Clone BS05423 Report

Search the DGRC for BS05423

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG5498-RB
Protein status:BS05423.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05423.3prime Sequence

926 bp (874 high quality bases) assembled on 2005-12-02

> BS05423.3prime
ATGGTCTAGAAAGCTTTTATATCGCAGTTTTCACGGATTTTACACTGGAT
TGCGATACAGTACCATCCTCCACCTCAAGATCCTGCAGCATGGCAATCAT
CTCCTCGTCCGTAATCACAACCTCCGCCCTTAGGTTGTTATTAATATGTG
GACTAAACGTAGCCGGCGCAGATTCTCCAGCCAGTTCACGCAATTCCTGC
TCAAGTTGATCATCTTCCTGGCTCGCGTTCTCCACAACGCTATTGGACAT
TATGTCCTGAACTTCCCGATGCTGGTCGAGCGTGTCCCGCACATCGGCCA
ATACTTCGTCGACATTGTCGTACTTCAATCCAGAATTCGAGAGAACCTTC
TTCAAGGTATTTGATCCGATCTTGTAGGCATCCAGAACAACGCCACTGTT
CTGGGCCTCATCCACACTGGACAGAAGAGATTCGATGTTGTGCAGGGCAA
GACTGCGACGTTCATGATTCTTTTCCAGGAGATGCCTTTTTCGTAGATAG
GTTTTTGCCATTTGCCGTTTGTTCTCCTTCATGTACTGGCGCACTTTGTC
ATCGTTCACCTTGATCTCCTCCTCTAGGTCCTCCAACTGCTTGAGTAACT
GAGCTTGGGTATTCTGAAGATTGTGGACGGCCTGGTCTTCTTGGCTTATA
TTAAGATCGTCGCCAGGTTTTTTTGGTATTTTGATCAAGTGAATTTGGCG
TATGCCTTTTTCTACTTTAAATTCTAGGCCCAAGATTTGACGAACATTTA
AGGCCAACAGGCAAGCGCATAGATCTTTGTCTGAGTAAGTGGGAACTCCG
TGAGTCTTACAAAGCGTTTTCAAAGCATTAAAGTGCAGTAGTTTTCCAGT
GTTTTCCGACAGGACTTTTTCGGCGATGAGATCGCAAGTGTTGTTTAAGG
CATCTAGGTGAATCCATTCAATAAAG

BS05423.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 1347 CG5498-RB 442..1347 922..17 4530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1523 CG5498-RB 528..1434 922..16 4535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20382494..20382941 16..463 2240 100 Plus
3L 28110227 3L 20383281..20383500 673..892 1100 100 Plus
3L 28110227 3L 20383010..20383219 463..672 1050 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:15:12 has no hits.

BS05423.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:49 Download gff for BS05423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 437..1347 17..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:08 Download gff for BS05423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 437..1347 17..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:12:31 Download gff for BS05423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 523..1438 11..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:03 Download gff for BS05423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 523..1438 11..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:03 Download gff for BS05423.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20382490..20382940 11..462 99 <- Plus
3L 20383010..20383219 463..672 100 <- Plus
3L 20383281..20383500 673..892 100 <- Plus
3L 20383553..20383587 893..926 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:12:31 Download gff for BS05423.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20375590..20376040 11..462 99 <- Plus
arm_3L 20376110..20376319 463..672 100 <- Plus
arm_3L 20376381..20376600 673..892 100 <- Plus
arm_3L 20376653..20376687 893..926 97   Plus

BS05423.5prime Sequence

870 bp (813 high quality bases) assembled on 2005-12-02

> BS05423.5prime
GAAGTTATCAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAA
CCGACCACTTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAG
GTGCAGTTCGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGA
CGCAAAAATGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCA
GCGGACGACCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGG
GGTGACCAACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCA
GAGGAAGCAGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATT
CCTGGGGTGGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGG
AGCTGGTCGAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTC
CGCTTTAATTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATC
TCATCGCCGAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTT
AATGCTTTGAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGA
CAAAGATCTATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGG
GCCTAGAATTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAA
ATACCAAAAAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGC
CGTCCACAATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGG
ACCTAGAGGAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTACATG
AAGGAGAACAAACGGCAAAT

BS05423.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 1347 CG5498-RB 1..854 17..870 4270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1523 CG5498-RB 87..940 17..870 4270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20383553..20384023 487..17 2355 100 Minus
3L 28110227 3L 20383281..20383500 707..488 1100 100 Minus
3L 28110227 3L 20383057..20383219 870..708 815 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:30:16 has no hits.

