Clone Sequence Records
BS05425.3prime Sequence
779 bp (748 high quality bases) assembled on 2005-12-02
> BS05425.3prime
ATGGTCTAGAAAGCTTTCACATGACCATATTTTGACGTACCCAGTCAATG
TGCCGTGCAACATCGCAATAGATAACATACTTGCTAAGGTCGCAAATCTC
TCCGTGGCGAGGCGATAAAGAGACCACACCACGAACGTACCATCGATTGT
TACGCAGGACGATCAGAGCAGATCCCGAGTCTCCGAAGCAGGGACCATGT
GATTCTGAATTGCCGGCACAGACGGTCCGCCGCGTGATGAAGTCCTCCGC
CCGCTTCATCTCCTTGAGACACTGATCCCGGGGCACCAATCGAACACTCA
CTGTCTTGGGAAACCGCGTCTTCTGGGCACTCCTGTCGTAGCCCCAACCG
GCTACTGCTCCAGTATCGCCCTCATTCGGTGGCAATCCCATATTGGAGCC
CCAAAGGCAGAGGGGTCGAATGTACTTGGTGTACACCATCGGAGAGGTCA
GCACCAGCAGACCAACGTCCGCATCCGGAACTGGATTGCCCTCGTAGGCG
GACGGAGTCAGCACGCTGGTCACGCTAACCAGGGAGGCTCCATTCTCAGG
ATTCTCGTTGCGATCATGCCTGCCCAAATAGACCCAAAGCTGGCTGGCGC
TCTTTCCATAAATGCAGTGAGCTGCCGTGATCACAGTCCGTTTGGAGATA
ACCGACACCACGCATTTGTATGTAGCCGTGCCAACACCTTCGTAAAGGGC
CGCGAGCCAGGGGTACTGACCGCGGGTCACCAGGTCGCCTCCGATTTGAA
GAGGCGAAAAGCCCTCAACGCCGCATTCC
BS05425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-PA | 1320 | CG9631-RA | 558..1320 | 779..17 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1449 | CG9631-RA | 604..1366 | 779..17 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14225181..14225943 | 17..779 | 3815 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:27:39 has no hits.
BS05425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:53 Download gff for
BS05425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-PA | 558..1320 | 17..779 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:13 Download gff for
BS05425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-PA | 558..1320 | 17..779 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:13:55 Download gff for
BS05425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 601..1366 | 13..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:38 Download gff for
BS05425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 604..1369 | 13..779 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:38 Download gff for
BS05425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14225178..14225943 | 13..779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:13:55 Download gff for
BS05425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10050900..10051665 | 13..779 | 99 | | Plus |
BS05425.5prime Sequence
921 bp (789 high quality bases) assembled on 2005-12-02
> BS05425.5prime
GAAGTTATCAGTCGACATGACAATCTTGTGGCTGACCTTGCTGGGCCTTT
GTCTCAATCTGAAACTCGGGTCGGCGTTGCACGTGCCGCAGCATAATTGT
GAGAGGTATTTCTCCTACTACAAAGAGGACAGTGGAGCCTACATTGGCGT
CTTCACGGCGCCACGCGCTGGTGTGAACAGCCTATCATGGGAGGTGGTTT
TCACTGCTCACGGAACTGGTGAGGCAAACACTGTGGGCTCACTCATTCCG
TATCCCAATAAGGAAAGGGCCTTTGAAAAGATACACAGCGGAGAACGTGG
CGAGGTGTTTGTGCGTTTCACGGATTTTGGAAACGAGCTGCCCAAACTTG
TCCGGGCGGAATTCAACGGCGAGGTTCTGTGTCAAAATGAGGAGTATGAT
GCCCCTTCAAGCACAATGACCCGACGCCAGTCCATGTCCACCTCAACGCC
AATTAGTCAAAAGTCAGCACCAAGAGAAATAGTGCGTCAGCGGCGTCCGC
CGCCGAGCACACCGAGCAATGACCCCAATCCTTTCCTTCCTTCAATCATG
CCCAGAATAGATTCGGACTTTGAGGAATGCGGCGTTGAGGGCTTTTCGCC
TCTTCAAATCGGAGGCGACCTGGTGACCCGCGGTCAGTACCCCTGGCTCG
CGGCCCTTTACGAAGGTGTTGGCACGGCTACATACAAATGCGTGGTGTCG
GTTATCTCCAAACGGACTGTGATCACGGCAGCTCACTGCATTTATGGAAA
