Clone Sequence Records
BS05424.3prime Sequence
839 bp (723 high quality bases) assembled on 2005-12-02
> BS05424.3prime
ATGGTCTAGAAAGCTTCTATTCGATCTTGATGCGGCGACCATATCGCCAG
GCCAGTCGCACCAGATCTCGATGAGCCAACGCCCAGGACAGAAGGCAGGC
GAGCCCAGCCAGGACACCCACGCCCAGATGTGTGGCAAGGTCAGAACTTT
GGTACCAATAACAGACGATGCCGGCCAGGAAGAGCGTGCATCCAAAGAGT
TTTCCCGGCCAGAGGCCCAGCAACGGATCCAGCGACAGGGGCCGATACTG
ATGCCTGATGTAGTAGGTGCTGTACAGAATCCTGCTCAGCATATTAATGC
AGTTGGCGAAGATGAAGCCCACCGGACCAAAGATCCCCGTCAAAATGTAG
GAGAGCACCAGGAAGCTGACCGAAAAGATGGCCATCAGATAGTTGTACTT
GTCGATATCTCGACTTGTGTTCGTGGCGAACATATAGCCCTCGCTGATCC
CGTTCACCGCCAGCAGATAGATCGCAAGGCAGTGCCACTGCAAGAGGCTC
TGCGGCAATCCGCCAGCCACGAAATCAGGACCGCCGTAAAGCAGCAGCAC
TGGGTACGAGTAGCTCTGTCCAAAGGTGAAGGCGATCAGGCCAATGGAGC
TCACACCCAAGAGCAGATTATTCAGGACACTGCTCGCCTGACGGACGCGC
TCCTGCGGCTGCTTGGCCAGCTTGATGTCCCGGGATAGCGTCTGCGTGAA
GTAAAAGTACGAACTGTCCTCGATGGGTCGGAAGATGAAGCGGGCCGCCA
TGCTGCCCAAATTGTTGACCACATCGTAGGTGGCCTGCTCCCCGAAGCTC
AGCACCGGCGACACGGACATCACGTACTTCTCGCCCTCG
BS05424.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-PA | 1671 | CG3149-RA | 849..1671 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-RA | 2020 | CG3149-RA | 989..1811 | 839..17 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5693361..5694045 | 155..839 | 3425 | 100 | Plus |
| X | 23542271 | X | 5693154..5693292 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:12:49 has no hits.
BS05424.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:51 Download gff for
BS05424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-PA | 849..1671 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:10 Download gff for
BS05424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-PA | 849..1671 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:19 Download gff for
BS05424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 989..1811 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:57 Download gff for
BS05424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 989..1811 | 17..839 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:57 Download gff for
BS05424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5693154..5693291 | 17..154 | 100 | <- | Plus |
| X | 5693361..5694045 | 155..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:19 Download gff for
BS05424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5587187..5587324 | 17..154 | 100 | <- | Plus |
| arm_X | 5587394..5588078 | 155..839 | 100 | | Plus |
BS05424.5prime Sequence
762 bp (646 high quality bases) assembled on 2005-12-02
> BS05424.5prime
GAAGTTATCAGTCGACATGGCGCGCAATGTGCTCGAGAGCAGCCTGCTGG
GCGCCGGCTTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTC
GGCATCAACGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCAT
TATGAATGTCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCC
GCGAGGCCATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGAT
CGCTGCTCCTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCAT
TTGCGCTGTTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGT
CGGCGGTGGACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCC
GTGGCCTTTTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGT
CGCCCAGGTCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGC
ACATCCTGGTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGC
AGTGCGGCAATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGAC
CATTGTCCTGNGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCA
GGATTTCGTGACCCAGCAAGCGAAAAGAAACCAGTGGCTCCAAAAGCCTG
GCAGGTCTCACTGTACGAGCACATGGATGACTTCCCTTTCAGCAGCTGAG
CGACTTCCTGCC
BS05424.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-PA | 1671 | CG3149-RA | 1..634 | 17..650 | 3151 | 99.8 | Plus |
| CG3149-PA | 1671 | CG3149-RA | 659..722 | 673..736 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-RA | 2020 | CG3149-RA | 141..889 | 17..762 | 3629 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5694145..5694622 | 762..288 | 2184 | 98.5 | Minus |
| X | 23542271 | X | 5694691..5694908 | 292..75 | 1090 | 100 | Minus |
| X | 23542271 | X | 5695006..5695065 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:59:09 has no hits.
