Clone Sequence Records
BS05434.3prime Sequence
848 bp (770 high quality bases) assembled on 2005-12-02
> BS05434.3prime
ATGGTCTAGAAAGCTTTTACAACTTTCCGGTTAGTTCGGGCACGGCCTTG
AAAAGATCTGCCACGATGCCAATATCGGCGACCTGGAAGATGGGCGCTTC
GGGATCCTTGTTGATGGCCACAATCGTCTTGGAGTCCTTCATGCCAGCCA
AGTGCTGGATGGCGCCTGAGATTCCGACAGCGATGTACAGCTCGGGAGCC
ACAATCTTGCCGGTCTGACCGATCTGCAGATCATTGGGCACAAATCCAGC
ATCCACGGCAGCACGAGAGGCACCCACAGCGGCACCAAACTTATCGGCCA
GATCATACAGCAGCTTGAAGTTATCTCCGGACTTCAGGCCCCGTCCTCCG
GACACAATAACCTTGGCTCCGGCCAGCTCGGGGCGATCGGACTTGGTCAG
CTCCTGGGATACAAATTCGGACAGGCTGCTGGCGAAGTCACCAGCTGGTG
CCTGCTCCACGGCTCCACTTCCACCGCTGGTGGCTGCCGGTGGGAAATTG
GTGCTCCTTACGGTGATCACCTTAACGGCGTCCTTGGATTTCAGGGTGAG
GATAGCATTTCCGGCGTAGATAGTGCGCACAAAGGTGTCGTCCGACTTAA
CATCGATGATCTCCGAAATGGGCGACACATCCAGCTTGGCCGCCACGCGT
GGCAGCACGTTTTTGCCGAAAGCCGAAGCTCCGGCCAGGATGTGGGTGAA
CTTGAACTGAGACTGGGCGGCCAGGACCAATGGGGTCAGCGACTCCGCGG
TAAATCCGTTGAAGGCGGCATTTTCGGCCACCAGAACCTTGGTCACGCCA
TCCACCTTGGAAAGAGCCTCGGAAGCGGGTCCGCATTTTGTGCCTGCC
BS05434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8996-PA | 993 | wal-RA | 162..993 | 848..17 | 4160 | 100 | Minus |
CG8996-PB | 993 | wal-RB | 162..993 | 848..17 | 4160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-RB | 1579 | CG8996-RB | 238..1069 | 848..17 | 4160 | 100 | Minus |
wal-RA | 1212 | CG8996-RA | 238..1069 | 848..17 | 4160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11689079..11689888 | 17..826 | 4050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:52:45 has no hits.
BS05434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:06 Download gff for
BS05434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-PA | 162..993 | 17..848 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:31 Download gff for
BS05434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8996-PB | 162..993 | 17..848 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:12:21 Download gff for
BS05434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 238..1072 | 13..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:26 Download gff for
BS05434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 238..1072 | 13..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:26 Download gff for
BS05434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11689076..11689888 | 13..826 | 99 | <- | Plus |
2R | 11690446..11690467 | 827..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:12:21 Download gff for
BS05434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7576581..7577393 | 13..826 | 99 | <- | Plus |
arm_2R | 7577951..7577972 | 827..848 | 100 | | Plus |
BS05434.5prime Sequence
826 bp (748 high quality bases) assembled on 2005-12-02
> BS05434.5prime
GAAGTTATCAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCA
GCAGCATTTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAAC
AATGAGGTACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAA
GATCGGTGGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCG
CTTCCGAGGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCC
GAAAATGCCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGT
CCTGGCCGCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTT
CGGCTTTCGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTG
TCGCCCATTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCG
CACTATCTACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCG
TTAAGGTGATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGC
GGTGGAAGTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAG
CCTGTCCGAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGC
TGGCCGGAGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGA
GATAACTTCAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGT
GGGTGCCTCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGC
AGATCGGTCAGACCGGCAAGATTGTG
BS05434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8996-PA | 993 | wal-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
CG8996-PB | 993 | wal-RB | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-RB | 1579 | CG8996-RB | 77..886 | 17..826 | 4050 | 100 | Plus |
wal-RA | 1212 | CG8996-RA | 77..886 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11689262..11689888 | 826..200 | 3135 | 100 | Minus |
2R | 25286936 | 2R | 11690445..11690586 | 200..59 | 710 | 100 | Minus |
2R | 25286936 | 2R | 11690678..11690719 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:56:25 has no hits.
