Clone BS05434 Report

Search the DGRC for BS05434

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptwal-RA
Protein status:BS05434.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05434.3prime Sequence

848 bp (770 high quality bases) assembled on 2005-12-02

> BS05434.3prime
ATGGTCTAGAAAGCTTTTACAACTTTCCGGTTAGTTCGGGCACGGCCTTG
AAAAGATCTGCCACGATGCCAATATCGGCGACCTGGAAGATGGGCGCTTC
GGGATCCTTGTTGATGGCCACAATCGTCTTGGAGTCCTTCATGCCAGCCA
AGTGCTGGATGGCGCCTGAGATTCCGACAGCGATGTACAGCTCGGGAGCC
ACAATCTTGCCGGTCTGACCGATCTGCAGATCATTGGGCACAAATCCAGC
ATCCACGGCAGCACGAGAGGCACCCACAGCGGCACCAAACTTATCGGCCA
GATCATACAGCAGCTTGAAGTTATCTCCGGACTTCAGGCCCCGTCCTCCG
GACACAATAACCTTGGCTCCGGCCAGCTCGGGGCGATCGGACTTGGTCAG
CTCCTGGGATACAAATTCGGACAGGCTGCTGGCGAAGTCACCAGCTGGTG
CCTGCTCCACGGCTCCACTTCCACCGCTGGTGGCTGCCGGTGGGAAATTG
GTGCTCCTTACGGTGATCACCTTAACGGCGTCCTTGGATTTCAGGGTGAG
GATAGCATTTCCGGCGTAGATAGTGCGCACAAAGGTGTCGTCCGACTTAA
CATCGATGATCTCCGAAATGGGCGACACATCCAGCTTGGCCGCCACGCGT
GGCAGCACGTTTTTGCCGAAAGCCGAAGCTCCGGCCAGGATGTGGGTGAA
CTTGAACTGAGACTGGGCGGCCAGGACCAATGGGGTCAGCGACTCCGCGG
TAAATCCGTTGAAGGCGGCATTTTCGGCCACCAGAACCTTGGTCACGCCA
TCCACCTTGGAAAGAGCCTCGGAAGCGGGTCCGCATTTTGTGCCTGCC

BS05434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8996-PA 993 wal-RA 162..993 848..17 4160 100 Minus
CG8996-PB 993 wal-RB 162..993 848..17 4160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 1579 CG8996-RB 238..1069 848..17 4160 100 Minus
wal-RA 1212 CG8996-RA 238..1069 848..17 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11689079..11689888 17..826 4050 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:52:45 has no hits.

BS05434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:06 Download gff for BS05434.3prime
Subject Subject Range Query Range Percent Splice Strand
wal-PA 162..993 17..848 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:31 Download gff for BS05434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8996-PB 162..993 17..848 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:12:21 Download gff for BS05434.3prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 238..1072 13..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:26 Download gff for BS05434.3prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 238..1072 13..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:26 Download gff for BS05434.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11689076..11689888 13..826 99 <- Plus
2R 11690446..11690467 827..848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:12:21 Download gff for BS05434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7576581..7577393 13..826 99 <- Plus
arm_2R 7577951..7577972 827..848 100   Plus

BS05434.5prime Sequence

826 bp (748 high quality bases) assembled on 2005-12-02

> BS05434.5prime
GAAGTTATCAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCA
GCAGCATTTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAAC
AATGAGGTACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAA
GATCGGTGGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCG
CTTCCGAGGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCC
GAAAATGCCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGT
CCTGGCCGCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTT
CGGCTTTCGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTG
TCGCCCATTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCG
CACTATCTACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCG
TTAAGGTGATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGC
GGTGGAAGTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAG
CCTGTCCGAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGC
TGGCCGGAGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGA
GATAACTTCAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGT
GGGTGCCTCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGC
AGATCGGTCAGACCGGCAAGATTGTG

BS05434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8996-PA 993 wal-RA 1..810 17..826 4050 100 Plus
CG8996-PB 993 wal-RB 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 1579 CG8996-RB 77..886 17..826 4050 100 Plus
wal-RA 1212 CG8996-RA 77..886 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11689262..11689888 826..200 3135 100 Minus
2R 25286936 2R 11690445..11690586 200..59 710 100 Minus
2R 25286936 2R 11690678..11690719 58..17 210 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:56:25 has no hits.

