Clone Sequence Records
BS05421.3prime Sequence
961 bp (900 high quality bases) assembled on 2005-12-02
> BS05421.3prime
ATGGTCTAGAAAGCTTTCAGAACATGATCGGCTTGTCCTTGCACTGATCT
ATTACGTATCCCGTAAAGCGCTTCAGAAACTTGGGATACTCGCGCTTGTA
GACGGCTCTCAGAGCACTCGCTGGCGCCCAGCCTCCAGGATTAACAACAG
AGCAGTAGGTTATTTTGCAGGTTAGATCGTTGCGATTTAGGGGCTGTCCC
TTCACATAACCCTCGGGCAAATGAGTTTGGCAGGCCAGGATGACGGTCAG
GAAGATCCGTACGCATTTTCCATTCTTTGACTCCTGCTTGGCGTACTCCG
TCGAGTTGTTGCACACCACCCACATGTCCCGGGCGCCCGGCTCCAGATTG
TCTGTGATCTTGCGCATGTGCGACCAAAATTGCGCATCACGCTGGCTCGC
CGGCCATATCCGCTTATGGGTTTGCAGGAAAAGCAGGGTGTCCGCCGAGA
TTTTTTCCAGGATGGTGCAGTCCTCCAAAGTGGTCTCCCAGTCATTTCGG
AACTCGGGCATGAAGAAGTAATGGCACATTTCCCTCGCCGTCACGCCCTG
CACCGTATGATAGGCCTTCAAGGGATCCATGACCAGCCCGTTGACCTCCT
CCTCGCGTTTGTACATTTTGATCTCCCCCTCGTCGGCAAAGATTTGCCAG
CCGTTGCCGTCTTGGCCAACGCCCTCGCGTGCGTAATGCAGTTGCTCCTT
GCACACGCGATCGATCTCCGGCCACAGGGCATGGCTGGTGGCCTCCGCAC
CCGTGCCGAACTCCTCGCGCGCCTCCTCGCCCTCGGCCACCGCCTCGTGT
GGAACGTTGACCAGTGTCTGGGAGATCTGGGACTGCAGCTTAAGCTTGAA
GCGCAGCTGCATGTCCTCCTCGATTTTGTCCAGGCCCGTTTCGACCGCAT
CGAAGAACTCATCCTCGGGCAATGTGGAATGTGGACCCTCCTCGAAATCT
GGGGCCAGGAT
BS05421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7207-PA | 1806 | CG7207-RA | 870..1806 | 953..17 | 4685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cert-RC | 2394 | CG7207-RC | 893..1836 | 961..17 | 4700 | 99.9 | Minus |
cert-RA | 2557 | CG7207-RA | 1056..1999 | 961..17 | 4700 | 99.9 | Minus |
cert-RB | 1825 | CG7207-RB | 342..1267 | 942..17 | 4630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8283276..8283614 | 145..483 | 1695 | 100 | Plus |
3L | 28110227 | 3L | 8283773..8284010 | 484..721 | 1175 | 99.6 | Plus |
3L | 28110227 | 3L | 8284069..8284295 | 716..942 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 8283086..8283214 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:52:05 has no hits.
