Clone Sequence Records
BS05433.3prime Sequence
923 bp (821 high quality bases) assembled on 2005-12-02
> BS05433.3prime
ATGGTCTAGAAAGCTTCTAGGAGGACTCGCTTGTCGCTGGATGATGCTGT
TCCAGCGGCTGGCGTGGCTGTGGGGCTGATGGAGGAGCATGTGGAGCCGG
CAATGCCATTGGTGGCAGCTTGTTCTCCACCACGGCGACAATGGGCGCTG
GATTCACGAGCGGCGGGGGCAACGCCTCGAAACTCATGCATCCTCGCTGC
TGCCCGTCGTCCACAATGGGCGGTGTGTCGATAGAGTCAATGGTGGATGC
ACTGGACGAGGTCCTTCCACCGCTCAATCCCTCGGAGACGGCCACTAATG
CGGCTGTGGTGTTGCGGTTGTGCTGCAGCAGATCGTTGATCTGTGAGAGG
CGCGAGGAACTGGCGATCGGTGTGCTCAAACTGATAAATTCATTACCACT
GGCCGTTGCAGGAGAAGATGATACAGTGGCTGGCGAGGCTGTTGCTGAAC
CAACTGGATTGCCCACAAGTCGTGACGGCGAGGCTGAGGTGGAGGCTGCG
GTCATGGAGACAGCGGTGGTCTGGTAGGGAACGTTGCTGGAGGCGGTGGT
GGTTGCATTTCCATACGGCGGCACCGAAGGCACCGCACAGGAGCTATACG
CGCACGAACTGGGTGCTCCGGGGGCGACAGCGACGGCGGGTGACGCCGAA
TGCTGCTGATAGGCGGCCGTATAGGAAGTGATCTGAGTGCTGCCATAGCT
GAGCGACTGATATAGTTCTCCGTACGAGGGCGTGGCATTGGAGCCACTAG
CAAAGAGTCCGGAGTCCAGGCTGTCCAATTGGGCGTAGCCCGCGTAGCTC
TGGCTCTGCGCTTGCTGCTGCTGGGGTATCAACTGGCCCGCAGTGGGCAC
TCCTGGCTGCTGTACCTGCTGTTGATAGTAGCTCACGCTGCTCTCGGGTG
TGTAAGCTGGTGAAGCGTACCCG
BS05433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4272-PA | 2559 | CG4272-RA | 1657..2559 | 919..17 | 4515 | 100 | Minus |
| CG4272-PB | 2559 | CG4272-RB | 1657..2559 | 919..17 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 3896 | CG4272-RD | 1834..2741 | 923..16 | 4525 | 99.9 | Minus |
| Axud1-RC | 4318 | CG4272-RC | 2256..3163 | 923..16 | 4525 | 99.9 | Minus |
| Axud1-RA | 4145 | CG4272-RA | 2083..2990 | 923..16 | 4525 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2368313..2368982 | 685..16 | 3350 | 100 | Minus |
| 2L | 23513712 | 2L | 2367973..2368213 | 923..683 | 1190 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-11 17:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6870 | 892..801 | 124 | 63.8 | Minus |
BS05433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:04 Download gff for
BS05433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-PB | 1653..2559 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:28 Download gff for
BS05433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-PB | 1653..2559 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:53:18 Download gff for
BS05433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 2083..2992 | 11..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:12 Download gff for
BS05433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 2083..2992 | 11..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:12 Download gff for
BS05433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2367973..2368213 | 683..923 | 99 | -> | Minus |
| 2L | 2368316..2368984 | 11..682 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:53:18 Download gff for
BS05433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2367973..2368213 | 683..923 | 99 | -> | Minus |
| arm_2L | 2368316..2368984 | 11..682 | 99 | | Minus |
BS05433.5prime Sequence
944 bp (782 high quality bases) assembled on 2005-12-02
> BS05433.5prime