BS05434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:07 Download gff for BS05434.5prime
Subject Subject Range Query Range Percent Splice Strand
wal-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:33 Download gff for BS05434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8996-PB 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:44:05 Download gff for BS05434.5prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 69..886 9..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:51:16 Download gff for BS05434.5prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 69..886 9..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:51:16 Download gff for BS05434.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11690446..11690586 59..199 100 <- Minus
2R 11690678..11690727 9..58 92   Minus
2R 11689262..11689888 200..826 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:44:05 Download gff for BS05434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7576767..7577393 200..826 100 <- Minus
arm_2R 7577951..7578091 59..199 100 <- Minus
arm_2R 7578183..7578232 9..58 92   Minus

BS05434.complete Sequence

1025 bp (1025 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635112

> BS05434.complete
GAAGTTATCAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCA
GCAGCATTTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAAC
AATGAGGTACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAA
GATCGGTGGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCG
CTTCCGAGGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCC
GAAAATGCCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGT
CCTGGCCGCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTT
CGGCTTTCGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTG
TCGCCCATTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCG
CACTATCTACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCG
TTAAGGTGATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGC
GGTGGAAGTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAG
CCTGTCCGAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGC
TGGCCGGAGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGA
GATAACTTCAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGT
GGGTGCCTCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGC
AGATCGGTCAGACCGGCAAGATTGTGGCTCCCGAGCTGTACATCGCTGTC
GGAATCTCAGGCGCCATCCAGCACTTGGCTGGCATGAAGGACTCCAAGAC
GATTGTGGCCATCAACAAGGATCCCGAAGCGCCCATCTTCCAGGTCGCCG
ATATTGGCATCGTGGCAGATCTTTTCAAGGCCGTGCCCGAACTAACCGGA
AAGTTGTAAAAGCTTTCTAGACCAT

BS05434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 993 CG8996-PB 1..993 17..1009 4965 100 Plus
wal-RA 993 CG8996-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 1579 CG8996-RB 77..1069 17..1009 4965 100 Plus
wal-RA 1212 CG8996-RA 77..1069 17..1009 4965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11689079..11689888 1009..200 4050 100 Minus
2R 25286936 2R 11690445..11690586 200..59 710 100 Minus
2R 25286936 2R 11690678..11690719 58..17 210 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:54:06 has no hits.

BS05434.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:18 Download gff for BS05434.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 1..993 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:17 Download gff for BS05434.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 24..1027 9..1013 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:25 Download gff for BS05434.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 82..1067 22..1007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:19 Download gff for BS05434.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 24..1027 9..1013 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:23 Download gff for BS05434.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 82..1067 22..1007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:23 Download gff for BS05434.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11689081..11689888 200..1007 100 <- Minus
2R 11690446..11690586 59..199 100 <- Minus
2R 11690678..11690714 22..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:25 Download gff for BS05434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7576586..7577393 200..1007 100 <- Minus
arm_2R 7577951..7578091 59..199 100 <- Minus
arm_2R 7578183..7578219 22..58 100   Minus

BS05434.pep Sequence

Translation from 16 to 1008

> BS05434.pep
MFASNTRNLMRSSILQRCKSTLVVAEHNNEVLNPITLNTISAAKKIGGDV
TVLVAGTKCGPASEALSKVDGVTKVLVAENAAFNGFTAESLTPLVLAAQS
QFKFTHILAGASAFGKNVLPRVAAKLDVSPISEIIDVKSDDTFVRTIYAG
NAILTLKSKDAVKVITVRSTNFPPAATSGGSGAVEQAPAGDFASSLSEFV
SQELTKSDRPELAGAKVIVSGGRGLKSGDNFKLLYDLADKFGAAVGASRA
AVDAGFVPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
KDPEAPIFQVADIGIVADLFKAVPELTGKL*

BS05434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
wal-PB 330 CG8996-PB 1..330 1..330 1621 100 Plus
wal-PA 330 CG8996-PA 1..330 1..330 1621 100 Plus