BS05421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:45 Download gff for
BS05421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7207-PA | 863..1806 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:02 Download gff for
BS05421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7207-PA | 863..1806 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:03:27 Download gff for
BS05421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cert-RA | 1105..2053 | 10..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:48 Download gff for
BS05421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cert-RA | 1056..2004 | 10..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:48 Download gff for
BS05421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8283773..8284004 | 484..715 | 100 | <- | Plus |
3L | 8284069..8284304 | 716..951 | 99 | | Plus |
3L | 8283081..8283213 | 10..144 | 97 | <- | Plus |
3L | 8283276..8283614 | 145..483 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:03:27 Download gff for
BS05421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8276181..8276313 | 10..144 | 97 | <- | Plus |
arm_3L | 8276376..8276714 | 145..483 | 100 | <- | Plus |
arm_3L | 8276873..8277104 | 484..715 | 100 | <- | Plus |
arm_3L | 8277169..8277404 | 716..951 | 99 | | Plus |
BS05421.5prime Sequence
931 bp (784 high quality bases) assembled on 2005-12-02
> BS05421.5prime
GAAGTTATCAGTCGACATGGACACGAACGCTGGGGAGTCGCTGGGAGCAT
CGCCGCCCTCGAGCAATGAGGCAGCGGCGGGATCACAGTCCCAGAGCGAT
GCCTCCGAGGAGGAGGAGTATCTGGACAACAGTATCGAACTGAGGGGCTA
TCTCAGCAAGTGGACGAACTACATCTATGGATGGCAGCCACGCTACATAG
TCCTGAAGGATGGTACACTCTCCTACTATAAATCCGAATCGGAGTCGGAT
TTCGGGTGCCGCGGAGCCATCAGCCTGACCAAGGCCACCATTAAGGCCCA
TGAGTCCGACGAGCTCCGATTCGATGTTGTGGTGAACAACTTAAATAACT
GGTGCCTGCGGGCAGAGACCAGCGAGGACCGCATGCACTGGGTGGATGTG
CTGCAGCTGTACAAGGCGGACTCCGGCAGCACGGACACCACTTCCTTGCG
CCGCCATGGCAGTACCATGAGCCTGCAATCGAACACTATCTCGCTGACCA
GCGGAGGAAGCCTAAAGAAGACGCAGCGCAACCTGCGCGAAAAAGTCGGC
GAGCTGGAGACCTTTAAGGATATACTATTTGGACAGATCGAGACTCTGCA
GCGATACTTTGATGCCTGCTCGGAGGTGAACAAAAACAATGCGCAACCAC
TGGACCTGGGCGACGGTCTGAAGTCCATCGATTTCAAGGGCGAATCCATC
ACGTTTCGGGCCACAACGTCTGGCGTGCTAACCACCCTGCAGCATTGCCT
AGAAATCATCGCCGAGAGCGATGAGTCATGGAAACGGNAACTGGAGCGTG
AAATAGATAAGCGTCGACGTTCTGAGGACCAAAGCAAAAAGCTCAAGGAT
GAAGTTGAGAAAATGAAGCGTCTATCGTATCCCTGGCCAGATTTCGAGGA
GGGGTCACATTCCACATTGCCCGAGGATGAG
BS05421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7207-PA | 1806 | CG7207-RA | 1..866 | 17..882 | 4286 | 99.7 | Plus |
CG7207-PA | 1806 | CG7207-RA | 871..915 | 887..931 | 175 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cert-RC | 2394 | CG7207-RC | 31..945 | 17..931 | 4474 | 99.3 | Plus |
cert-RA | 2557 | CG7207-RA | 194..1108 | 17..931 | 4474 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8287827..8288222 | 689..294 | 1980 | 100 | Minus |
3L | 28110227 | 3L | 8289169..8289448 | 296..17 | 1400 | 100 | Minus |
3L | 28110227 | 3L | 8287609..8287759 | 837..687 | 729 | 98.7 | Minus |
3L | 28110227 | 3L | 8287313..8287378 | 899..834 | 270 | 93.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:14:24 has no hits.
BS05421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:46 Download gff for
BS05421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7207-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:03 Download gff for
BS05421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7207-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:57:02 Download gff for
BS05421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cert-RA | 238..1157 | 10..931 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:27 Download gff for
BS05421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cert-RA | 189..1108 | 10..931 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:27 Download gff for
