Clone BS05422 Report

Search the DGRC for BS05422

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptSap-r-RA
Protein status:BS05422.pep: full length peptide match
Sequenced Size:2894

Clone Sequence Records

BS05422.complete Sequence

2894 bp assembled on 2009-12-07

GenBank Submission: KX799886

> BS05422.complete
GAAGTTATCAGTCGACATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCAC
TGTGCTGCGCCTTTGGCGTCTTCGCCGCTGCCACGCCCCTTTTGGGCTCC
AGCAAGTGCACCTGGGGACCCTCCTACTGGTGCGGAAATTTCAGCAACTC
CAAGGAATGTCGTGCCACCCGCCACTGCATCCAAACCGTTTGGGAAACCC
AAAAGGTGCCGGTGGACACGGACTCCATCTGCACGATATGCAAGGACATG
GTTACTCAGGCCCGCGACCAGCTGAAGAGCAACCAGACAGAGGAGGAGCT
GAAGGAGGTCTTCGAGGGCTCCTGCAAGCTGATTCCGATCAAGCCGATCC
AGAAGGAGTGCATCAAGGTGGCCGATGACTTCCTGCCCGAGTTGGTCGAG
GCCCTGGCCTCGCAGATGAATCCAGATCAAGTTTGCTCTGTGGCCGGACT
TTGCAACAGTGCTCGCATCGACGAATTGTATAAGAACGGCATTCAGGCTG
GTCTTGATGGAACCGTCCAGAATGAAGATGACAGCTCCGAGGAGACCGAG
TTGGCCATGCAGCCTAACCAACTTTCCTGCGGCAACTGCAACCTGCTTTC
CCGCCTGATGCACTCGAAATTTGCGGCTACCGATCGCGATGACATGGTGG
AAACGATGCTTCATATGTGCGGATCGCTATCTAGTTTCTCAGACGCCTGT
GCCAACATTGTGCTCACCTATTTTAATGATATCTACGACCATGTGAGCAA
GCACTTGACCACGGATGCCGTGTGCCATGTGTCCGGAGTGTGTGCCTCCA
GATATCACCAGCATGAAGAGGAAAAGCAACCGCAAGAAGCCTTAGTTGCC
TTGGATGCCGGCGATGATATTCCATGCGAACTATGCGAGCAACTAGTAAA
GCACCTTCGCGACGTCTTGGTGGCCAACACCACTGAAACGGAGTTCAAGC
AAGTTATGGAAGGATTCTGCAAGCAGTCAAAGGGATTCAAGGACGAGTGC
CTTAGCATTGTTGACCAATACTACCATGTGATTTACGAGACTCTGGTCAG
CAAGTTAGATGCCAATGGAGCCTGCTGCATGATCGGCATTTGCCAGAAGA
ACTCCGCCTCCTCGATGAAGGATGTCCCAATCATGCCGCTGCTGCCTGTT
ATTGAGCCGGCTCAGGTAAAGATCACCATCGAGAAGCTGGAGAAGCACGA
GAAGAAGCAACTGGGCGCCAGTGAGCCGAAGTTCAGCCAGCAAGAGATCC
TGGACATGCAGCTGCCCATTGATCACCTAATGGGTGCAGCTAATCCCGGA
GCTTTGGTCGAGGGTGGAGAGCTGTGCACCCTGTGTGAGTACATGCTGCA
TTTCATTCAGGAGACTCTGGCTACCCCCTCCACGGATGACGAGATCAAGC
ACACCGTGGAGAACATCTGCGCCAAACTGCCCTCGGGAGTTGCCGGTCAA
TGCCGCAACTTCGTGGAGATGTATGGCGATGCTGTGATAGCTCTGCTCGT
CCAAGGACTGAATCCTCGTGACGTGTGCCCCCTCATGCAGATGTGCCCGA
AGAATCTGCCCAAGAAGGAAGATGTCGAAGTGTTCAATCCCCAGCCAGCC
AGCGATGAGCAGGATCCCCCAACTTGCCCTCTGTGCCTCTTTGCCGTTGA
GCAGGCCCAGATGAAGATCCGCGACAACAAGTCCAAGGATAATATCAAAA
AGGTTCTGAATGGCCTTTGCAGCCATCTGCCCAACGAGATAAAGGAAGAA
TGCGTAGACTTCGTGAACACCTATTCCAATGAGCTGATCGACATGCTGAT
CACAGATTTTAAGCCGCAGGAGATCTGCGTCCAACTGAAGCTCTGCCCAA
AGACCACTTACGCTCTCTGGGACTTGCGCATCTCGCTGGAGGACGATGTC
GATGGTGAGGACAAATCCAGCAGTGAGGAAATCAGCTTCAATGACATTGA
GTCCCTTGAGGAGCTGCCCCCTCAGCTGGCCTTCGACCCAGGATTCACCG
CTGCTCCGAACTGCCTGATCTGCGAGGAGTTGGTTAAGACCTTGGAGAAG
CGTATGGGCAAGCACCCCACCAGAGACAGCATCAAGCATATCCTGGAGGA
GTCTTGCGACCGAATGAGGAAGCCAATGAACACTAAATGCCACAAGGTTA
TCGACAAGTACGGCGATAAGATCGCCGATCTGCTGTTAAAGGAAATGGAT
CCCAAGCTTATCTGCACGGAGTTGGGAATGTGCATCCTGGCTGATCTGGA
TGATCTCGAAGTGGATGAGGCTTTGAAGTACGACGTGATTGCTCTGCCGC
GCCAGGACAACAAGCTGTCTAGCAGCATCAAGGAGCCGCCCACCTGCGTC
CTTTGCGAATTTATCATGACCAAGTTGGATGCCGATCTAAAGAATAAGAC
CGAACAGGACGACATTAAGCGAGCGATTGAAGCCGTGTGCAATCGCCTGC
CAGCCACGGTGCGCAAACAGTGCGACACCTTCGTCGATGGATATGCCTCT
GCGGTCCTGAAATTGCTGAGCGATGTGCCGCCCAAGCAGGTGTGCCAGAA
ACTGCAGCTCTGCTTCAGCGTGGCCGTCACCGATGAAGTTTTGGAGTGTG
GTGTGTGCCATGGAGTCACCCAGGCTCTGTTGCCCTTCCTGCGCGAGAAG
AAAGATAACGTATCCGAAGTGACAGCCCTACAGATGACATCGGTGGGATG
CGAGAACTTGCCAGCCAAGTACTACAAGATCTGCTCTGAGATGATCTCCA
TCTATGGCAGTAGCATTAAGAACTTGGCCAAACGACCCTATATTGATCAG
TCGCATATTTGCGCCGAGATTGGCAAGTGTTTCGAAAGCGAGAAGTCTTC
GCTGGCCTTTGCTAGAATTTCAGCCTAAAAGCTTTCTAGACCAT