BS05423.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:50 Download gff for BS05423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 1..854 17..870 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:09 Download gff for BS05423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 1..854 17..870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:25:34 Download gff for BS05423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..940 17..870 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:07 Download gff for BS05423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..940 17..870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:09:07 Download gff for BS05423.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20383057..20383219 708..870 100 <- Minus
3L 20383281..20383500 488..707 100 <- Minus
3L 20383553..20384023 17..487 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:25:34 Download gff for BS05423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20376157..20376319 708..870 100 <- Minus
arm_3L 20376381..20376600 488..707 100 <- Minus
arm_3L 20376653..20377123 17..487 100   Minus

BS05423.complete Sequence

1379 bp (1379 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635108

> BS05423.complete
GAAGTTATCAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAA
CCGACCACTTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAG
GTGCAGTTCGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGA
CGCAAAAATGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCA
GCGGACGACCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGG
GGTGACCAACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCA
GAGGAAGCAGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATT
CCTGGGGTGGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGG
AGCTGGTCGAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTC
CGCTTTAATTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATC
TCATCGCCGAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTT
AATGCTTTGAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGA
CAAAGATCTATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGG
GCCTAGAATTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAA
ATACCAAAAAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGC
CGTCCACAATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGG
ACCTAGAGGAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTACATG
AAGGAGAACAAACGGCAAATGGCAAAAACCTATCTACGAAAAAGGCATCT
CCTGGAAAAGAATCATGAACGTCGCAGTCTTGCCCTGCACAACATCGAAT
CTCTTCTGTCCAGTGTGGATGAGGCCCAGAACAGTGGCGTTGTTCTGGAT
GCCTACAAGATCGGATCAAATACCTTGAAGAAGGTTCTCTCGAATTCTGG
ATTGAAGTACGACAATGTCGACGAAGTATTGGCCGATGTGCGGGACACGC
TCGACCAGCATCGGGAAGTTCAGGACATAATGTCCAATAGCGTTGTGGAG
AACGCGAGCCAGGAAGATGATCAACTTGAGCAGGAATTGCGTGAACTGGC
TGGAGAATCTGCGCCGGCTACGTTTAGTCCACATATTAATAACAACCTAA
GGGCGGAGGTTGTGATTACGGACGAGGAGATGATTGCCATGCTGCAGGAT
CTTGAGGTGGAGGATGGTACTGTATCGCAATCCAGTGTAAAATCCGTGAA
AACTGCGATATAAAAGCTTTCTAGACCAT

BS05423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1347 CG5498-PB 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1523 CG5498-RB 87..1434 17..1364 6740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20383553..20384023 487..17 2355 100 Minus
3L 28110227 3L 20382494..20382941 1364..917 2240 100 Minus
3L 28110227 3L 20383281..20383500 707..488 1100 100 Minus
3L 28110227 3L 20383010..20383219 917..708 1050 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:32:53 has no hits.

BS05423.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:31 Download gff for BS05423.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:31 Download gff for BS05423.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 72..1423 17..1369 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:45 Download gff for BS05423.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..1431 17..1361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:31 Download gff for BS05423.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 72..1423 17..1369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:30 Download gff for BS05423.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..1431 17..1361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:30 Download gff for BS05423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20382497..20382940 918..1361 100 <- Minus
3L 20383010..20383219 708..917 100 <- Minus
3L 20383281..20383500 488..707 100 <- Minus
3L 20383553..20384023 17..487 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:45 Download gff for BS05423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20375597..20376040 918..1361 100 <- Minus
arm_3L 20376110..20376319 708..917 100 <- Minus
arm_3L 20376381..20376600 488..707 100 <- Minus
arm_3L 20376653..20377123 17..487 100   Minus

BS05423.pep Sequence

Translation from 16 to 1362

> BS05423.pep
MGLGSGDRVNETDHFSFPASWQDNGRMQVQFAMFRSRHLDAEGYDAKMNF
WMDLIAKYLKFSGRPIFSLRDLQLLFMRGDQLPACLDTVISEMQQRKQIR
SRSEFEYDPANSWGGWLVNSLVKRPLSWSWSKIKHSVVTEDLEASALIEW
IHLDALNNTCDLIAEKVLSENTGKLLHFNALKTLCKTHGVPTYSDKDLCA
CLLALNVRQILGLEFKVEKGIRQIHLIKIPKKPGDDLNISQEDQAVHNLQ
NTQAQLLKQLEDLEEEIKVNDDKVRQYMKENKRQMAKTYLRKRHLLEKNH
ERRSLALHNIESLLSSVDEAQNSGVVLDAYKIGSNTLKKVLSNSGLKYDN
VDEVLADVRDTLDQHREVQDIMSNSVVENASQEDDQLEQELRELAGESAP
ATFSPHINNNLRAEVVITDEEMIAMLQDLEVEDGTVSQSSVKSVKTAI*

BS05423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 448 CG5498-PB 1..448 1..448 2297 100 Plus
shrb-PA 226 CG8055-PA 20..171 244..398 177 31 Plus
Vps20-PC 212 CG4071-PC 17..180 239..400 156 25.9 Plus
Vps20-PA 212 CG4071-PA 17..180 239..400 156 25.9 Plus