BS05434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:07 Download gff for
BS05434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:33 Download gff for
BS05434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8996-PB | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:44:05 Download gff for
BS05434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 69..886 | 9..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:51:16 Download gff for
BS05434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 69..886 | 9..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:51:16 Download gff for
BS05434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11690446..11690586 | 59..199 | 100 | <- | Minus |
2R | 11690678..11690727 | 9..58 | 92 | | Minus |
2R | 11689262..11689888 | 200..826 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:44:05 Download gff for
BS05434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7576767..7577393 | 200..826 | 100 | <- | Minus |
arm_2R | 7577951..7578091 | 59..199 | 100 | <- | Minus |
arm_2R | 7578183..7578232 | 9..58 | 92 | | Minus |
BS05434.complete Sequence
1025 bp (1025 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635112
> BS05434.complete
GAAGTTATCAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCA
GCAGCATTTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAAC
AATGAGGTACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAA
GATCGGTGGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCG
CTTCCGAGGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCC
GAAAATGCCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGT
CCTGGCCGCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTT
CGGCTTTCGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTG
TCGCCCATTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCG
CACTATCTACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCG
TTAAGGTGATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGC
GGTGGAAGTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAG
CCTGTCCGAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGC
TGGCCGGAGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGA
GATAACTTCAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGT
GGGTGCCTCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGC
AGATCGGTCAGACCGGCAAGATTGTGGCTCCCGAGCTGTACATCGCTGTC
GGAATCTCAGGCGCCATCCAGCACTTGGCTGGCATGAAGGACTCCAAGAC
GATTGTGGCCATCAACAAGGATCCCGAAGCGCCCATCTTCCAGGTCGCCG
ATATTGGCATCGTGGCAGATCTTTTCAAGGCCGTGCCCGAACTAACCGGA
AAGTTGTAAAAGCTTTCTAGACCAT
BS05434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-RB | 993 | CG8996-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
wal-RA | 993 | CG8996-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-RB | 1579 | CG8996-RB | 77..1069 | 17..1009 | 4965 | 100 | Plus |
wal-RA | 1212 | CG8996-RA | 77..1069 | 17..1009 | 4965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11689079..11689888 | 1009..200 | 4050 | 100 | Minus |
2R | 25286936 | 2R | 11690445..11690586 | 200..59 | 710 | 100 | Minus |
2R | 25286936 | 2R | 11690678..11690719 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:54:06 has no hits.
BS05434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:18 Download gff for
BS05434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RB | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:17 Download gff for
BS05434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RB | 24..1027 | 9..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:25 Download gff for
BS05434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 82..1067 | 22..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:19 Download gff for
BS05434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RB | 24..1027 | 9..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:23 Download gff for
BS05434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 82..1067 | 22..1007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:23 Download gff for
BS05434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11689081..11689888 | 200..1007 | 100 | <- | Minus |
2R | 11690446..11690586 | 59..199 | 100 | <- | Minus |
2R | 11690678..11690714 | 22..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:25 Download gff for
BS05434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7576586..7577393 | 200..1007 | 100 | <- | Minus |
arm_2R | 7577951..7578091 | 59..199 | 100 | <- | Minus |
arm_2R | 7578183..7578219 | 22..58 | 100 | | Minus |
BS05434.pep Sequence
Translation from 16 to 1008
> BS05434.pep
MFASNTRNLMRSSILQRCKSTLVVAEHNNEVLNPITLNTISAAKKIGGDV
TVLVAGTKCGPASEALSKVDGVTKVLVAENAAFNGFTAESLTPLVLAAQS
QFKFTHILAGASAFGKNVLPRVAAKLDVSPISEIIDVKSDDTFVRTIYAG
NAILTLKSKDAVKVITVRSTNFPPAATSGGSGAVEQAPAGDFASSLSEFV
SQELTKSDRPELAGAKVIVSGGRGLKSGDNFKLLYDLADKFGAAVGASRA
AVDAGFVPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
KDPEAPIFQVADIGIVADLFKAVPELTGKL*
BS05434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-PB | 330 | CG8996-PB | 1..330 | 1..330 | 1621 | 100 | Plus |
wal-PA | 330 | CG8996-PA | 1..330 | 1..330 | 1621 | 100 | Plus |