BS05422.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-RA 2862 CG12070-PA 1..2862 17..2878 14310 100 Plus
Sap-r-RB 2631 CG12070-PB 1..2631 248..2878 13155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-RA 3440 CG12070-RA 130..2991 17..2878 14310 100 Plus
Sap-r-RB 3349 CG12070-RB 87..2900 65..2878 14070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30884720..30886547 2255..428 9140 100 Minus
3R 32079331 3R 30884175..30884650 2731..2256 2380 100 Minus
3R 32079331 3R 30886622..30886907 427..142 1430 100 Minus
3R 32079331 3R 30883976..30884117 2873..2732 710 100 Minus
3R 32079331 3R 30888661..30888740 144..65 400 100 Minus
3R 32079331 3R 30888884..30888933 66..17 250 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:10:14 has no hits.

BS05422.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:26 Download gff for BS05422.complete
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 141..3000 17..2876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:41 Download gff for BS05422.complete
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 130..2989 17..2876 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:11 Download gff for BS05422.complete
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 141..3000 17..2876 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:29 Download gff for BS05422.complete
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 130..2989 17..2876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:29 Download gff for BS05422.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30883974..30884117 2732..2876 98 <- Minus
3R 30884175..30884650 2256..2731 100 <- Minus
3R 30884720..30886547 428..2255 100 <- Minus
3R 30886622..30886904 145..427 100 <- Minus
3R 30888661..30888739 66..144 100 <- Minus
3R 30888885..30888933 17..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:41 Download gff for BS05422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26709696..26709839 2732..2876 98 <- Minus
arm_3R 26709897..26710372 2256..2731 100 <- Minus
arm_3R 26710442..26712269 428..2255 100 <- Minus
arm_3R 26712344..26712626 145..427 100 <- Minus
arm_3R 26714383..26714461 66..144 100 <- Minus
arm_3R 26714607..26714655 17..65 100   Minus

