Clone Sequence Records
BS05427.3prime Sequence
864 bp (742 high quality bases) assembled on 2005-12-02
> BS05427.3prime
ATGGTCTAGAAAGCTTTCAATCGAATGTTGTCCAGTTGTTCATGCCCTTT
CCGGTGGTGAGCTGCTGCGACTTCTCCGTTCCGTTGGCGTTCAGGGTGAA
CTGGTCCAGGCCGTACTTGCGGAGCAGCTCGAAGTCGTCGTCGGGCTTGG
CGGCAATGGTGTTGCGCTGGATCTGCGGCGGTGGGTGCATCGGTGGCGTC
CGTCCCGTCACAGCTGCCACCGTGGCCATGTGCTTGGGCGCGAAATACGG
GTACAGTGGATTGCTGACGCTACTGGCCACCACACTGCTGTTGACGCCAG
CGGGCAGTGTGCTGCACTTCTTGGCAAATGCCGTGCTGAGCGGCGGCAAC
GGACGAGCATTCTGATTGAGCGGATCGAAGTCCTCCAGGTCGAAGCTGGT
GTTGTTGCTATCGTCCAGCGATATCAGATCATTCATGCTGTCCTCCAGTG
GCTGCTGTTGCTCTCTCTTGGCCCGCGGTGTCGGAATGGGCGGATCAGAC
ACATTAAGATGCGAGAACGTCGACGCCGCCGTCACAAACGATGCGCCCGA
GGAGGATGAGGTCGCCGATGACGAGGATGCATTCGAGCTGCGTACAGAAT
CATTTCCGGGCTCGTCCTTCCAGCAGTTACGTTCCAGTTTGCTAATCTCT
GCACTGACGGCTGCAGCCGTGGCCGCCACAATCGCATTCGAGCTGCCCTG
CCTCCGGGGCGGAATCGGTGGAGATTGTACGTCCGGCGGACTATCAAAGC
TGCTGGAATCGGCGGTAGGCAGGGGCTGACGCGGTCTGGTGGGCGTGGAG
GTGTGCCTTGGCGGCTTAGACTCCACGTGCGGATGCGCGGCATAGGGATG
ATTGTAATAGGAGG
BS05427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-PA | 2727 | CG18659-RA | 1880..2727 | 864..17 | 4215 | 99.8 | Minus |
| CG18659-PB | 1500 | CG18659-RB | 653..1500 | 864..17 | 4215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RH | 3759 | CG18659-RH | 2514..3362 | 864..16 | 4230 | 99.9 | Minus |
| CG18659-RF | 3816 | CG18659-RF | 2571..3419 | 864..16 | 4230 | 99.9 | Minus |
| CG18659-RE | 3655 | CG18659-RE | 2410..3258 | 864..16 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9123701..9124147 | 16..462 | 2235 | 100 | Plus |
| 2R | 25286936 | 2R | 9124734..9125147 | 451..864 | 2010 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:12:10 has no hits.
BS05427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:56 Download gff for
BS05427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-PA | 1880..2727 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:16 Download gff for
BS05427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-PB | 653..1500 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:15:23 Download gff for
BS05427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 2410..3258 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:35 Download gff for
BS05427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 2410..3258 | 16..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:35 Download gff for
BS05427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9123701..9124145 | 16..460 | 100 | <- | Plus |
| 2R | 9124744..9125147 | 461..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:15:23 Download gff for
BS05427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5011206..5011650 | 16..460 | 100 | <- | Plus |
| arm_2R | 5012249..5012652 | 461..864 | 99 | | Plus |
BS05427.5prime Sequence
822 bp (744 high quality bases) assembled on 2005-12-02
> BS05427.5prime
GAAGTTATCAGTCGACATGTTCATTCCCACACACCTTATTTGCAATACTA
ATCCGGCTGTAAAGTCTGCCGTCAAATCGGTTAAGGAGGGCTCGCGGGGC
ATGAAGACCGCCTATAAGGGATTCAAGACAAAGCTGCGCGAGAACGGAAA
CCAGTTTGGTGGCACGCACTTCCACTTTGGACTTGGCTCCCCGAATCATT
CGGATCGTCCTGACGGCACCAGCGGAGGATACGTTCGTGGTGGCAAGGCC
ATCGGGGCTGCACACCACTCGGCGCCCAGTTCTCCAGTGACCAGCAAGCG
TCTTGATGGAATTGCCTCCGTCACGGGAAGCAGCGGCAGCGGTGGATCCG
GCGCCAGGGAGCCGCGGGAGTTCCTGCGACGCGGTCCCGTCCCGCTGGCC
ATGTCTAGCTCGAGCAGCCACATTCAGCCGAACGGCCATGCGTACGGTGC
GAGTGCTGGTGCTCATTATGGTCATCATCTCGCTGCGTCTCCTGCTGTTA
GCTCGGCGAGCTCGCTCTGCTCATCTTCGGAGATGAACCTGTCGCAGGAA
CTGCAGAACCATCCGCTTTTCAAGACGCCGGCAGTGGACCGCAGCCTTAA
GCCAAACGCAGAGCACAGGCGAGGAGCAGCACCGCCAGCCCGTCCACCGC
CACCGCAATCTACGCCCGCCTCCTACTACAATCATCCCTATGCCGCGCAT
CCGCACGTGGAGTCTAAGCCGCCAAGGCACACCTCCACGCCCACCAGACC
GCGTCAGCCCCTGCCTACCGCCGATTCCAGCAGCTTTGATAGTCCGCCGG
ACGTACAATCTCCACCGATTCC
BS05427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-PB | 1500 | CG18659-RB | 1..806 | 17..822 | 4030 | 100 | Plus |
| CG18659-PA | 2727 | CG18659-RA | 1258..2033 | 47..822 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RE | 3655 | CG18659-RE | 1758..2563 | 17..822 | 4030 | 100 | Plus |
| CG18659-RI | 3513 | CG18659-RI | 1648..2427 | 43..822 | 3885 | 99.9 | Plus |
| CG18659-RA | 3519 | CG18659-RA | 1648..2427 | 43..822 | 3885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9125551..9126067 | 595..79 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 9124994..9125220 | 822..596 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:45:37 has no hits.
