Clone Sequence Records
BS05423.3prime Sequence
926 bp (874 high quality bases) assembled on 2005-12-02
> BS05423.3prime
ATGGTCTAGAAAGCTTTTATATCGCAGTTTTCACGGATTTTACACTGGAT
TGCGATACAGTACCATCCTCCACCTCAAGATCCTGCAGCATGGCAATCAT
CTCCTCGTCCGTAATCACAACCTCCGCCCTTAGGTTGTTATTAATATGTG
GACTAAACGTAGCCGGCGCAGATTCTCCAGCCAGTTCACGCAATTCCTGC
TCAAGTTGATCATCTTCCTGGCTCGCGTTCTCCACAACGCTATTGGACAT
TATGTCCTGAACTTCCCGATGCTGGTCGAGCGTGTCCCGCACATCGGCCA
ATACTTCGTCGACATTGTCGTACTTCAATCCAGAATTCGAGAGAACCTTC
TTCAAGGTATTTGATCCGATCTTGTAGGCATCCAGAACAACGCCACTGTT
CTGGGCCTCATCCACACTGGACAGAAGAGATTCGATGTTGTGCAGGGCAA
GACTGCGACGTTCATGATTCTTTTCCAGGAGATGCCTTTTTCGTAGATAG
GTTTTTGCCATTTGCCGTTTGTTCTCCTTCATGTACTGGCGCACTTTGTC
ATCGTTCACCTTGATCTCCTCCTCTAGGTCCTCCAACTGCTTGAGTAACT
GAGCTTGGGTATTCTGAAGATTGTGGACGGCCTGGTCTTCTTGGCTTATA
TTAAGATCGTCGCCAGGTTTTTTTGGTATTTTGATCAAGTGAATTTGGCG
TATGCCTTTTTCTACTTTAAATTCTAGGCCCAAGATTTGACGAACATTTA
AGGCCAACAGGCAAGCGCATAGATCTTTGTCTGAGTAAGTGGGAACTCCG
TGAGTCTTACAAAGCGTTTTCAAAGCATTAAAGTGCAGTAGTTTTCCAGT
GTTTTCCGACAGGACTTTTTCGGCGATGAGATCGCAAGTGTTGTTTAAGG
CATCTAGGTGAATCCATTCAATAAAG
BS05423.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-PB | 1347 | CG5498-RB | 442..1347 | 922..17 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-RB | 1523 | CG5498-RB | 528..1434 | 922..16 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20382494..20382941 | 16..463 | 2240 | 100 | Plus |
3L | 28110227 | 3L | 20383281..20383500 | 673..892 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 20383010..20383219 | 463..672 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:15:12 has no hits.
BS05423.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:49 Download gff for
BS05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-PB | 437..1347 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:08 Download gff for
BS05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-PB | 437..1347 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:12:31 Download gff for
BS05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 523..1438 | 11..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:03 Download gff for
BS05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 523..1438 | 11..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:03 Download gff for
BS05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20382490..20382940 | 11..462 | 99 | <- | Plus |
3L | 20383010..20383219 | 463..672 | 100 | <- | Plus |
3L | 20383281..20383500 | 673..892 | 100 | <- | Plus |
3L | 20383553..20383587 | 893..926 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:12:31 Download gff for
BS05423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20375590..20376040 | 11..462 | 99 | <- | Plus |
arm_3L | 20376110..20376319 | 463..672 | 100 | <- | Plus |
arm_3L | 20376381..20376600 | 673..892 | 100 | <- | Plus |
arm_3L | 20376653..20376687 | 893..926 | 97 | | Plus |
BS05423.5prime Sequence
870 bp (813 high quality bases) assembled on 2005-12-02
> BS05423.5prime
GAAGTTATCAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAA
CCGACCACTTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAG
GTGCAGTTCGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGA
CGCAAAAATGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCA
GCGGACGACCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGG
GGTGACCAACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCA
GAGGAAGCAGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATT
CCTGGGGTGGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGG
AGCTGGTCGAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTC
CGCTTTAATTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATC
TCATCGCCGAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTT
AATGCTTTGAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGA
CAAAGATCTATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGG
GCCTAGAATTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAA
ATACCAAAAAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGC
CGTCCACAATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGG
ACCTAGAGGAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTACATG
AAGGAGAACAAACGGCAAAT
BS05423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-PB | 1347 | CG5498-RB | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-RB | 1523 | CG5498-RB | 87..940 | 17..870 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20383553..20384023 | 487..17 | 2355 | 100 | Minus |
3L | 28110227 | 3L | 20383281..20383500 | 707..488 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 20383057..20383219 | 870..708 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:30:16 has no hits.
