Clone Sequence Records
BS05428.complete Sequence
2462 bp assembled on 2009-12-07
GenBank Submission: KX799449
> BS05428.complete
GAAGTTATCAGTCGACATGCCCGACACGGAAATCATCGTTACCAATGCCG
GGGAGCCCTCCACCAAGGCGAGTCTCATCGTGGTATCCAATCGGTTGCCG
TTTGTGCTTATCCGAGATCCGAAGACCGATGAGTTGGAACGCAGGGCCAG
TGCCGGTGGCCTGGTGACTGCAGTGTGCCCGGTGGTGATCAAGGGCAGTG
GTCTCTGGGTGGGCTGGTCGGGTATCCACTTGAAGGATCCTAACGAGGCC
ATTCCCGAGTCCAATCCCAACGATCAGACTCCGACTGCTGGCCTCAAGTC
CGAGCAGGTGGTGTCCGTCAACATCGATTCGAAGATCTTCGATAGCTACT
ACAACGGATGCTGCAACAAGATCTTCTGGCCACTGTTCCACTCGATGCCG
GGAAGAGCCAACTTCGGAGGCGAGCACTGGCACGACTATGTCACTGTCAA
CAAGCACTTCGCCGTGCGGACCATCGAGGCTCTGGAGAAGTGCCTGGCCA
AAAACCAGGGCAGCGAGAAGAGTCCACCGATTGTCTGGATCCACGACTAC
CATCTCATGCTGGCCGCCAATTGGGTGCGCGAGCACGCCGAGGAGAAGAA
CCTGCCCTGCCGACTGGCTTTCTTCCTGCACATCCCATTCCCGCCATGGG
ACATCTTCCGCCTGCTGCCCTGGTCCGATGAGATCCTACAGGGTATGTTG
GGTTGTGACCTGGTAGGCTTCCATATTCAGGACTATTGCCTTAACTTTGT
GGACTGCTGCCAGCGCAATCTCGGCTGCCGTGTGGACAGAAACAATCTGC
TGGTGGAACATGGCGGGCGCACCGTTCGCGTCCGCCCGCTTCCCATTGGT
ATTCCCTACGAACGCTTCGTTAATTTGGCCACGACCGCGCCCAAGGTGCT
AAAGACATCCAAGATGCAAATCATCCTGGGAGTGGACCGACTGGACTACA
CCAAGGGCCTCGTCCATCGCCTTATGGCTTTTGAGGCGCTGCTGCTGAAG
TATCCGCAGCACAAGGAGAAGGTGAGCCTGCTGCAGATCTCGGTGCCGTC
GCGAACCGATGTAAAAGAGTACCGGGAGCTGAAGGAGGAGGTGGACCAGC
TGGTGGGCCGCATCAACGGACGCTTTACCACAGCCAACTGGGCGCCCATA
CGCTACATCTACGACTATGTCAGCCAAGACGAGTTGGCTGCTTTGTACAG
GGATGCGGCTGTTTGCCTGGTAACTCCACTTCGCGATGGCATGAACCTGG
TGGCCAAGGAGTTCGTGGCCTGCCAGATCAACGAGGTGCCCGGCGTGCTG
GTCATCTCACCGTTCGCAGGAGCCGGCGAGATGATGCACGAGGCGCTGCT
CTGCAATCCGTACGAGGTGAACGAGGCCGCCGAGGTGATCCACCGAGCAC
TGACCATGCCCGAGGATGAGCGCGTCCTACGTATGGCTCGGCTGCGCCGT
CGTGAAGCCGAGTGCGATGTGAGCCACTGGATGCGTTGTTTCCTAAAGGC
GGTGGGCGCTCTGGAGATGGATGATGTGGGCACCACCATTATGCAGCCAG
TGTCCGTGGACGATTTCGATGACTACTTACTGAAATACATCGGCTATAAC
CACAAGTTGGCTCTGCTGCTGGACTACGACGGAACCTTGGCGCCCATTGC
TCCTCATCCTGATCTGGCCACGCTCTCGCCCGAAATTAAGAATGTACTAT
ATAAGCTGTCCAATCACTCGGACGTCTACGTGGCCGTCATCTCGGGTCGC
AACGTGGACAATGTCAAGAAGATGGTTGGCATCGAGGGCATAACCTATGC
GGGCAATCACGGTCTAGAGATCCTTCATCCGGACGGCAGCAAGTTCGTAC
ACCCCATGCCCATGGAGTACGAAAAGAAGGTCAGTGACCTGCTGAAGGCT
CTGCAGGATTCCGTTTGCCGCGACGGCGCTTGGGTGGAGAATAAGGGGGC
GTTGCTAACGTTCCACTACCGAGAGACGCCCAATCATCTGAGGGGAGCTA
TGGTTGACAAGGCGCGCTCCTTGATCGAGAAGTACGGCTTCAAGGCCACG
GAGGCGCATTGCGCTCTGGAAGCTCGTCCGCCGGTGCAGTGGAATAAGGG
TCGTGCCTCGATCTACATCCTGCGCACATCCTTCGGCGTGGACTGGAACG
AACGCATCAAGATTATCTATGTGGGTGACGATCTAACAGACGAGGACGCC
ATGGTGGCTCTGAAGGGTATGGCGCGAACTTTCCGTGTGACATCGTCGGA
TATTGTGAAGACCGCTGCGGATCATCGACTGCCCTCCACAGACTCCGTGT
ACACCCTGCTGAAATGGGTGGAACGACACTTCATGGGACGCAAGGCGCGC
GCCAATTCGCTGACCTACAGGCCCACCAAGGGCGACGGTGTCCAGATGCA
GATGTCCCTGGAGGTGGCCGCTTCAGCGAACAATCTGGAGGTGTGAAAGC
TTTCTAGACCAT
BS05428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tps1-RA | 2430 | CG4104-PA | 1..2430 | 17..2446 | 12150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tps1-RA | 2920 | CG4104-RA | 399..2828 | 17..2446 | 12150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4390796..4391690 | 690..1584 | 4475 | 100 | Plus |
