Clone BS05421 Report

Search the DGRC for BS05421

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptcert-RA
Protein status:BS05421.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05421.3prime Sequence

961 bp (900 high quality bases) assembled on 2005-12-02

> BS05421.3prime
ATGGTCTAGAAAGCTTTCAGAACATGATCGGCTTGTCCTTGCACTGATCT
ATTACGTATCCCGTAAAGCGCTTCAGAAACTTGGGATACTCGCGCTTGTA
GACGGCTCTCAGAGCACTCGCTGGCGCCCAGCCTCCAGGATTAACAACAG
AGCAGTAGGTTATTTTGCAGGTTAGATCGTTGCGATTTAGGGGCTGTCCC
TTCACATAACCCTCGGGCAAATGAGTTTGGCAGGCCAGGATGACGGTCAG
GAAGATCCGTACGCATTTTCCATTCTTTGACTCCTGCTTGGCGTACTCCG
TCGAGTTGTTGCACACCACCCACATGTCCCGGGCGCCCGGCTCCAGATTG
TCTGTGATCTTGCGCATGTGCGACCAAAATTGCGCATCACGCTGGCTCGC
CGGCCATATCCGCTTATGGGTTTGCAGGAAAAGCAGGGTGTCCGCCGAGA
TTTTTTCCAGGATGGTGCAGTCCTCCAAAGTGGTCTCCCAGTCATTTCGG
AACTCGGGCATGAAGAAGTAATGGCACATTTCCCTCGCCGTCACGCCCTG
CACCGTATGATAGGCCTTCAAGGGATCCATGACCAGCCCGTTGACCTCCT
CCTCGCGTTTGTACATTTTGATCTCCCCCTCGTCGGCAAAGATTTGCCAG
CCGTTGCCGTCTTGGCCAACGCCCTCGCGTGCGTAATGCAGTTGCTCCTT
GCACACGCGATCGATCTCCGGCCACAGGGCATGGCTGGTGGCCTCCGCAC
CCGTGCCGAACTCCTCGCGCGCCTCCTCGCCCTCGGCCACCGCCTCGTGT
GGAACGTTGACCAGTGTCTGGGAGATCTGGGACTGCAGCTTAAGCTTGAA
GCGCAGCTGCATGTCCTCCTCGATTTTGTCCAGGCCCGTTTCGACCGCAT
CGAAGAACTCATCCTCGGGCAATGTGGAATGTGGACCCTCCTCGAAATCT
GGGGCCAGGAT

BS05421.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7207-PA 1806 CG7207-RA 870..1806 953..17 4685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
cert-RC 2394 CG7207-RC 893..1836 961..17 4700 99.9 Minus
cert-RA 2557 CG7207-RA 1056..1999 961..17 4700 99.9 Minus
cert-RB 1825 CG7207-RB 342..1267 942..17 4630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8283276..8283614 145..483 1695 100 Plus
3L 28110227 3L 8283773..8284010 484..721 1175 99.6 Plus
3L 28110227 3L 8284069..8284295 716..942 1135 100 Plus
3L 28110227 3L 8283086..8283214 17..145 645 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:52:05 has no hits.

BS05421.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:45 Download gff for BS05421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7207-PA 863..1806 17..961 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:02 Download gff for BS05421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7207-PA 863..1806 17..961 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:03:27 Download gff for BS05421.3prime
Subject Subject Range Query Range Percent Splice Strand
cert-RA 1105..2053 10..961 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:48 Download gff for BS05421.3prime
Subject Subject Range Query Range Percent Splice Strand
cert-RA 1056..2004 10..961 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:48 Download gff for BS05421.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8283773..8284004 484..715 100 <- Plus
3L 8284069..8284304 716..951 99   Plus
3L 8283081..8283213 10..144 97 <- Plus
3L 8283276..8283614 145..483 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:03:27 Download gff for BS05421.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8276181..8276313 10..144 97 <- Plus
arm_3L 8276376..8276714 145..483 100 <- Plus
arm_3L 8276873..8277104 484..715 100 <- Plus
arm_3L 8277169..8277404 716..951 99   Plus