BS05422.3prime Sequence

892 bp (682 high quality bases) assembled on 2005-12-02

> BS05422.3prime
ATGGTCTAGAAAGCTTTTAGGCTGAAATTCTAGCAAAGGCCAGCGAAGAC
TTCTCGCTTTCGAAACACTTGCCAATCTCGGCGCAAATATGCGACTGATC
AATATAGGGTCGTTTGGCCAAGTTCTTAATGCTACTGCCATAGATGGAGA
TCATCTCAGAGCAGATCTTGTAGTACTTGGCTGGCAAGTTCTCGCATCCC
ACCGATGTCATCTGTAGGGCTGTCACTTCGGATACGTTATCTTTCTTCTC
GCGCAGGAAGGGCAACAGAGCCTGGGTGACTCCATGGCACACACCACACT
CCAAAACTTCATCGGTGACGGCCACGCTGAAGCAGAGCTGCAGTTTCTGG
CACACCTGCTTGGGCGGCACATCGCTCAGCAATTTCAGGACCGCAGAGGC
ATATCCATCGACGAAGGTGTCGCACTGTTTGCGCACCGTGGCTGGCAGGC
GATTGCACACGGCTTCAATCGCTCGCTTAATGTCGTCCTGTTCGGTCTTA
TTCTTTAGATCGGCATCCAACTTGGTCATGATAAATTCGCAAAGGACGCA
GGTGGGCGGCTCCTTGATGCTGCTAGACAGCTTGTTGTCCTGGCGCGGCA
GAGCAATCACGTCGTACTTCAAAGCCTCATCCACTTCGAGATCATCCAGA
TCAGCCAGGATGCACATTCCCAACTCCGTGCAGATAAGCTTGGGATCCAT
TTCCTTTAACAGCAGATCGGCGATCTTATCGCCGTACTTGTCGATAACCT
TGTGGCATTTAGTGTTCATTGGCTTCCTCATTCGGTCGCAAGACTCCTCC
AGGATATGCTTGATGCTGTCTCTGGTGGGGTGCTTGCCCATACGCTTCTC
CAGGTCTTAACCACTCCTCGCAGATCAGGCAGTTCGGAGCAG

BS05422.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12070-PA 2862 Sap-r-RA 2027..2862 852..17 4180 100 Minus
CG12070-PB 2631 Sap-r-RB 1796..2631 852..17 4180 100 Minus
CG12070-PA 2862 Sap-r-RA 1985..2014 892..863 150 100 Minus
CG12070-PB 2631 Sap-r-RB 1754..1783 892..863 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-RB 3349 CG12070-RB 2023..2900 892..17 4340 99.8 Minus
Sap-r-RA 3440 CG12070-RA 2114..2991 892..17 4340 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30884175..30884650 164..639 2380 100 Plus
3R 32079331 3R 30884720..30884974 640..892 1175 99.2 Plus
3R 32079331 3R 30883976..30884117 22..163 710 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:55:39 has no hits.

BS05422.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:47 Download gff for BS05422.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-PA 1985..2862 17..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:05 Download gff for BS05422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12070-PB 1754..2631 17..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:54:03 Download gff for BS05422.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 2114..2991 17..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:18 Download gff for BS05422.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 2114..2991 17..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:18 Download gff for BS05422.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30884720..30884974 640..892 99   Plus
3R 30883969..30884117 12..163 97 <- Plus
3R 30884175..30884650 164..639 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:54:03 Download gff for BS05422.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26709691..26709839 12..163 97 <- Plus
arm_3R 26709897..26710372 164..639 100 <- Plus
arm_3R 26710442..26710696 640..892 99   Plus

BS05422.5prime Sequence

913 bp (690 high quality bases) assembled on 2005-12-02

> BS05422.5prime
GAAGTTATCAGTCGACATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCAC
TGTGCTGCGCCTTTGGCGTCTTCGCCGCTGCCACGCCCCTTTTGGGCTCC
AGCAAGTGCACCTGGGGACCCTCCTACTGGTGCGGAAATTTCAGCAACTC
CAAGGAATGTCGTGCCACCCGCCACTGCATCCAAACCGTTTGGGAAACCC
AAAAGGTGCCGGTGGACACGGACTCCATCTGCACGATATGCAAGGACATG
GTTACTCAGGCCCGCGACCAGCTGAAGAGCAACCAGACAGAGGAGGAGCT
GAAGGAGGTCTTCGAGGGCTCCTGCAAGCTGATTCCGATCAAGCCGATCC
AGAAGGAGTGCATCAAGGTGGCCGATGACTTCCTGCCCGAGTTGGTCGAG
GCCCTGGCCTCGCAGATGAATCCAGATCAAGTTTGCTCTGTGGCCGGACT
TTGCAACAGTGCTCGCATCGACGAATTGTATAAGAACGGCATTCAGGCTG
GTCTTGATGGAACCGTCCAGAATGAAGATGACAGCTCCGAGGAGACCGAG
TTGGCCATGCAGCCTAACCAACTTTCCTGCGGCAACTGCAACCTGCTTTC
CCGCCTGATGCACTCGAAATTTGCGGCTACCGATCGCGATGACATGGTGG
AAACGATGCTTCATATGTGCGGATCGCTATCTAGTTTCTCAGACGCCTGT
GCCAACATTGTGCTCACCTATTTTAATGATATCTACGACCATGTGAGCAA
GCACTTGACCACGGATGCCGTGTGCCATGTGTCCGGAGTGTGTGCCTCCA
GATATCACCAGCATGAAGAGGAAAAGCAACCGCAAGAAGCCTTAGTTGCC
TTGGATGCCNGCGATGATATTCCATGCGAACTATGCGAGCAACTAGTAAA
AGCACTTCGCGAC