| 2L | 23513712 | 2L | 4391756..4392378 | 1585..2207 | 3115 | 100 | Plus |
| 2L | 23513712 | 2L | 4390162..4390706 | 148..692 | 2725 | 100 | Plus |
| 2L | 23513712 | 2L | 4392446..4392686 | 2206..2446 | 1205 | 100 | Plus |
| 2L | 23513712 | 2L | 4388725..4388858 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:27:13 has no hits.
BS05428.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:10 Download gff for
BS05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 405..2833 | 17..2445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:32 Download gff for
BS05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 399..2827 | 17..2445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:00 Download gff for
BS05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 405..2833 | 17..2445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:45 Download gff for
BS05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 399..2827 | 17..2445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:45 Download gff for
BS05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4392447..4392685 | 2207..2445 | 100 | | Plus |
| 2L | 4388725..4388858 | 17..150 | 100 | -> | Plus |
| 2L | 4390165..4390705 | 151..691 | 100 | -> | Plus |
| 2L | 4390798..4391690 | 692..1584 | 100 | -> | Plus |
| 2L | 4391756..4392377 | 1585..2206 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:32 Download gff for
BS05428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4388725..4388858 | 17..150 | 100 | -> | Plus |
| arm_2L | 4390165..4390705 | 151..691 | 100 | -> | Plus |
| arm_2L | 4390798..4391690 | 692..1584 | 100 | -> | Plus |
| arm_2L | 4391756..4392377 | 1585..2206 | 100 | -> | Plus |
| arm_2L | 4392447..4392685 | 2207..2445 | 100 | | Plus |
BS05428.3prime Sequence
849 bp (800 high quality bases) assembled on 2005-12-02
> BS05428.3prime
ATGGTCTAGAAAGCTTTCACACCTCCAGATTGTTCGCTGAAGCGGCCACC
TCCAGGGACATCTGCATCTGGACACCGTCGCCCTTGGTGGGCCTGTAGGT
CAGCGAATTGGCGCGCGCCTTGCGTCCCATGAAGTGTCGTTCCACCCATT
TCAGCAGGGTGTACACGGAGTCTGTGGAGGGCAGTCGATGATCCGCAGCG
GTCTTCACAATATCCGACGATGTCACACGGAAAGTTCGCGCCATACCCTT
CAGAGCCACCATGGCGTCCTCGTCTGTTAGATCGTCACCCACATAGATAA
TCTTGATGCGTTCGTTCCAGTCCACGCCGAAGGATGTGCGCAGGATGTAG
ATCGAGGCACGACCCTTATTCCACTGCACCGGCGGACGAGCTTCCAGAGC
GCAATGCGCCTCCGTGGCCTTGAAGCCGTACTTCTCGATCAAGGAGCGCG
CCTTGTCAACCATAGCTCCCCTCAGATGATTGGGCGTCTCTCGGTAGTGG
AACGTTAGCAACGCCCCCTTATTCTCCACCCAAGCGCCGTCGCGGCAAAC
GGAATCCTGCAGAGCCTTCAGCAGGTCACTGACCTTCTTTTCGTACTCCA
TGGGCATGGGGTGTACGAACTTGCTGCCGTCCGGATGAAGGATCTCTAGA
CCGTGATTGCCCGCATAGGTTATGCCCTCGATGCCAACCATCTTCTTGAC
ATTGTCCACGTTGCGACCCGAGATGACGGCCACGTAGACGTCCGAGTGAT
TGGACAGCTTATATAGTACATTCTTAATTTCGGGCGAGAGCGTGGCCAGA
TCAGGATGAGGAGCAATGGGCGCCAAGGGTCCGTCGTAGTCCAGCAGCA