BS05421.5prime Sequence

931 bp (784 high quality bases) assembled on 2005-12-02

> BS05421.5prime
GAAGTTATCAGTCGACATGGACACGAACGCTGGGGAGTCGCTGGGAGCAT
CGCCGCCCTCGAGCAATGAGGCAGCGGCGGGATCACAGTCCCAGAGCGAT
GCCTCCGAGGAGGAGGAGTATCTGGACAACAGTATCGAACTGAGGGGCTA
TCTCAGCAAGTGGACGAACTACATCTATGGATGGCAGCCACGCTACATAG
TCCTGAAGGATGGTACACTCTCCTACTATAAATCCGAATCGGAGTCGGAT
TTCGGGTGCCGCGGAGCCATCAGCCTGACCAAGGCCACCATTAAGGCCCA
TGAGTCCGACGAGCTCCGATTCGATGTTGTGGTGAACAACTTAAATAACT
GGTGCCTGCGGGCAGAGACCAGCGAGGACCGCATGCACTGGGTGGATGTG
CTGCAGCTGTACAAGGCGGACTCCGGCAGCACGGACACCACTTCCTTGCG
CCGCCATGGCAGTACCATGAGCCTGCAATCGAACACTATCTCGCTGACCA
GCGGAGGAAGCCTAAAGAAGACGCAGCGCAACCTGCGCGAAAAAGTCGGC
GAGCTGGAGACCTTTAAGGATATACTATTTGGACAGATCGAGACTCTGCA
GCGATACTTTGATGCCTGCTCGGAGGTGAACAAAAACAATGCGCAACCAC
TGGACCTGGGCGACGGTCTGAAGTCCATCGATTTCAAGGGCGAATCCATC
ACGTTTCGGGCCACAACGTCTGGCGTGCTAACCACCCTGCAGCATTGCCT
AGAAATCATCGCCGAGAGCGATGAGTCATGGAAACGGNAACTGGAGCGTG
AAATAGATAAGCGTCGACGTTCTGAGGACCAAAGCAAAAAGCTCAAGGAT
GAAGTTGAGAAAATGAAGCGTCTATCGTATCCCTGGCCAGATTTCGAGGA
GGGGTCACATTCCACATTGCCCGAGGATGAG

BS05421.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7207-PA 1806 CG7207-RA 1..866 17..882 4286 99.7 Plus
CG7207-PA 1806 CG7207-RA 871..915 887..931 175 95.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
cert-RC 2394 CG7207-RC 31..945 17..931 4474 99.3 Plus
cert-RA 2557 CG7207-RA 194..1108 17..931 4474 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8287827..8288222 689..294 1980 100 Minus
3L 28110227 3L 8289169..8289448 296..17 1400 100 Minus
3L 28110227 3L 8287609..8287759 837..687 729 98.7 Minus
3L 28110227 3L 8287313..8287378 899..834 270 93.9 Minus
Blast to na_te.dros performed on 2015-02-12 01:14:24 has no hits.

BS05421.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:46 Download gff for BS05421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7207-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:03 Download gff for BS05421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7207-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:57:02 Download gff for BS05421.5prime
Subject Subject Range Query Range Percent Splice Strand
cert-RA 238..1157 10..931 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:27 Download gff for BS05421.5prime
Subject Subject Range Query Range Percent Splice Strand
cert-RA 189..1108 10..931 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:27 Download gff for BS05421.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8289170..8289451 10..295 98   Minus
3L 8287828..8288220 296..688 100 <- Minus
3L 8284261..8284293 899..931 94 <- Minus
3L 8287314..8287374 838..898 96 <- Minus
3L 8287609..8287757 689..837 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:57:02 Download gff for BS05421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8277361..8277393 899..931 94 <- Minus
arm_3L 8280414..8280474 838..898 96 <- Minus
arm_3L 8280709..8280857 689..837 98 <- Minus
arm_3L 8280928..8281320 296..688 100 <- Minus
arm_3L 8282270..8282551 10..295 98   Minus