GAGCGCCAGCCAGCTTTGGGTCTATTTGGGCAGGCATGATCGCAACGAGA
ATCCTGAGAATGGAGGCTCCCTGGTTAGCGTGACCAGCGTGCTGACTCCG
TCCGCCTACGAGGGCAATCAGTTCCGGATGCGGACGTTGGTCTGCTGGTG
CTGACCTCTCCGATGGTGTAC
BS05425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-PA | 1320 | CG9631-RA | 1..853 | 17..869 | 4240 | 99.8 | Plus |
| CG9631-PA | 1320 | CG9631-RA | 854..906 | 869..921 | 265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1449 | CG9631-RA | 47..952 | 17..921 | 4490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14225595..14226121 | 921..396 | 2570 | 99.6 | Minus |
| 3R | 32079331 | 3R | 14226505..14226716 | 228..17 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14226261..14226438 | 399..222 | 875 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:45:58 has no hits.
BS05425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:55 Download gff for
BS05425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-PA | 1..906 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:15 Download gff for
BS05425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-PA | 1..906 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:20 Download gff for
BS05425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 32..949 | 4..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:10 Download gff for
BS05425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 35..952 | 4..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:10 Download gff for
BS05425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14226510..14226721 | 11..223 | 98 | <- | Minus |
| 3R | 14225595..14226121 | 396..921 | 99 | <- | Minus |
| 3R | 14226265..14226436 | 224..395 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:20 Download gff for
BS05425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10051317..10051843 | 396..921 | 99 | <- | Minus |
| arm_3R | 10051987..10052158 | 224..395 | 100 | <- | Minus |
| arm_3R | 10052232..10052443 | 11..223 | 98 | <- | Minus |
BS05425.complete Sequence
1352 bp (1352 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635109
> BS05425.complete
GAAGTTATCAGTCGACATGACAATCTTGTGGCTGACCTTGCTGGGCCTTT
GTCTCAATCTGAAACTCGGGTCGGCGTTGCACGTGCCGCAGCATAATTGT
GAGAGGTATTTCTCCTACTACAAAGAGGACAGTGGAGCCTACATTGGCGT
CTTCACGGCGCCACGCGCTGGTGTGAACAGCCTATCATGGGAGGTGGTTT
TCACTGCTCACGGAACTGGTGAGGCAAACACTGTGGGCTCACTCATTCCG
TATCCCAATAAGGAAAGGGCCTTTGAAAAGATACACAGCGGAGAACGTGG
CGAGGTGTTTGTGCGTTTCACGGATTTTGGAAACGAGCTGCCCAAACTTG
TCCGGGCGGAATTCAACGGCGAGGTTCTGTGTCAAAATGAGGAGTATGAT
GCCCCTTCAAGCACAATGACCCGACGCCAGTCCATGTCCACCTCAACGCC
AATTAGTCAAAAGTCAGCACCAAGAGAAATAGTGCGTCAGCGGCGTCCGC
CGCCGAGCACACCGAGCAATGACCCCAATCCTTTCCTTCCTTCAATCATG
CCCAGAATAGATTCGGACTTTGAGGAATGCGGCGTTGAGGGCTTTTCGCC
TCTTCAAATCGGAGGCGACCTGGTGACCCGCGGTCAGTACCCCTGGCTCG
CGGCCCTTTACGAAGGTGTTGGCACGGCTACATACAAATGCGTGGTGTCG
GTTATCTCCAAACGGACTGTGATCACGGCAGCTCACTGCATTTATGGAAA
GAGCGCCAGCCAGCTTTGGGTCTATTTGGGCAGGCATGATCGCAACGAGA
ATCCTGAGAATGGAGCCTCCCTGGTTAGCGTGACCAGCGTGCTGACTCCG
TCCGCCTACGAGGGCAATCCAGTTCCGGATGCGGACGTTGGTCTGCTGGT
GCTGACCTCTCCGATGGTGTACACCAAGTACATTCGACCCCTCTGCCTTT
GGGGCTCCAATATGGGATTGCCACCGAATGAGGGCGATACTGGAGCAGTA