BS05421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8289170..8289451 | 10..295 | 98 | | Minus |
3L | 8287828..8288220 | 296..688 | 100 | <- | Minus |
3L | 8284261..8284293 | 899..931 | 94 | <- | Minus |
3L | 8287314..8287374 | 838..898 | 96 | <- | Minus |
3L | 8287609..8287757 | 689..837 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:57:02 Download gff for
BS05421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8277361..8277393 | 899..931 | 94 | <- | Minus |
arm_3L | 8280414..8280474 | 838..898 | 96 | <- | Minus |
arm_3L | 8280709..8280857 | 689..837 | 98 | <- | Minus |
arm_3L | 8280928..8281320 | 296..688 | 100 | <- | Minus |
arm_3L | 8282270..8282551 | 10..295 | 98 | | Minus |
BS05421.complete Sequence
1838 bp assembled on 2008-01-02
GenBank Submission: FJ635107
> BS05421.complete
GAAGTTATCAGTCGACATGGACACGAACGCTGGGGAGTCGCTGGGAGCAT
CGCCGCCCTCGAGCAATGAGGCAGCGGCGGGATCACAGTCCCAGAGCGAT
GCCTCCGAGGAGGAGGAGTATCTGGACAACAGTATCGAACTGAGGGGCTA
TCTCAGCAAGTGGACGAACTACATCTATGGATGGCAGCCACGCTACATAG
TCCTGAAGGATGGTACACTCTCCTACTATAAATCCGAATCGGAGTCGGAT
TTCGGGTGCCGCGGAGCCATCAGCCTGACCAAGGCCACCATTAAGGCCCA
TGAGTCCGACGAGCTCCGATTCGATGTTGTGGTGAACAACTTAAATAACT
GGTGCCTGCGGGCAGAGACCAGCGAGGACCGCATGCACTGGGTGGATGTG
CTGCAGCTGTACAAGGCGGACTCCGGCAGCACGGACACCACTTCCTTGCG
CCGCCATGGCAGTACCATGAGCCTGCAATCGAACACTATCTCGCTGACCA
GCGGAGGAAGCCTAAAGAAGACGCAGCGCAACCTGCGCGAAAAAGTCGGC
GAGCTGGAGACCTTTAAGGATATACTATTTGGACAGATCGAGACTCTGCA
GCGATACTTTGATGCCTGCTCGGAGGTGAACAAAAACAATGCGCAACCAC
TGGACCTGGGCGACGGTCTGAAGTCCATCGATTTCAAGGGCGAATCCATC
ACGTTTCGGGCCACAACGTCTGGCGTGCTAACCACCCTGCAGCATTGCCT
AGAAATCATCGCCGAGAGCGATGAGTCATGGAAACGGAAACTGGAGCGTG
AAATAGATAAGCGTCGACGTTCTGAGGACCAAAGCAAAAAGCTCAAGGAT
GAAGTTGAGAAAATGAAGCGTCTATCGTATCCTGGCCCAGATTTCGAGGA
GGGTCCACATTCCACATTGCCCGAGGATGAGTTCTTCGATGCGGTCGAAA
CGGGCCTGGACAAAATCGAGGAGGACATGCAGCTGCGCTTCAAGCTTAAG
CTGCAGTCCCAGATCTCCCAGACACTGGTCAACGTTCCACACGAGGCGGT
GGCCGAGGGCGAGGAGGCGCGCGAGGAGTTCGGCACGGGTGCGGAGGCCA
CCAGCCATGCCCTGTGGCCGGAGATCGATCGCGTGTGCAAGGAGCAACTG
CATTACGCACGCGAGGGCGTTGGCCAAGACGGCAACGGCTGGCAAATCTT
TGCCGACGAGGGGGAGATCAAAATGTACAAACGCGAGGAGGAGGTCAACG
GGCTGGTCATGGATCCCTTGAAGGCCTATCATACGGTGCAGGGCGTGACG
GCGAGGGAAATGTGCCATTACTTCTTCATGCCCGAGTTCCGAAATGACTG
GGAGACCACTTTGGAGGACTGCACCATCCTGGAAAAAATCTCGGCGGACA
CCCTGCTTTTCCTGCAAACCCATAAGCGGATATGGCCGGCGAGCCAGCGT
GATGCGCAATTTTGGTCGCACATGCGCAAGATCACAGACAATCTGGAGCC
GGGCGCCCGGGACATGTGGGTGGTGTGCAACAACTCGACGGAGTACGCCA
AGCAGGAGTCAAAGAATGGAAAATGCGTACGGATCTTCCTGACCGTCATC
CTGGCCTGCCAAACTCATTTGCCCGAGGGTTATGTGAAGGGACAGCCCCT
AAATCGCAACGATCTAACCTGCAAAATAACCTACTGCTCTGTTGTTAATC
CTGGAGGCTGGGCGCCAGCGAGTGCTCTGAGAGCCGTCTACAAGCGCGAG
TATCCCAAGTTTCTGAAGCGCTTTACGGGATACGTAATAGATCAGTGCAA
GGACAAGCCGATCATGTTCTGAAAGCTTTCTAGACCAT
BS05421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cert-RC | 1806 | CG7207-PC | 1..1806 | 17..1822 | 9015 | 99.9 | Plus |
cert-RA | 1806 | CG7207-PA | 1..1806 | 17..1822 | 9015 | 99.9 | Plus |
cert-RB | 990 | CG7207-PB | 65..990 | 897..1822 | 4630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cert-RC | 2394 | CG7207-RC | 31..1836 | 17..1822 | 9015 | 99.9 | Plus |
cert-RA | 2557 | CG7207-RA | 194..1999 | 17..1822 | 9015 | 99.9 | Plus |
cert-RB | 1825 | CG7207-RB | 342..1267 | 897..1822 | 4630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8287827..8288222 | 689..294 | 1980 | 100 | Minus |
3L | 28110227 | 3L | 8283276..8283614 | 1694..1356 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 8289169..8289448 | 296..17 | 1400 | 100 | Minus |
3L | 28110227 | 3L | 8283773..8284010 | 1355..1118 | 1175 | 99.6 | Minus |
3L | 28110227 | 3L | 8284069..8284295 | 1123..897 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 8287609..8287759 | 837..687 | 740 | 99.3 | Minus |
3L | 28110227 | 3L | 8283086..8283214 | 1822..1694 | 645 | 100 | Minus |
3L | 28110227 | 3L | 8287313..8287378 | 899..834 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:36 has no hits.