BS05422.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12070-PA 2862 Sap-r-RA 1..884 17..900 4401 99.8 Plus
CG12070-PB 2631 Sap-r-RB 1..653 248..900 3246 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-RA 3440 CG12070-RA 130..1026 17..913 4429 99.7 Plus
Sap-r-RB 3349 CG12070-RB 87..935 65..913 4189 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30886062..30886547 913..428 2359 99 Minus
3R 32079331 3R 30886622..30886907 427..142 1430 100 Minus
3R 32079331 3R 30888661..30888740 144..65 400 100 Minus
3R 32079331 3R 30888884..30888933 66..17 250 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:56:54 has no hits.

BS05422.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:48 Download gff for BS05422.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:06 Download gff for BS05422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12070-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:24 Download gff for BS05422.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 130..1026 17..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:58 Download gff for BS05422.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 130..1026 17..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:58 Download gff for BS05422.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30886062..30886547 428..913 99 <- Minus
3R 30886622..30886904 145..427 100 <- Minus
3R 30888661..30888739 66..144 100 <- Minus
3R 30888885..30888933 17..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:24 Download gff for BS05422.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26711784..26712269 428..913 99 <- Minus
arm_3R 26712344..26712626 145..427 100 <- Minus
arm_3R 26714383..26714461 66..144 100 <- Minus
arm_3R 26714607..26714655 17..65 100   Minus

BS05422.pep Sequence

Translation from 16 to 2877

> BS05422.pep
MERAGLLAVLALCCAFGVFAAATPLLGSSKCTWGPSYWCGNFSNSKECRA
TRHCIQTVWETQKVPVDTDSICTICKDMVTQARDQLKSNQTEEELKEVFE
GSCKLIPIKPIQKECIKVADDFLPELVEALASQMNPDQVCSVAGLCNSAR
IDELYKNGIQAGLDGTVQNEDDSSEETELAMQPNQLSCGNCNLLSRLMHS
KFAATDRDDMVETMLHMCGSLSSFSDACANIVLTYFNDIYDHVSKHLTTD
AVCHVSGVCASRYHQHEEEKQPQEALVALDAGDDIPCELCEQLVKHLRDV
LVANTTETEFKQVMEGFCKQSKGFKDECLSIVDQYYHVIYETLVSKLDAN
GACCMIGICQKNSASSMKDVPIMPLLPVIEPAQVKITIEKLEKHEKKQLG
ASEPKFSQQEILDMQLPIDHLMGAANPGALVEGGELCTLCEYMLHFIQET
LATPSTDDEIKHTVENICAKLPSGVAGQCRNFVEMYGDAVIALLVQGLNP
RDVCPLMQMCPKNLPKKEDVEVFNPQPASDEQDPPTCPLCLFAVEQAQMK
IRDNKSKDNIKKVLNGLCSHLPNEIKEECVDFVNTYSNELIDMLITDFKP
QEICVQLKLCPKTTYALWDLRISLEDDVDGEDKSSSEEISFNDIESLEEL
PPQLAFDPGFTAAPNCLICEELVKTLEKRMGKHPTRDSIKHILEESCDRM
RKPMNTKCHKVIDKYGDKIADLLLKEMDPKLICTELGMCILADLDDLEVD
EALKYDVIALPRQDNKLSSSIKEPPTCVLCEFIMTKLDADLKNKTEQDDI
KRAIEAVCNRLPATVRKQCDTFVDGYASAVLKLLSDVPPKQVCQKLQLCF
SVAVTDEVLECGVCHGVTQALLPFLREKKDNVSEVTALQMTSVGCENLPA
KYYKICSEMISIYGSSIKNLAKRPYIDQSHICAEIGKCFESEKSSLAFAR
ISA*

BS05422.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-PA 953 CG12070-PA 1..953 1..953 5029 100 Plus
Sap-r-PB 876 CG12070-PB 1..876 78..953 4598 100 Plus
Sap-r-PB 876 CG12070-PB 354..861 66..610 296 20.1 Plus