Clone Sequence Records
BS05429.3prime Sequence
920 bp (724 high quality bases) assembled on 2005-12-02
> BS05429.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGGAAAAAAAGTTCATAATGCCAGCT
TGTTTGGTTTTCGGCGCATCCTTTCCAGCTTTCGCGGCTGAAGGCGGTGA
CTTCTTTTTGTTGACGGGAGCAGCAGCCTTTGGGGAAACCTTTTTGTTGG
CAGGCTGGGCTTTTGTTGGTTTACGCTGCGTAATGACGAAGCCATCTTCA
TCCAGATAGGTTTCATTGGCCGGTTCCGTATCCATTTTCTCATCCAATGC
GATGGTCTCTTCATCGGCGGACTTCTTGGGCGGCTGCTCCTCGTCCTCAG
AGTCGCTGATTCGTCGCCGCTTGGAGGACGAGGCCTTTTCCTGATCGGAG
TCGTTGTCCGACTCGATCACCTTCCGCCGCAGCATGTCCAGCTTTTCCTC
CTCGTCGGACGATTCGGCACTCTCCTCGTCGAACAGTTGCATGGAAGTGT
TTGCCGTTGTTGGCTTTTTGGTGGGACTGGGGGATTTCTTTTTCGAGGCT
TCCTTTTTGTTTGAATTGGAAGCATCTTTCTTCGATTTATCTTCGGATTC
CGGTGGCGACTTCTTGGCGCCTGCCGGTTGCTTCTTAAAGAAGTTGTCCA
CGGTGCCGGACGTCGATTTGCTGGGCGTGGCTTTGACATCCTTTGGCTTG
CTGGCCGCCGCTGTGAAGAAGCTATTAATGCTACCCTTTTTGGCTGCTGC
AGGCTTGGCTTTAGAGGCCTGTTCCTTGGGCGAGGTCTTCTTATCCTCCG
GAGAGGACTTGCTGGCCACTGGCTTTTCCGCCTTCGACTTTGCTGGCTCT
GATTTAAGTGAAGATTTTGAAGGCTCCAACTTAAACGCAGACTTTGATGG
CTCCGATTTAGTGGGTTCAGATTTGACTCCATTGTGGGGAGTCGTCCCAT
TTGCACTGGGCACTATCTTT
BS05429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3975-PA | 1296 | CG3975-RA | 393..1296 | 920..17 | 4495 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 434..1338 | 920..16 | 4510 | 99.9 | Minus |
| Pol32-RB | 1486 | CG3975-RB | 434..1338 | 920..16 | 4510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15254967..15255871 | 16..920 | 4510 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:44:29 has no hits.
BS05429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:00 Download gff for
BS05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 393..1296 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:22 Download gff for
BS05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 393..1296 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:41:10 Download gff for
BS05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 434..1338 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:08 Download gff for
BS05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 434..1338 | 16..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:08 Download gff for
BS05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15254967..15255871 | 16..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:41:10 Download gff for
BS05429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15254967..15255871 | 16..920 | 99 | | Plus |
BS05429.5prime Sequence
838 bp (742 high quality bases) assembled on 2005-11-29
> BS05429.5prime
GAAGTTATCAGTCGACATGTCGCTTAAAAAGGCTCTCGACGATTGCATGA
TCGATTTCGATCGCTGTGTGCTGGTCACCGATCTTCTGGAGGAGTACAAA
CTGTCCTACAAGGAGGTGAACGATGTGCTGGAGGCCTACATCAAAGAGCA
GGAACCTGCCACAAAATTCGAGAAGAGATTTCTAGTCCATGGCAAGCGTA
AAACGCAAGGATCCGATTCCGGCGAAGATCTGTACTCTGTGGTGCTGGAG
AGCAGGATGCAGGATTGGCTGGCCAAAGTCCAGGATGCGGAGTCTCAGCT
GTATAGTGTGAAAATAGCCGGTGGCACCAAAGCGCCGGCTGCGATTTTCA
AGCCCATGCAGCATTTGGAGGTGAAGTTGGCAAAAGTGGAGCAGCGTCCT
GGAGCGGGAAAGATAGTGCCCAGTGCAAATGGGACGACTCCCCACAATGG
AGTCAAATCTGAACCCACTAAATCGGAGCCATCAAAGTCTGCGGTTAAGT
