..849 11..763 1357 37 Plus