BS05427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:57 Download gff for
BS05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-PB | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:18 Download gff for
BS05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-PB | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:17 Download gff for
BS05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1752..2563 | 10..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:07 Download gff for
BS05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1752..2563 | 10..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:07 Download gff for
BS05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9124994..9125220 | 596..822 | 100 | <- | Minus |
| 2R | 9125551..9126066 | 80..595 | 100 | <- | Minus |
| 2R | 9126181..9126213 | 47..79 | 100 | <- | Minus |
| 2R | 9127027..9127062 | 10..46 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:17 Download gff for
BS05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5012499..5012725 | 596..822 | 100 | <- | Minus |
| arm_2R | 5013056..5013571 | 80..595 | 100 | <- | Minus |
| arm_2R | 5013686..5013718 | 47..79 | 100 | <- | Minus |
| arm_2R | 5014532..5014567 | 10..46 | 94 | | Minus |
BS05427.complete Sequence
1532 bp (1532 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635110
> BS05427.complete
GAAGTTATCAGTCGACATGTTCATTCCCACACACCTTATTTGCAATACTA
ATCCGGCTGTAAAGTCTGCCGTCAAATCGGTTAAGGAGGGCTCGCGGGGC
ATGAAGACCGCCTATAAGGGATTCAAGACAAAGCTGCGCGAGAACGGAAA
CCAGTTTGGTGGCACGCACTTCCACTTTGGACTTGGCTCCCCGAATCATT
CGGATCGTCCTGACGGCACCAGCGGAGGATACGTTCGTGGTGGCAAGGCC
ATCGGGGCTGCACACCACTCGGCGCCCAGTTCTCCAGTGACCAGCAAGCG
TCTTGATGGAATTGCCTCCGTCACGGGAAGCAGCGGCAGCGGTGGATCCG
GCGCCAGGGAGCCGCGGGAGTTCCTGCGACGCGGTCCCGTCCCGCTGGCC
ATGTCTAGCTCGAGCAGCCACATTCAGCCGAACGGCCATGCGTACGGTGC
GAGTGCTGGTGCTCATTATGGTCATCATCTCGCTGCGTCTCCTGCTGTTA
GCTCGGCGAGCTCGCTCTGCTCATCTTCGGAGATGAACCTGTCGCAGGAA
CTGCAGAACCATCCGCTTTTCAAGACGCCGGCAGTGGACCGCAGCCTTAA
GCCAAACGCAGAGCACAGGCGAGGAGCAGCACCGCCAGCCCGTCCACCGC
CACCGCAATCTACGCCCGCCTCCTACTACAATCATCCCTATGCCGCGCAT
CCGCACGTGGAGTCTAAGCCGCCAAGGCACACCTCCACGCCCACCAGACC
GCGTCAGCCCCTGCCTACCGCCGATTCCAGCAGCTTTGATAGTCCGCCGG
ACGTACAATCTCCACCGATTCCGCCCCGGAGGCAGGGCAGCTCGAATGCG
ATTGTGGCGGCCACGGCTGCAGCCGTCAGTGCAGAGATTAGCAAACTGGA
ACGTAACTGCTGGAAGGACGAGCCCGGAAATGATTCTGTACGCAGCTCGA
ATGCATCCTCGTCATCGGCGACCTCATCCTCCTCGGGCGCATCGTTTGTG
ACGGCGGCGTCGACGTTCTCGCATCTTAATGTGTCTGATCCGCCCATTCC
GACACCGCGGGCCAAGAGAGAGCAACAGCAGCCACTGGAGGACAGCATGA
ATGATCTGATATCGCTGGACGATAGCAACAACACCAGCTTCGACCTGGAG
GACTTCGATCCGCTCAATCAGAATGCTCGTCCGTTGCCGCCGCTCAGCAC
GGCATTTGCCAAGAAGTGCAGCACACTGCCCGCTGGCGTCAACAGCAGTG
TGGTGGCCAGTAGCGTCAGCAATCCACTGTACCCGTATTTCGCGCCCAAG
CACATGGCCACGGTGGCAGCTGTGACGGGACGGACGCCACCGATGCACCC
ACCGCCGCAGATCCAGCGCAACACCATTGCCGCCAAGCCCGACGACGACT
TCGAGCTGCTCCGCAAGTACGGCCTGGACCAGTTCACCCTGAACGCCAAC
GGAACGGAGAAGTCGCAGCAGCTCACCACCGGAAAGGGCATGAACAACTG
GACAACATTCGATTGAAAGCTTTCTAGACCAT
BS05427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RA | 2727 | CG18659-PA | 1254..2727 | 43..1516 | 7355 | 99.9 | Plus |
| CG18659-RI | 2721 | CG18659-PI | 1254..2721 | 43..1516 | 7230 | 99.5 | Plus |