TGGAGCCTTCAAAATCTTCACTTAAATCAGAGCCAGCAAAGTCGAAGGCG
GAAAAGCCAGTGGCCAGCAAGTCCTCTCCGGAGGATAAGAAGACCTCGCC
CAAGGAACAGGCCTCTAAAGCCAAGCCTGCAGCAGCCAAAAAGGGTAGCA
TTAATAGCTTCTTCACAGCGGCGGCCAGCAAGCCAAAGGATGTCAAAGCC
ACGCCCAGCAAATCGACGTCCGGCACCGTGGACAACTTCTTTAAGAAAGC
ACCGGCAGGCGCCCAGAAGTCGCCACCGGAATCCGAAATAAATCGAAGAA
AGATGCTTCCAATTTCAACAAAAAGGAAGCCCTCGAAA
BS05429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3975-PA | 1296 | CG3975-RA | 1..731 | 17..747 | 3655 | 100 | Plus |
| CG3975-PA | 1296 | CG3975-RA | 773..816 | 788..831 | 170 | 95.4 | Plus |
| CG3975-PA | 1296 | CG3975-RA | 735..771 | 751..787 | 160 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 36..863 | 11..838 | 3990 | 99 | Plus |
| Pol32-RB | 1486 | CG3975-RB | 36..863 | 11..838 | 3990 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15255448..15256269 | 831..11 | 3955 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:14:05 has no hits.
BS05429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:01 Download gff for
BS05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:23 Download gff for
BS05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:24 Download gff for
BS05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 33..860 | 7..835 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:54 Download gff for
BS05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 33..860 | 7..835 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:54 Download gff for
BS05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15255445..15256272 | 7..835 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:24 Download gff for
BS05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15255445..15256272 | 7..835 | 98 | | Minus |
BS05429.complete Sequence
1328 bp (1328 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635111
> BS05429.complete
GAAGTTATCAGTCGACATGTCGCTTAAAAAGGCTCTCGACGATTGCATGA
TCGATTTCGATCGCTGTGTGCTGGTCACCGATCTTCTGGAGGAGTACAAA
CTGTCCTACAAGGAGGTGAACGATGTGCTGGAGGCCTACATCAAAGAGCA
GGAACCTGCCACAAAATTCGAGAAGAGATTTCTAGTCCATGGCAAGCGTA
AAACGCAAGGATCCGATTCCGGCGAAGATCTGTACTCTGTGGTGCTGGAG
AGCAGGATGCAGGATTGGCTGGCCAAAGTCCAGGATGCGGAGTCTCAGCT
GTATAGTGTGAAAATAGCCGGTGGCACCAAAGCGCCGGCTGCGATTTTCA
AGCCCATGCAGCATTTGGAGGTGAAGTTGGCAAAAGTGGAGCAGCGTCCT
GGAGCGGGAAAGATAGTGCCCAGTGCAAATGGGACGACTCCCCACAATGG
AGTCAAATCTGAACCCACTAAATCGGAGCCATCAAAGTCTGCGGTTAAGT
TGGAGCCTTCAAAATCTTCACTTAAATCAGAGCCAGCAAAGTCGAAGGCG
GAAAAGCCAGTGGCCAGCAAGTCCTCTCCGGAGGATAAGAAGACCTCGCC
CAAGGAACAGGCCTCTAAAGCCAAGCCTGCAGCAGCCAAAAAGGGTAGCA
TTAATAGCTTCTTCACAGCGGCGGCCAGCAAGCCAAAGGATGTCAAAGCC
ACGCCCAGCAAATCGACGTCCGGCACCGTGGACAACTTCTTTAAGAAGCA
ACCGGCAGGCGCCAAGAAGTCGCCACCGGAATCCGAAGATAAATCGAAGA
AAGATGCTTCCAATTCAAACAAAAAGGAAGCCTCGAAAAAGAAATCCCCC
AGTCCCACCAAAAAGCCAACAACGGCAAACACTTCCATGCAACTGTTCGA
CGAGGAGAGTGCCGAATCGTCCGACGAGGAGGAAAAGCTGGACATGCTGC
GGCGGAAGGTGATCGAGTCGGACAACGACTCCGATCAGGAAAAGGCCTCG
TCCTCCAAGCGGCGACGAATCAGCGACTCTGAGGACGAGGAGCAGCCGCC
CAAGAAGTCCGCCGATGAAGAGACCATCGCATTGGATGAGAAAATGGATA
CGGAACCGGCCAATGAAACCTATCTGGATGAAGATGGCTTCGTCATTACG
CAGCGTAAACCAACAAAAGCCCAGCCTGCCAACAAAAAGGTTTCCCCAAA
GGCTGCTGCTCCCGTCAACAAAAAGAAGTCACCGCCTTCAGCCGCGAAAG