GCCGGTTGGGGCTACGACAGGAGTGCCCAGAAGACGCGGTTTCCCAAGAC
AGTGAGTGTTCGATTGGTGCCCCGGGATCAGTGTCTCAAGGAGATGAAGC
GGGCGGAGGACTTCATCACGCGGCGGACCGTCTGTGCCGGCAATTCAGAA
TCACATGGTCCCTGCTTCGGAGACTCGGGATCTGCTCTGATCGTCCTGCG
TAACAATCGATGGTACGTTCGTGGTGTGGTCTCTTTATCGCCTCGCCACG
GAGAGATTTGCGACCTTAGCAAGTATGTTATCTATTGCGATGTTGCACGG
CACATTGACTGGGTACGTCAAAATATGGTCATGTGAAAGCTTTCTAGACC
AT
BS05425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1320 | CG9631-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1449 | CG9631-RA | 47..1366 | 17..1336 | 6600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14225181..14226121 | 1336..396 | 4705 | 100 | Minus |
| 3R | 32079331 | 3R | 14226505..14226716 | 228..17 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14226261..14226438 | 399..222 | 875 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:10 has no hits.
BS05425.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:32 Download gff for
BS05425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:33 Download gff for
BS05425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 19..1353 | 4..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:06 Download gff for
BS05425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 44..1362 | 17..1335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:32 Download gff for
BS05425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 19..1353 | 4..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:35 Download gff for
BS05425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 47..1365 | 17..1335 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:35 Download gff for
BS05425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14225182..14226121 | 396..1335 | 100 | <- | Minus |
| 3R | 14226265..14226436 | 224..395 | 100 | <- | Minus |
| 3R | 14226510..14226716 | 17..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:06 Download gff for
BS05425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10050904..10051843 | 396..1335 | 100 | <- | Minus |
| arm_3R | 10051987..10052158 | 224..395 | 100 | <- | Minus |
| arm_3R | 10052232..10052438 | 17..223 | 100 | | Minus |
BS05425.pep Sequence
Translation from 16 to 1335
> BS05425.pep
MTILWLTLLGLCLNLKLGSALHVPQHNCERYFSYYKEDSGAYIGVFTAPR
AGVNSLSWEVVFTAHGTGEANTVGSLIPYPNKERAFEKIHSGERGEVFVR
FTDFGNELPKLVRAEFNGEVLCQNEEYDAPSSTMTRRQSMSTSTPISQKS
APREIVRQRRPPPSTPSNDPNPFLPSIMPRIDSDFEECGVEGFSPLQIGG
DLVTRGQYPWLAALYEGVGTATYKCVVSVISKRTVITAAHCIYGKSASQL
WVYLGRHDRNENPENGASLVSVTSVLTPSAYEGNPVPDADVGLLVLTSPM
VYTKYIRPLCLWGSNMGLPPNEGDTGAVAGWGYDRSAQKTRFPKTVSVRL
VPRDQCLKEMKRAEDFITRRTVCAGNSESHGPCFGDSGSALIVLRNNRWY
VRGVVSLSPRHGEICDLSKYVIYCDVARHIDWVRQNMVM*
BS05425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-PA | 439 | CG9631-PA | 1..439 | 1..439 | 2346 | 100 | Plus |
| Sp212-PC | 516 | CG33329-PC | 197..515 | 129..437 | 481 | 32.9 | Plus |
| CG9649-PA | 504 | CG9649-PA | 4..502 | 6..437 | 457 | 29.6 | Plus |
| CG31326-PA | 520 | CG31326-PA | 170..518 | 103..437 | 337 | 29.3 | Plus |
| gd-PC | 528 | CG1505-PC | 254..523 | 203..433 | 317 | 29.5 | Plus |
| Sp212-PC | 516 | CG33329-PC | 3..138 | 6..143 | 165 | 31.2 | Plus |