BS05428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4104-PA | 2430 | Tps1-RA | 1598..2430 | 849..17 | 4140 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tps1-RA | 2920 | CG4104-RA | 1996..2828 | 849..17 | 4150 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4391785..4392378 | 849..256 | 2955 | 99.8 | Minus |
| 2L | 23513712 | 2L | 4392446..4392686 | 257..17 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:29:11 has no hits.
BS05428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:58 Download gff for
BS05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-PA | 1599..2430 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:19 Download gff for
BS05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4104-PA | 1599..2430 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:14:15 Download gff for
BS05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 1997..2830 | 13..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:56 Download gff for
BS05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 1997..2830 | 13..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:56 Download gff for
BS05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4391786..4392377 | 257..848 | 99 | -> | Minus |
| 2L | 4392447..4392688 | 13..256 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:14:15 Download gff for
BS05428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4391786..4392377 | 257..848 | 99 | -> | Minus |
| arm_2L | 4392447..4392688 | 13..256 | 99 | | Minus |
BS05428.5prime Sequence
885 bp (831 high quality bases) assembled on 2005-12-02
> BS05428.5prime
GAAGTTATCAGTCGACATGCCCGACACGGAAATCATCGTTACCAATGCCG
GGGAGCCCTCCACCAAGGCGAGTCTCATCGTGGTATCCAATCGGTTGCCG
TTTGTGCTTATCCGAGATCCGAAGACCGATGAGTTGGAACGCAGGGCCAG
TGCCGGTGGCCTGGTGACTGCAGTGTGCCCGGTGGTGATCAAGGGCAGTG
GTCTCTGGGTGGGCTGGTCGGGTATCCACTTGAAGGATCCTAACGAGGCC
ATTCCCGAGTCCAATCCCAACGATCAGACTCCGACTGCTGGCCTCAAGTC
CGAGCAGGTGGTGTCCGTCAACATCGATTCGAAGATCTTCGATAGCTACT
ACAACGGATGCTGCAACAAGATCTTCTGGCCACTGTTCCACTCGATGCCG
GGAAGAGCCAACTTCGGAGGCGAGCACTGGCACGACTATGTCACTGTCAA
CAAGCACTTCGCCGTGCGGACCATCGAGGCTCTGGAGAAGTGCCTGGCCA
AAAACCAGGGCAGCGAGAAGAGTCCACCGATTGTCTGGATCCACGACTAC
CATCTCATGCTGGCCGCCAATTGGGTGCGCGAGCACGCCGAGGAGAAGAA
CCTGCCCTGCCGACTGGCTTTCTTCCTGCACATCCCATTCCCGCCATGGG
ACATCTTCCGCCTGCTGCCCTGGTCCGATGAGATCCTACAGGGTATGTTG
GGTTGTGACCTGGTAGGCTTCCATATTCAGGACTATTGCCTTAACTTTGT
GGACTGCTGCCAGCGCAATCTCGGCTGCCGTGTGGACAGAAACAATCTGC
TGGTGGAACATGGCGGGCGCACCGTTCGCGTCCGCCCGCTTCCCATTGGT
ATTCCTACGAACGCTTCGTTAAATTTGGCACGACC
BS05428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4104-PA | 2430 | Tps1-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tps1-RA | 2920 | CG4104-RA | 399..1268 | 17..885 | 4280 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4390162..4390706 | 148..692 | 2725 | 100 | Plus |
| 2L | 23513712 | 2L | 4390796..4390992 | 690..885 | 890 | 98 | Plus |
| 2L | 23513712 | 2L | 4388725..4388858 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:49:50 has no hits.