BS05423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:50 Download gff for
BS05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-PB | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:09 Download gff for
BS05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-PB | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:25:34 Download gff for
BS05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 87..940 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:09:07 Download gff for
BS05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 87..940 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:09:07 Download gff for
BS05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20383057..20383219 | 708..870 | 100 | <- | Minus |
3L | 20383281..20383500 | 488..707 | 100 | <- | Minus |
3L | 20383553..20384023 | 17..487 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:25:34 Download gff for
BS05423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20376157..20376319 | 708..870 | 100 | <- | Minus |
arm_3L | 20376381..20376600 | 488..707 | 100 | <- | Minus |
arm_3L | 20376653..20377123 | 17..487 | 100 | | Minus |
BS05423.complete Sequence
1379 bp (1379 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635108
> BS05423.complete
GAAGTTATCAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAA
CCGACCACTTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAG
GTGCAGTTCGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGA
CGCAAAAATGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCA
GCGGACGACCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGG
GGTGACCAACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCA
GAGGAAGCAGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATT
CCTGGGGTGGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGG
AGCTGGTCGAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTC
CGCTTTAATTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATC
TCATCGCCGAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTT
AATGCTTTGAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGA
CAAAGATCTATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGG
GCCTAGAATTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAA
ATACCAAAAAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGC
CGTCCACAATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGG
ACCTAGAGGAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTACATG
AAGGAGAACAAACGGCAAATGGCAAAAACCTATCTACGAAAAAGGCATCT
CCTGGAAAAGAATCATGAACGTCGCAGTCTTGCCCTGCACAACATCGAAT
CTCTTCTGTCCAGTGTGGATGAGGCCCAGAACAGTGGCGTTGTTCTGGAT
GCCTACAAGATCGGATCAAATACCTTGAAGAAGGTTCTCTCGAATTCTGG
ATTGAAGTACGACAATGTCGACGAAGTATTGGCCGATGTGCGGGACACGC
TCGACCAGCATCGGGAAGTTCAGGACATAATGTCCAATAGCGTTGTGGAG
AACGCGAGCCAGGAAGATGATCAACTTGAGCAGGAATTGCGTGAACTGGC
TGGAGAATCTGCGCCGGCTACGTTTAGTCCACATATTAATAACAACCTAA
GGGCGGAGGTTGTGATTACGGACGAGGAGATGATTGCCATGCTGCAGGAT
CTTGAGGTGGAGGATGGTACTGTATCGCAATCCAGTGTAAAATCCGTGAA
AACTGCGATATAAAAGCTTTCTAGACCAT
BS05423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-RB | 1347 | CG5498-PB | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-RB | 1523 | CG5498-RB | 87..1434 | 17..1364 | 6740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20383553..20384023 | 487..17 | 2355 | 100 | Minus |
3L | 28110227 | 3L | 20382494..20382941 | 1364..917 | 2240 | 100 | Minus |
3L | 28110227 | 3L | 20383281..20383500 | 707..488 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 20383010..20383219 | 917..708 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:32:53 has no hits.
BS05423.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:31 Download gff for
BS05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:31 Download gff for
BS05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 72..1423 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:45 Download gff for
BS05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 87..1431 | 17..1361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:31 Download gff for
BS05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 72..1423 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:30 Download gff for
BS05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5498-RB | 87..1431 | 17..1361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:30 Download gff for
BS05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20382497..20382940 | 918..1361 | 100 | <- | Minus |
3L | 20383010..20383219 | 708..917 | 100 | <- | Minus |
3L | 20383281..20383500 | 488..707 | 100 | <- | Minus |
3L | 20383553..20384023 | 17..487 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:45 Download gff for
BS05423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20375597..20376040 | 918..1361 | 100 | <- | Minus |
arm_3L | 20376110..20376319 | 708..917 | 100 | <- | Minus |
arm_3L | 20376381..20376600 | 488..707 | 100 | <- | Minus |
arm_3L | 20376653..20377123 | 17..487 | 100 | | Minus |
BS05423.pep Sequence
Translation from 16 to 1362
> BS05423.pep
MGLGSGDRVNETDHFSFPASWQDNGRMQVQFAMFRSRHLDAEGYDAKMNF
WMDLIAKYLKFSGRPIFSLRDLQLLFMRGDQLPACLDTVISEMQQRKQIR
SRSEFEYDPANSWGGWLVNSLVKRPLSWSWSKIKHSVVTEDLEASALIEW
IHLDALNNTCDLIAEKVLSENTGKLLHFNALKTLCKTHGVPTYSDKDLCA
CLLALNVRQILGLEFKVEKGIRQIHLIKIPKKPGDDLNISQEDQAVHNLQ
NTQAQLLKQLEDLEEEIKVNDDKVRQYMKENKRQMAKTYLRKRHLLEKNH
ERRSLALHNIESLLSSVDEAQNSGVVLDAYKIGSNTLKKVLSNSGLKYDN
VDEVLADVRDTLDQHREVQDIMSNSVVENASQEDDQLEQELRELAGESAP
ATFSPHINNNLRAEVVITDEEMIAMLQDLEVEDGTVSQSSVKSVKTAI*
BS05423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5498-PB | 448 | CG5498-PB | 1..448 | 1..448 | 2297 | 100 | Plus |
shrb-PA | 226 | CG8055-PA | 20..171 | 244..398 | 177 | 31 | Plus |
Vps20-PC | 212 | CG4071-PC | 17..180 | 239..400 | 156 | 25.9 | Plus |
Vps20-PA | 212 | CG4071-PA | 17..180 | 239..400 | 156 | 25.9 | Plus |