| CG18659-RC | 2694 | CG18659-PC | 1257..2694 | 79..1516 | 7190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RE | 3655 | CG18659-RE | 1758..3258 | 17..1517 | 7505 | 100 | Plus |
| CG18659-RA | 3519 | CG18659-RA | 1648..3122 | 43..1517 | 7360 | 99.9 | Plus |
| CG18659-RI | 3513 | CG18659-RI | 1648..3116 | 43..1517 | 7235 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9125551..9126067 | 595..79 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 9124734..9125220 | 1082..596 | 2390 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9123701..9124147 | 1517..1071 | 2235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:14:39 has no hits.
BS05427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:33 Download gff for
BS05427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RB | 1..1500 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:34 Download gff for
BS05427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RB | 626..2132 | 10..1517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:40 Download gff for
BS05427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1763..3256 | 22..1515 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:33 Download gff for
BS05427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RB | 626..2132 | 10..1517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:29 Download gff for
BS05427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1763..3256 | 22..1515 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:29 Download gff for
BS05427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9123703..9124145 | 1073..1515 | 100 | <- | Minus |
| 2R | 9124744..9125220 | 596..1072 | 100 | <- | Minus |
| 2R | 9125551..9126066 | 80..595 | 100 | <- | Minus |
| 2R | 9126181..9126213 | 47..79 | 100 | <- | Minus |
| 2R | 9127027..9127051 | 22..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:40 Download gff for
BS05427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5011208..5011650 | 1073..1515 | 100 | <- | Minus |
| arm_2R | 5012249..5012725 | 596..1072 | 100 | <- | Minus |
| arm_2R | 5013056..5013571 | 80..595 | 100 | <- | Minus |
| arm_2R | 5013686..5013718 | 47..79 | 100 | <- | Minus |
| arm_2R | 5014532..5014556 | 22..46 | 100 | | Minus |
BS05427.pep Sequence
Translation from 16 to 1515
> BS05427.pep
MFIPTHLICNTNPAVKSAVKSVKEGSRGMKTAYKGFKTKLRENGNQFGGT
HFHFGLGSPNHSDRPDGTSGGYVRGGKAIGAAHHSAPSSPVTSKRLDGIA
SVTGSSGSGGSGAREPREFLRRGPVPLAMSSSSSHIQPNGHAYGASAGAH
YGHHLAASPAVSSASSLCSSSEMNLSQELQNHPLFKTPAVDRSLKPNAEH
RRGAAPPARPPPPQSTPASYYNHPYAAHPHVESKPPRHTSTPTRPRQPLP
TADSSSFDSPPDVQSPPIPPRRQGSSNAIVAATAAAVSAEISKLERNCWK
DEPGNDSVRSSNASSSSATSSSSGASFVTAASTFSHLNVSDPPIPTPRAK
REQQQPLEDSMNDLISLDDSNNTSFDLEDFDPLNQNARPLPPLSTAFAKK
CSTLPAGVNSSVVASSVSNPLYPYFAPKHMATVAAVTGRTPPMHPPPQIQ
RNTIAAKPDDDFELLRKYGLDQFTLNANGTEKSQQLTTGKGMNNWTTFD*
BS05427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-PA | 908 | CG18659-PA | 420..908 | 11..499 | 2570 | 100 | Plus |
| CG18659-PI | 906 | CG18659-PI | 420..906 | 11..499 | 2547 | 99.6 | Plus |
| CG18659-PC | 897 | CG18659-PC | 413..897 | 15..499 | 2521 | 98.8 | Plus |
| CG18659-PD | 749 | CG18659-PD | 420..602 | 11..193 | 954 | 100 | Plus |
| CG18659-PF | 607 | CG18659-PF | 413..592 | 15..194 | 906 | 96.1 | Plus |
| CG18659-PD | 749 | CG18659-PD | 537..749 | 286..499 | 805 | 74.4 | Plus |