BS05424.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:52 Download gff for
BS05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-PA | 1..749 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:12 Download gff for
BS05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-PA | 1..749 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:26 Download gff for
BS05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 136..889 | 11..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:44 Download gff for
BS05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 136..889 | 11..762 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:44 Download gff for
BS05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5694145..5694618 | 292..762 | 98 | <- | Minus |
| X | 5694692..5694906 | 77..291 | 100 | <- | Minus |
| X | 5695006..5695070 | 11..76 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:26 Download gff for
BS05424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5588178..5588651 | 292..762 | 98 | <- | Minus |
| arm_X | 5588725..5588939 | 77..291 | 100 | <- | Minus |
| arm_X | 5589039..5589103 | 11..76 | 96 | | Minus |
BS05424.complete Sequence
1703 bp assembled on 2009-08-24
GenBank Submission: KX797657
> BS05424.complete
GAAGTTATCAGTCGACATGGCGCGCAATGTGCTCGAGAGCAGCCTGCTGG
GCGCCGGCTTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTC
GGCATCAACGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCAT
TATGAATGTCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCC
GCGAGGCCATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGAT
CGCTGCTCCTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCAT
TTGCGCTGTTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGT
CGGCGGTGGACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCC
GTGGCCTTTTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGT
CGCCCAGGTCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGC
ACATCCTGGTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGC
AGTGCGGCAATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGAC
CATTGTCCTGGGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCA
AGGATTTCGTGACCCAGCAGGCGAAAAAGAAACCAGTGGCTCCAAAAGCC
TGGCAGGTCTCACTGTACGAGCACATGGATGACTTCCCCTTCAAGCAGCT
GAGCGACTTCCTGCCCGGCGTGATGTTCAATCCAAATGGAAAGCATTTCA
ACCGGGAACTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGGCGTGCTG
AAGCAAATCCTCACCGAGGGCGAGAAGTACGTGATGTCCGTGTCGCCGGT
GCTGAGCTTCGGGGAGCAGGCCACCTACGATGTGGTCAACAATTTGGGCA
GCATGGCGGCCCGCTTCATCTTCCGACCCATCGAGGACAGTTCGTACTTT
TACTTCACGCAGACGCTATCCCGGGACATCAAGCTGGCCAAGCAGCCGCA
GGAGCGCGTCCGTCAGGCGAGCAGTGTCCTGAATAATCTGCTCTTGGGTG
TGAGCTCCATTGGCCTGATCGCCTTCACCTTTGGACAGAGCTACTCGTAC
CCAGTGCTGCTGCTTTACGGCGGTCCTGATTTCGTGGCTGGCGGATTGCC
GCAGAGCCTCTTGCAGTGGCACTGCCTTGCGATCTATCTGCTGGCGGTGA
ACGGGATCAGCGAGGGCTATATGTTCGCCACGAACACAAGTCGAGATATC
GACAAGTACAACTATCTGATGGCCATCTTTTCGGTCAGCTTCCTGGTGCT
CTCCTACATTTTGACGGGGATCTTTGGTCCGGTGGGCTTCATCTTCGCCA
ACTGCATTAATATGCTGAGCAGGATTCTGTACAGCACCTACTACATCAGG
CATCAGTATCGGCCCCTGTCGCTGGATCCGTTGCTGGGCCTCTGGCCGGG
AAAACTCTTTGGATGCACGCTCTTCCTGGCCGGCATCGTCTGTTATTGGT
ACCAAAGTTCTGACCTTGCCACACATCTGGGCGTGGGTGTCCTGGCTGGG
CTCGCCTGCCTTCTGTCCTGGGCGTTGGCTCATCGAGATCTGGTGCGACT
GGCCTGGCGATATGGTCGCCGCATCAAGATCGAATAGAAGCTTTCTAGAC
CAT
BS05424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-RA | 1671 | CG3149-PA | 1..1671 | 17..1687 | 8355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-RA | 2020 | CG3149-RA | 141..1811 | 17..1687 | 8355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5693361..5694622 | 1549..288 | 6295 | 99.9 | Minus |
| X | 23542271 | X | 5694691..5694908 | 292..75 | 1090 | 100 | Minus |
| X | 23542271 | X | 5693154..5693292 | 1687..1549 | 695 | 100 | Minus |
| X | 23542271 | X | 5695006..5695065 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:27:57 has no hits.
BS05424.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:38 Download gff for
BS05424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 142..1812 | 17..1687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:24 Download gff for
BS05424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 141..1811 | 17..1687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:09 Download gff for
BS05424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 141..1811 | 17..1687 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:09 Download gff for
BS05424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5693154..5693291 | 1550..1687 | 100 | <- | Minus |
| X | 5693361..5694618 | 292..1549 | 100 | <- | Minus |
| X | 5694692..5694906 | 77..291 | 100 | <- | Minus |
| X | 5695006..5695065 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:24 Download gff for
BS05424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5587187..5587324 | 1550..1687 | 100 | <- | Minus |
| arm_X | 5587394..5588651 | 292..1549 | 100 | <- | Minus |
| arm_X | 5588725..5588939 | 77..291 | 100 | <- | Minus |
| arm_X | 5589039..5589098 | 17..76 | 100 | | Minus |
BS05424.pep Sequence
Translation from 16 to 1686
> BS05424.pep
MARNVLESSLLGAGFSIIFQILCRILTFGINAYIVRHVGREVLGIMNVRL
LLLESTLLFLSREAINRAALSANAQQGDRCSWAQLINQMWLTVPICAVLC
APCLYIWLNWLSAVDAIYASQYEFACYAVAFSCVLELMAESAVFVAQVFC
FVKLKILLNTLHILVRSAIFLWIVTGDRSAAINAFAIAQLSSAVTIVLGQ
YGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQLSDFLP
GVMFNPNGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMSVSPVLSFGE
QATYDVVNNLGSMAARFIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQ
ASSVLNNLLLGVSSIGLIAFTFGQSYSYPVLLLYGGPDFVAGGLPQSLLQ
WHCLAIYLLAVNGISEGYMFATNTSRDIDKYNYLMAIFSVSFLVLSYILT
GIFGPVGFIFANCINMLSRILYSTYYIRHQYRPLSLDPLLGLWPGKLFGC
TLFLAGIVCYWYQSSDLATHLGVGVLAGLACLLSWALAHRDLVRLAWRYG
RRIKIE*
BS05424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-PA | 556 | CG3149-PA | 1..556 | 1..556 | 2871 | 100 | Plus |