BS05421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:50 Download gff for
BS05421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7207-RA | 1..1806 | 17..1822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:39 Download gff for
BS05421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7207-RA | 181..1985 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:04 Download gff for
BS05421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cert-RA | 243..2047 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:50 Download gff for
BS05421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7207-RA | 176..1991 | 10..1829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:23 Download gff for
BS05421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cert-RA | 194..1998 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:23 Download gff for
BS05421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8284069..8284293 | 899..1123 | 100 | <- | Minus |
3L | 8287314..8287374 | 838..898 | 100 | <- | Minus |
3L | 8287609..8287757 | 689..837 | 99 | <- | Minus |
3L | 8283773..8284004 | 1124..1355 | 100 | <- | Minus |
3L | 8283087..8283213 | 1695..1821 | 100 | <- | Minus |
3L | 8283276..8283614 | 1356..1694 | 100 | <- | Minus |
3L | 8287828..8288220 | 296..688 | 100 | <- | Minus |
3L | 8289170..8289448 | 17..295 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:04 Download gff for
BS05421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8276187..8276313 | 1695..1821 | 100 | <- | Minus |
arm_3L | 8276376..8276714 | 1356..1694 | 100 | <- | Minus |
arm_3L | 8276873..8277104 | 1124..1355 | 100 | <- | Minus |
arm_3L | 8277169..8277393 | 899..1123 | 100 | <- | Minus |
arm_3L | 8280414..8280474 | 838..898 | 100 | <- | Minus |
arm_3L | 8280709..8280857 | 689..837 | 99 | <- | Minus |
arm_3L | 8280928..8281320 | 296..688 | 100 | <- | Minus |
arm_3L | 8282270..8282548 | 17..295 | 100 | | Minus |
BS05421.pep Sequence
Translation from 16 to 1821
> BS05421.pep
MDTNAGESLGASPPSSNEAAAGSQSQSDASEEEEYLDNSIELRGYLSKWT
NYIYGWQPRYIVLKDGTLSYYKSESESDFGCRGAISLTKATIKAHESDEL
RFDVVVNNLNNWCLRAETSEDRMHWVDVLQLYKADSGSTDTTSLRRHGST
MSLQSNTISLTSGGSLKKTQRNLREKVGELETFKDILFGQIETLQRYFDA
CSEVNKNNAQPLDLGDGLKSIDFKGESITFRATTSGVLTTLQHCLEIIAE
SDESWKRKLEREIDKRRRSEDQSKKLKDEVEKMKRLSYPGPDFEEGPHST
LPEDEFFDAVETGLDKIEEDMQLRFKLKLQSQISQTLVNVPHEAVAEGEE
AREEFGTGAEATSHALWPEIDRVCKEQLHYAREGVGQDGNGWQIFADEGE
IKMYKREEEVNGLVMDPLKAYHTVQGVTAREMCHYFFMPEFRNDWETTLE
DCTILEKISADTLLFLQTHKRIWPASQRDAQFWSHMRKITDNLEPGARDM
WVVCNNSTEYAKQESKNGKCVRIFLTVILACQTHLPEGYVKGQPLNRNDL
TCKITYCSVVNPGGWAPASALRAVYKREYPKFLKRFTGYVIDQCKDKPIM
F*
BS05421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cert-PC | 601 | CG7207-PC | 1..601 | 1..601 | 3180 | 100 | Plus |
cert-PA | 601 | CG7207-PA | 1..601 | 1..601 | 3180 | 100 | Plus |
cert-PB | 329 | CG7207-PB | 22..329 | 294..601 | 1662 | 99.7 | Plus |
Osbp-PA | 784 | CG6708-PA | 16..283 | 41..313 | 247 | 28.2 | Plus |