BS05421.complete Sequence

1838 bp assembled on 2008-01-02

GenBank Submission: FJ635107

> BS05421.complete
GAAGTTATCAGTCGACATGGACACGAACGCTGGGGAGTCGCTGGGAGCAT
CGCCGCCCTCGAGCAATGAGGCAGCGGCGGGATCACAGTCCCAGAGCGAT
GCCTCCGAGGAGGAGGAGTATCTGGACAACAGTATCGAACTGAGGGGCTA
TCTCAGCAAGTGGACGAACTACATCTATGGATGGCAGCCACGCTACATAG
TCCTGAAGGATGGTACACTCTCCTACTATAAATCCGAATCGGAGTCGGAT
TTCGGGTGCCGCGGAGCCATCAGCCTGACCAAGGCCACCATTAAGGCCCA
TGAGTCCGACGAGCTCCGATTCGATGTTGTGGTGAACAACTTAAATAACT
GGTGCCTGCGGGCAGAGACCAGCGAGGACCGCATGCACTGGGTGGATGTG
CTGCAGCTGTACAAGGCGGACTCCGGCAGCACGGACACCACTTCCTTGCG
CCGCCATGGCAGTACCATGAGCCTGCAATCGAACACTATCTCGCTGACCA
GCGGAGGAAGCCTAAAGAAGACGCAGCGCAACCTGCGCGAAAAAGTCGGC
GAGCTGGAGACCTTTAAGGATATACTATTTGGACAGATCGAGACTCTGCA
GCGATACTTTGATGCCTGCTCGGAGGTGAACAAAAACAATGCGCAACCAC
TGGACCTGGGCGACGGTCTGAAGTCCATCGATTTCAAGGGCGAATCCATC
ACGTTTCGGGCCACAACGTCTGGCGTGCTAACCACCCTGCAGCATTGCCT
AGAAATCATCGCCGAGAGCGATGAGTCATGGAAACGGAAACTGGAGCGTG
AAATAGATAAGCGTCGACGTTCTGAGGACCAAAGCAAAAAGCTCAAGGAT
GAAGTTGAGAAAATGAAGCGTCTATCGTATCCTGGCCCAGATTTCGAGGA
GGGTCCACATTCCACATTGCCCGAGGATGAGTTCTTCGATGCGGTCGAAA
CGGGCCTGGACAAAATCGAGGAGGACATGCAGCTGCGCTTCAAGCTTAAG
CTGCAGTCCCAGATCTCCCAGACACTGGTCAACGTTCCACACGAGGCGGT
GGCCGAGGGCGAGGAGGCGCGCGAGGAGTTCGGCACGGGTGCGGAGGCCA
CCAGCCATGCCCTGTGGCCGGAGATCGATCGCGTGTGCAAGGAGCAACTG
CATTACGCACGCGAGGGCGTTGGCCAAGACGGCAACGGCTGGCAAATCTT
TGCCGACGAGGGGGAGATCAAAATGTACAAACGCGAGGAGGAGGTCAACG
GGCTGGTCATGGATCCCTTGAAGGCCTATCATACGGTGCAGGGCGTGACG
GCGAGGGAAATGTGCCATTACTTCTTCATGCCCGAGTTCCGAAATGACTG
GGAGACCACTTTGGAGGACTGCACCATCCTGGAAAAAATCTCGGCGGACA
CCCTGCTTTTCCTGCAAACCCATAAGCGGATATGGCCGGCGAGCCAGCGT
GATGCGCAATTTTGGTCGCACATGCGCAAGATCACAGACAATCTGGAGCC
GGGCGCCCGGGACATGTGGGTGGTGTGCAACAACTCGACGGAGTACGCCA
AGCAGGAGTCAAAGAATGGAAAATGCGTACGGATCTTCCTGACCGTCATC
CTGGCCTGCCAAACTCATTTGCCCGAGGGTTATGTGAAGGGACAGCCCCT
AAATCGCAACGATCTAACCTGCAAAATAACCTACTGCTCTGTTGTTAATC
CTGGAGGCTGGGCGCCAGCGAGTGCTCTGAGAGCCGTCTACAAGCGCGAG
TATCCCAAGTTTCTGAAGCGCTTTACGGGATACGTAATAGATCAGTGCAA
GGACAAGCCGATCATGTTCTGAAAGCTTTCTAGACCAT