GAAGTTATCAGTCGACATGTTTAGTCCTATAAAAAAAATATTTACGTACA
TACAAAAAAATGCGAGCGGCTCCAATATGTTTAGCCCATCAGGAAACAAG
GCCGCCGGCCAAAGGGAGGGGACCACCAGCCTAACTGCCCACGACGAAGG
CGAAAGGAAGGATCAGCGGCATCTGGATCACAAGGATAATCAGAGCGAAC
CGGAGGAGCGGCAGCATCAGCTGCAAATATTTCCCCACCTGGACGATGAC
GACGACGACATCGAGAGGCAGATCAAAACCTCCATAATTGACGCCAGCAA
GGTGCACGCAGCGAAAGCCAAGGCGTTGGCTTCCCTACCCATGCCGCTTG
AGCAGCTCGATGATGAACTGGCGGACTTTGCTCACGGCCCGGCGGACACC
GAACTAGAGGAGCAGTTCCTTGAGCTGGAGAACTATCCTAATAATGAGAT
AATCGTACTAGGCGATGCGGATCTTAACTCTTCAATAGCTTCCGACGCAG
TCTCCGAGGACCCACTGGCAATTGACAACATTCTTGACTCCGCGTCGGTC
ACCACAAACGAGGAGGTCGACACCAGTGGAGAACTTCTTTGGCTGAAGTT
GAACAATGAGACGGAAATGGCCACCAGATCAGCGGAGGTGGTGTCCAACA
ACCAAGCATCATTGGAGCCTGCCCAGCCAGCCAAACCGAAAGAGGATGAG
CTTAGAGATGGTGGGTCTGATTCTGGTTTAGGAAGTGAAACCTCCGCGTT
ACTCAAGGATCAGGCGGAGAAAGAAGCCGAGCCGGAAATCCAGAAAAAGG
TGGAAACGAAGCCCATAAGGTCCAACCTTAAACGGAGACTCGAAGATTCG
GAAAGCGATGCTATAGATCTGGTGCCCGACATGTCTGCCCCTCCAGTAGC
CCCCCAGAAGCGGACTAAGCGCTCCATCAACTTTGACGAGGTGA
BS05433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4272-PA | 2559 | CG4272-RA | 1..928 | 17..944 | 4640 | 100 | Plus |
| CG4272-PB | 2559 | CG4272-RB | 1..928 | 17..944 | 4640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 3896 | CG4272-RD | 181..1109 | 16..944 | 4645 | 100 | Plus |
| Axud1-RC | 4318 | CG4272-RC | 603..1531 | 16..944 | 4645 | 100 | Plus |
| Axud1-RA | 4145 | CG4272-RA | 430..1358 | 16..944 | 4645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2366320..2367248 | 16..944 | 4645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:14:15 has no hits.
BS05433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:05 Download gff for
BS05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-PB | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:30 Download gff for
BS05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-PB | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:57:00 Download gff for
BS05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 430..1357 | 16..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:56 Download gff for
BS05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 430..1357 | 16..943 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:56 Download gff for
BS05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2366320..2367247 | 16..943 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:57:00 Download gff for
BS05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2366320..2367247 | 16..943 | 100 | | Plus |
BS05433.complete Sequence
2591 bp assembled on 2010-05-10
GenBank Submission: KX796109
> BS05433.complete
GAAGTTATCAGTCGACATGTTTAGTCCTATAAAAAAAATATTTACGTACA
TACAAAAAAATGCGAGCGGCTCCAATATGTTTAGCCCATCAGGAAACAAG
GCCGCCGGCCAAAGGGAGGGGACCACCAGCCTAACTGCCCACGACGAAGG
CGAAAGGAAGGATCAGCGGCATCTGGATCACAAGGATAATCAGAGCGAAC
CGGAGGAGCGGCAGCATCAGCTGCAAATATTTCCCCACCTGGACGATGAC
GACGACGACATCGAGAGGCAGATCAAAACCTCCATAATTGACGCCAGCAA
GGTGCACGCAGCGAAAGCCAAGGCGTTGGCTTCCCTACCCATGCCGCTTG
AGCAGCTCGATGATGAACTGGCGGACTTTGCTCACGGCCCGGCGGACACC