BS05428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:10:59 Download gff for
BS05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:20 Download gff for
BS05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4104-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:29 Download gff for
BS05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 393..1268 | 7..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:33:47 Download gff for
BS05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tps1-RA | 393..1268 | 7..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:33:47 Download gff for
BS05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4388718..4388858 | 11..150 | 97 | -> | Plus |
| 2L | 4390165..4390705 | 151..691 | 100 | -> | Plus |
| 2L | 4390798..4390992 | 692..885 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:29 Download gff for
BS05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4388718..4388858 | 11..150 | 97 | -> | Plus |
| arm_2L | 4390165..4390705 | 151..691 | 100 | -> | Plus |
| arm_2L | 4390798..4390992 | 692..885 | 98 | | Plus |
BS05428.pep Sequence
Translation from 16 to 2445
> BS05428.pep
MPDTEIIVTNAGEPSTKASLIVVSNRLPFVLIRDPKTDELERRASAGGLV
TAVCPVVIKGSGLWVGWSGIHLKDPNEAIPESNPNDQTPTAGLKSEQVVS
VNIDSKIFDSYYNGCCNKIFWPLFHSMPGRANFGGEHWHDYVTVNKHFAV
RTIEALEKCLAKNQGSEKSPPIVWIHDYHLMLAANWVREHAEEKNLPCRL
AFFLHIPFPPWDIFRLLPWSDEILQGMLGCDLVGFHIQDYCLNFVDCCQR
NLGCRVDRNNLLVEHGGRTVRVRPLPIGIPYERFVNLATTAPKVLKTSKM
QIILGVDRLDYTKGLVHRLMAFEALLLKYPQHKEKVSLLQISVPSRTDVK
EYRELKEEVDQLVGRINGRFTTANWAPIRYIYDYVSQDELAALYRDAAVC
LVTPLRDGMNLVAKEFVACQINEVPGVLVISPFAGAGEMMHEALLCNPYE
VNEAAEVIHRALTMPEDERVLRMARLRRREAECDVSHWMRCFLKAVGALE
MDDVGTTIMQPVSVDDFDDYLLKYIGYNHKLALLLDYDGTLAPIAPHPDL
ATLSPEIKNVLYKLSNHSDVYVAVISGRNVDNVKKMVGIEGITYAGNHGL
EILHPDGSKFVHPMPMEYEKKVSDLLKALQDSVCRDGAWVENKGALLTFH
YRETPNHLRGAMVDKARSLIEKYGFKATEAHCALEARPPVQWNKGRASIY
ILRTSFGVDWNERIKIIYVGDDLTDEDAMVALKGMARTFRVTSSDIVKTA
ADHRLPSTDSVYTLLKWVERHFMGRKARANSLTYRPTKGDGVQMQMSLEV
AASANNLEV*
BS05428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tps1-PA | 809 | CG4104-PA | 1..809 | 1..809 | 4282 | 100 | Plus |
| CG5171-PF | 273 | CG5171-PF | 12..267 | 513..768 | 651 | 45.3 | Plus |
| CG5171-PE | 273 | CG5171-PE | 12..267 | 513..768 | 651 | 45.3 | Plus |
| CG5171-PA | 273 | CG5171-PA | 12..267 | 513..768 | 651 | 45.3 | Plus |
| CG5171-PB | 273 | CG5171-PB | 12..267 | 513..768 | 651 | 45.3 | Plus |