BS05421.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
cert-RC 1806 CG7207-PC 1..1806 17..1822 9015 99.9 Plus
cert-RA 1806 CG7207-PA 1..1806 17..1822 9015 99.9 Plus
cert-RB 990 CG7207-PB 65..990 897..1822 4630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
cert-RC 2394 CG7207-RC 31..1836 17..1822 9015 99.9 Plus
cert-RA 2557 CG7207-RA 194..1999 17..1822 9015 99.9 Plus
cert-RB 1825 CG7207-RB 342..1267 897..1822 4630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8287827..8288222 689..294 1980 100 Minus
3L 28110227 3L 8283276..8283614 1694..1356 1695 100 Minus
3L 28110227 3L 8289169..8289448 296..17 1400 100 Minus
3L 28110227 3L 8283773..8284010 1355..1118 1175 99.6 Minus
3L 28110227 3L 8284069..8284295 1123..897 1135 100 Minus
3L 28110227 3L 8287609..8287759 837..687 740 99.3 Minus
3L 28110227 3L 8283086..8283214 1822..1694 645 100 Minus
3L 28110227 3L 8287313..8287378 899..834 315 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:36 has no hits.

BS05421.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:50 Download gff for BS05421.complete
Subject Subject Range Query Range Percent Splice Strand
CG7207-RA 1..1806 17..1822 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:39 Download gff for BS05421.complete
Subject Subject Range Query Range Percent Splice Strand
CG7207-RA 181..1985 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:04 Download gff for BS05421.complete
Subject Subject Range Query Range Percent Splice Strand
cert-RA 243..2047 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:50 Download gff for BS05421.complete
Subject Subject Range Query Range Percent Splice Strand
CG7207-RA 176..1991 10..1829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:23 Download gff for BS05421.complete
Subject Subject Range Query Range Percent Splice Strand
cert-RA 194..1998 17..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:23 Download gff for BS05421.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8284069..8284293 899..1123 100 <- Minus
3L 8287314..8287374 838..898 100 <- Minus
3L 8287609..8287757 689..837 99 <- Minus
3L 8283773..8284004 1124..1355 100 <- Minus
3L 8283087..8283213 1695..1821 100 <- Minus
3L 8283276..8283614 1356..1694 100 <- Minus
3L 8287828..8288220 296..688 100 <- Minus
3L 8289170..8289448 17..295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:04 Download gff for BS05421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8276187..8276313 1695..1821 100 <- Minus
arm_3L 8276376..8276714 1356..1694 100 <- Minus
arm_3L 8276873..8277104 1124..1355 100 <- Minus
arm_3L 8277169..8277393 899..1123 100 <- Minus
arm_3L 8280414..8280474 838..898 100 <- Minus
arm_3L 8280709..8280857 689..837 99 <- Minus
arm_3L 8280928..8281320 296..688 100 <- Minus
arm_3L 8282270..8282548 17..295 100   Minus

BS05421.pep Sequence

Translation from 16 to 1821

> BS05421.pep
MDTNAGESLGASPPSSNEAAAGSQSQSDASEEEEYLDNSIELRGYLSKWT
NYIYGWQPRYIVLKDGTLSYYKSESESDFGCRGAISLTKATIKAHESDEL
RFDVVVNNLNNWCLRAETSEDRMHWVDVLQLYKADSGSTDTTSLRRHGST
MSLQSNTISLTSGGSLKKTQRNLREKVGELETFKDILFGQIETLQRYFDA
CSEVNKNNAQPLDLGDGLKSIDFKGESITFRATTSGVLTTLQHCLEIIAE
SDESWKRKLEREIDKRRRSEDQSKKLKDEVEKMKRLSYPGPDFEEGPHST
LPEDEFFDAVETGLDKIEEDMQLRFKLKLQSQISQTLVNVPHEAVAEGEE
AREEFGTGAEATSHALWPEIDRVCKEQLHYAREGVGQDGNGWQIFADEGE
IKMYKREEEVNGLVMDPLKAYHTVQGVTAREMCHYFFMPEFRNDWETTLE
DCTILEKISADTLLFLQTHKRIWPASQRDAQFWSHMRKITDNLEPGARDM
WVVCNNSTEYAKQESKNGKCVRIFLTVILACQTHLPEGYVKGQPLNRNDL
TCKITYCSVVNPGGWAPASALRAVYKREYPKFLKRFTGYVIDQCKDKPIM
F*

BS05421.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
cert-PC 601 CG7207-PC 1..601 1..601 3180 100 Plus
cert-PA 601 CG7207-PA 1..601 1..601 3180 100 Plus
cert-PB 329 CG7207-PB 22..329 294..601 1662 99.7 Plus
Osbp-PA 784 CG6708-PA 16..283 41..313 247 28.2 Plus