GAACTAGAGGAGCAGTTCCTTGAGCTGGAGAACTATCCTAATAATGAGAT
AATCGTACTAGGCGATGCGGATCTTAACTCTTCAATAGCTTCCGACGCAG
TCTCCGAGGACCCACTGGCAATTGACAACATTCTTGACTCCGCGTCGGTC
ACCACAAACGAGGAGGTCGACACCAGTGGAGAACTTCTTTGGCTGAAGTT
GAACAATGAGACGGAAATGGCCACCAGATCAGCGGAGGTGGTGTCCAACA
ACCAAGCATCATTGGAGCCTGCCCAGCCAGCCAAACCGAAAGAGGATGAG
CTTAGAGATGGTGGGTCTGATTCTGGTTTAGGAAGTGAAACCTCCGCGTT
ACTCAAGGATCAGGCGGAGAAAGAAGCCGAGCCGGAAATCCAGAAAAAGG
TGGAAACGAAGCCCATAAGGTCCAACCTTAAACGGAGACTCGAAGATTCG
GAAAGCGATGCTATAGATCTGGTGCCCGACATGTCTGCCCCTCCAGTAGC
CCCCCAGAAGCGGACTAAGCGCTCCATCAACTTTGACGAGGTGAAGGTGT
TCTACTTCCCACGACAACAGGGCTTCAGTTGTGTACCAACGGCGGGCGGA
TGCACCTTGGGCATGGGTGCAAGGCATGTAGGTTTTAAGACGATGACCCT
GGCCGAGCACGCGGCGGAGTTGAGGCGGGCACATCGCAGCCAGAACCAAG
AACTCCAGCCTCGGGGTTCCAGCAGTGACGACAGCGAGGAGTCCGAGGAG
GATTACCTAAGCGAGGGTAGTGGCTCCGATGCCGAAGACGGTTCCAATGG
CTTCCTACAGCCGGTGACGCCCAAGCAGAGAAGGGCACTGCTGAAAGCGG
CGGGCGTGCGCAAAATTGATGCCAGCGAGAAGAGCGAATGCCGCGATATC
AGAAACTCCCGGGAAGTGTGCGGCTGCTCCTGCAGAGAGTTTTGCGATCC
GGAGACTTGTGCCTGCAGCCAGGCGGGCATTAAATGTCAAGTAGATCGAG
CCATGTTTCCTTGCGGATGTACTCGCGAAGCTTGTGGCAACACAGTTGGC
CGGGTAGAGTTCAATCCCACGAGGGTGCGAACCCACTATATCCACACGGT
GATGCGGTTGGATCTCGAGCAGCGACAGGGTTCGGTTCAAGGCGTCCAGG
GAGGACATCTGCAGCCGCAACAGCAGCAACCATCCCAACAGACCATTGGC
TATTCCCCGGTGGGAACGGCTGGCTCAACATCCGCGTACTTCCTGCAAAC
GCAATCGAACTACAGCTCCGGCTACGCTTCACCAGCTTACACACCCGAGA
GCAGCGTGAGCTACTATCAACAGCAGGTACAGCAGCCAGGAGTGCCCACT
GCGGGCCAGTTGATACCCCAGCAGCAGCAAGCGCAGAGCCAGAGCTACGC
GGGCTACGCCCAATTGGACAGCCTGGACTCCGGACTCTTTGCTAGTGGCT
CCAATGCCACGCCCTCGTACGGAGAACTATATCAGTCGCTCAGCTATGGC
AGCACTCAGATCACTTCCTATACGGCCGCCTATCAGCAGCATTCGGCGTC
ACCCGCCGTCGCTGTCGCCCCCGGAGCACCCAGTTCGTGCGCGTATAGCT
CCTGTGCGGTGCCTTCGGTGCCGCCGTATGGAAATGCAACCACCACCGCC
TCCAGCAACGTTCCCTACCAGACCACCGCTGTCTCCATGACCGCAGCCTC
CACCTCAGCCTCGCCGTCACGACTTGTGGGCAATCCAGTTGGTTCAGCAA
CAGCCTCGCCAGCCACTGTATCATCTTCTCCTGCAACGGCCAGTGGTAAT
GAATTTATCAGTTTGAGCACACCGATCGCCAGTTCCTCGCGCCTCTCACA
GATCAACGATCTGCTGCAGCACAACCGCAACACCACAGCCGCATTAGTGG
CCGTCTCCGAGGGATTGAGCGGTGGAAGGACCTCGTCCAGTGCATCCACC
ATTGACTCTATCGACACACCGCCCATTGTGGACGACGGGCAGCAGCGAGG
ATGCATGAGTTTCGAGGCGTTGCCCCCGCCGCTCGTGAATCCAGCGCCCA
TTGTCGCCGTGGTGGAGAACAAGCTGCCACCAATGGCATTGCCGGCTCCA
CATGCTCCTCCATCAGCCCCACAGCCACGCCAGCCGCTGGAACAGCATCA
TCCAGCGACAAGCGAGTCCTCCTAGAAGCTTTCTAGACCAT
BS05433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 2559 | CG4272-PD | 1..2559 | 17..2575 | 12780 | 100 | Plus |
| Axud1-RC | 2559 | CG4272-PC | 1..2559 | 17..2575 | 12780 | 100 | Plus |
| Axud1-RA | 2559 | CG4272-PA | 1..2559 | 17..2575 | 12780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 3896 | CG4272-RD | 181..2741 | 16..2576 | 12790 | 100 | Plus |
| Axud1-RC | 4318 | CG4272-RC | 603..3163 | 16..2576 | 12790 | 100 | Plus |
| Axud1-RA | 4145 | CG4272-RA | 430..2990 | 16..2576 | 12790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2366320..2368213 | 16..1909 | 9455 | 99.9 | Plus |
| 2L | 23513712 | 2L | 2368313..2368982 | 1907..2576 | 3350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:42:23 has no hits.
