Clone BS05436 Report

Search the DGRC for BS05436

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG8042-RA
Protein status:BS05436.pep: full length peptide match
Sequenced Size:2003

Clone Sequence Records

BS05436.complete Sequence

2003 bp assembled on 2009-12-07

GenBank Submission: KX797629

> BS05436.complete
GAAGTTATCAGTCGACATGAACTGGCATAAGGGCAACATTGCGGAGGCCG
TGGCGGCATCAAAGGCCAAGGGCGCCGTGTTTGTCGTCTTCATCGAGGGC
CAGGACGAAATGACCCGAAAACTAGAGCGGTTCGTGGATGACAGTCAGGT
GCGCTCCCGCCTGGAAACCTCCGATTTTGTCGCCATCAAAGTCCAGGGAA
ATAGCTCCGCCTACGGACAGTTCATGTCGTTATACAAAATCGTGCCAATT
CCCTCGCTCTTCTTTATTGGCAAAACGGGTACACCTCTGGAGATAGCCAC
TGGGGTTACGGCCAGCGTAGATGAACTGACGGAAAAGATCGATAAGGTTC
TGATCCTGGCGGGAAAACGAACCGAGCCTGTGGCAGCCAGCAGCTCTTCA
TGTGCGAAGACACTTGACCCCAATGAAGTCAGGAGCTTCGCCGGAGCAGA
TGGCTCAAGCAGCACTGGGGAATCTCAAGTAGTTCAAACAGCATCAGAAA
ACTTTAGAGATCCTGAAACCACCTCAGTTTCAAACTCACCAACTGGAGGT
GTGGAGGAGGCCAAGACGAATCCACCAAATTCTCCTGTAGCAGCCAGCTT
GGCATCTATACCCGCTGCTGTATCAACCTCCAGTTTGGAAGGAAAATCAG
GATCAGAGGCAGAGGCTGCTTCTCCCACCGCTTTGGCGGCCGAAAAGAGA
GCAGCAGCGAGCAAAGTGGAGGGTTCAGCTACCACATCCGGGGCAGCTGC
TCGGAATTTTGCCACTAATAATCTTATACCGGCTGTGCCGCTAATGACAC
CTGCTGTCCCAGTTCCAACACAACGACCGCTCGAAGCCCAGGACAACACC
GAATCCGAGGAAAGGTTGGCCGAAGTCAGGAACATTCTGGAGCAAAAGCG
AAAGGAGCGTGTGGAGGAGGAGAAACGTATGGAGAAGGAGAACGAGCTGA
GACGACGCAGGGACGGAAGGGAGGCACAGAGCCAACAGGCAAGGGCCAAG
GAGCAGGAGCTCAAGAATATGCAGGAACAGATTAAGCGTGAGCGTCAGGA
GGAGCTGGCGGCCAGGGAGCGCATTCGTGCCCAAATTGCAGCCGATCGGG
CAGAGCAGGCACAACGTTTTAATACGCCGGACATTAGCAGCACGACCAAT
TCGGTGGCGGCCACCGCTGCCTCCAACGTGATCACAACAGACGCCTCGGT
GAGTTCGGTGGACGAGACGAGGCTGCAGATCCGACTACCCGGTGGCATTC
AGCGCACCAAATCCTTTCCAGCCGGCGAGGTGCTGGCTACCGTTCGTGTC
TACGTGCGAAACGAGATGCTGGCGGCGAGCGATGTACGCGACTTTACCCT
GGCTACCAGTTACCCACGAAGGGAGTTCCAAACGGAGGACGAGGTCAAGA
CCCTGAACGAGCTAAATCTAGTGCCCAATGCGGTGGTTCTGGTGCTGACC
AAGGAGCAAGTGAATCGTGTGGTTCAAAGCGGTGGCTCCCTGATGACCAT
GCTGGGCACCGTAATTTGGGCTTTGCTCACACCGGCGGCCAAGGCTTTCG
ACTACATAAACAAGATGGGTCTTCGACCGCTCACCCAGAAGCTGAGCGTG
TTCATGGCCAACTTCCGGTGGCCAGGGCAACGGGCCGGCCTGGAAGTTTA
CCAGGGCGATGCTGCTGCCCGTCGCAACATGGATATGTTCTCCCTGCGAC
CGACACCAGCTCCAGGCTACGAATACGATGGTGCTTCAACGGAACAGACT
GGCGGATCAGCGGAGCGGCCCACTCCACAAAATCAACCGGGACCGGGAAA
TACTCCGCCGGCTCATAACACCAGCCAAGCTTCCGCTTCGCAGTCTCAGC
AATTCCAACAGCGACCCGGTGGCTATCAGCCGCCAAAATATGGTGACTCG
AATATTCGAAGATTGCAGGATACGAAGAAGGATGAAAAGGATAAGGACAA
GGCAACTTATAATGGAAACTCCACGCAGCAGCAATAGAAGCTTTCTAGAC
CAT