CTGGAAAGGATGCGCCGAAAACCAAACAAGCTGGCATTATGAACTTTTTT
TCCAAGAAGTAAAAGCTTTCTAGACCAT
BS05429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1296 | CG3975-PC | 1..1296 | 17..1312 | 6480 | 100 | Plus |
| Pol32-RB | 1296 | CG3975-PB | 1..1296 | 17..1312 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 36..1338 | 11..1313 | 6500 | 99.9 | Plus |
| Pol32-RB | 1486 | CG3975-RB | 36..1338 | 11..1313 | 6500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15254967..15256269 | 1313..11 | 6500 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:21:24 has no hits.
BS05429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:35 Download gff for
BS05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-RA | 1..1296 | 17..1312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:36 Download gff for
BS05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-RA | 33..1338 | 7..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:22 Download gff for
BS05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 42..1335 | 17..1310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:35 Download gff for
BS05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-RA | 33..1338 | 7..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:51 Download gff for
BS05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 42..1335 | 17..1310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:51 Download gff for
BS05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15254970..15256263 | 17..1310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:22 Download gff for
BS05429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15254970..15256263 | 17..1310 | 100 | | Minus |
BS05429.pep Sequence
Translation from 16 to 1311
> BS05429.pep
MSLKKALDDCMIDFDRCVLVTDLLEEYKLSYKEVNDVLEAYIKEQEPATK
FEKRFLVHGKRKTQGSDSGEDLYSVVLESRMQDWLAKVQDAESQLYSVKI
AGGTKAPAAIFKPMQHLEVKLAKVEQRPGAGKIVPSANGTTPHNGVKSEP
TKSEPSKSAVKLEPSKSSLKSEPAKSKAEKPVASKSSPEDKKTSPKEQAS
KAKPAAAKKGSINSFFTAAASKPKDVKATPSKSTSGTVDNFFKKQPAGAK
KSPPESEDKSKKDASNSNKKEASKKKSPSPTKKPTTANTSMQLFDEESAE
SSDEEEKLDMLRRKVIESDNDSDQEKASSSKRRRISDSEDEEQPPKKSAD
EETIALDEKMDTEPANETYLDEDGFVITQRKPTKAQPANKKVSPKAAAPV
NKKKSPPSAAKAGKDAPKTKQAGIMNFFSKK*
BS05429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-PC | 431 | CG3975-PC | 1..431 | 1..431 | 2172 | 100 | Plus |
| Pol32-PB | 431 | CG3975-PB | 1..431 | 1..431 | 2172 | 100 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 135..440 | 89..420 | 182 | 24.8 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 135..440 | 89..420 | 182 | 24.8 | Plus |
| Nopp140-PA | 720 | CG7421-PA | 135..440 | 89..420 | 182 | 24.8 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 82..391 | 135..421 | 177 | 25.4 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 82..391 | 135..421 | 177 | 25.4 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 161..548 | 32..426 | 173 | 23.2 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 8..284 | 106..422 | 165 | 27.7 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 161..548 | 32..426 | 164 | 23.1 | Plus |