BS05433.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:00 Download gff for
BS05433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-RB | 97..2649 | 23..2575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:32 Download gff for
BS05433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 437..2989 | 23..2575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:28 Download gff for
BS05433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 437..2989 | 23..2575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:28 Download gff for
BS05433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2366327..2368213 | 23..1909 | 99 | -> | Plus |
| 2L | 2368316..2368981 | 1910..2575 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:32 Download gff for
BS05433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2366327..2368213 | 23..1909 | 99 | -> | Plus |
| arm_2L | 2368316..2368981 | 1910..2575 | 100 | | Plus |
BS05433.pep Sequence
Translation from 16 to 2574
> BS05433.pep
MFSPIKKIFTYIQKNASGSNMFSPSGNKAAGQREGTTSLTAHDEGERKDQ
RHLDHKDNQSEPEERQHQLQIFPHLDDDDDDIERQIKTSIIDASKVHAAK
AKALASLPMPLEQLDDELADFAHGPADTELEEQFLELENYPNNEIIVLGD
ADLNSSIASDAVSEDPLAIDNILDSASVTTNEEVDTSGELLWLKLNNETE
MATRSAEVVSNNQASLEPAQPAKPKEDELRDGGSDSGLGSETSALLKDQA
EKEAEPEIQKKVETKPIRSNLKRRLEDSESDAIDLVPDMSAPPVAPQKRT
KRSINFDEVKVFYFPRQQGFSCVPTAGGCTLGMGARHVGFKTMTLAEHAA
ELRRAHRSQNQELQPRGSSSDDSEESEEDYLSEGSGSDAEDGSNGFLQPV
TPKQRRALLKAAGVRKIDASEKSECRDIRNSREVCGCSCREFCDPETCAC
SQAGIKCQVDRAMFPCGCTREACGNTVGRVEFNPTRVRTHYIHTVMRLDL
EQRQGSVQGVQGGHLQPQQQQPSQQTIGYSPVGTAGSTSAYFLQTQSNYS
SGYASPAYTPESSVSYYQQQVQQPGVPTAGQLIPQQQQAQSQSYAGYAQL
DSLDSGLFASGSNATPSYGELYQSLSYGSTQITSYTAAYQQHSASPAVAV
APGAPSSCAYSSCAVPSVPPYGNATTTASSNVPYQTTAVSMTAASTSASP
SRLVGNPVGSATASPATVSSSPATASGNEFISLSTPIASSSRLSQINDLL
QHNRNTTAALVAVSEGLSGGRTSSSASTIDSIDTPPIVDDGQQRGCMSFE
ALPPPLVNPAPIVAVVENKLPPMALPAPHAPPSAPQPRQPLEQHHPATSE
SS*
BS05433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-PD | 852 | CG4272-PD | 1..852 | 1..852 | 4383 | 100 | Plus |
| Axud1-PC | 852 | CG4272-PC | 1..852 | 1..852 | 4383 | 100 | Plus |
| Axud1-PA | 852 | CG4272-PA | 1..852 | 1..852 | 4383 | 100 | Plus |
| Axud1-PB | 852 | CG4272-PB | 1..852 | 1..852 | 4383 | 100 | Plus |