BS05436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8042-RA 1971 CG8042-PA 1..1971 17..1987 9840 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8042-RA 2173 CG8042-RA 89..2063 15..1989 9860 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7972946..7973585 1662..1023 3200 100 Minus
3L 28110227 3L 7973649..7974185 1025..489 2685 100 Minus
3L 28110227 3L 7972559..7972885 1989..1663 1635 100 Minus
3L 28110227 3L 7974301..7974558 491..234 1290 100 Minus
3L 28110227 3L 7974628..7974763 233..98 680 100 Minus
3L 28110227 3L 7974819..7974903 99..15 410 98.8 Minus
Blast to na_te.dros performed on 2014-11-28 02:05:55 has no hits.

BS05436.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:34 Download gff for BS05436.complete
Subject Subject Range Query Range Percent Splice Strand
CG8042-RA 108..2078 17..1987 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:52 Download gff for BS05436.complete
Subject Subject Range Query Range Percent Splice Strand
CG8042-RA 91..2061 17..1987 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:36 Download gff for BS05436.complete
Subject Subject Range Query Range Percent Splice Strand
CG8042-RA 108..2078 17..1987 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:56 Download gff for BS05436.complete
Subject Subject Range Query Range Percent Splice Strand
CG8042-RA 91..2061 17..1987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:56 Download gff for BS05436.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7972561..7972885 1663..1987 100 <- Minus
3L 7972946..7973583 1025..1662 100 <- Minus
3L 7973650..7974182 492..1024 100 <- Minus
3L 7974301..7974558 234..491 100 <- Minus
3L 7974628..7974762 99..233 100 <- Minus
3L 7974820..7974901 17..98 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:52 Download gff for BS05436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7965661..7965985 1663..1987 100 <- Minus
arm_3L 7966046..7966683 1025..1662 100 <- Minus
arm_3L 7966750..7967282 492..1024 100 <- Minus
arm_3L 7967401..7967658 234..491 100 <- Minus
arm_3L 7967728..7967862 99..233 100 <- Minus
arm_3L 7967920..7968001 17..98 98   Minus

BS05436.3prime Sequence

791 bp (733 high quality bases) assembled on 2005-12-02

> BS05436.3prime
ATGGTCTAGAAAGCTTCTATTGCTGCTGCGTGGAGTTTCCATTATAAGTT
GCCTTGTCCTTATCCTTTTCATCCTTCTTCGTATCCTGCAATCTTCGAAT
ATTCGAGTCACCATATTTTGGCGGCTGATAGCCACCGGGTCGCTGTTGGA
ATTGCTGAGACTGCGAAGCGGAAGCTTGGCTGGTGTTATGAGCCGGCGGA
GTATTTCCCGGTCCCGGTTGATTTTGTGGAGTGGGCCGCTCCGCTGATCC
GCCAGTCTGTTCCGTTGAAGCACCATCGTATTCGTAGCCTGGAGCTGGTG
TCGGTCGCAGGGAGAACATATCCATGTTGCGACGGGCAGCAGCATCGCCC
TGGTAAACTTCCAGGCCGGCCCGTTGCCCTGGCCACCGGAAGTTGGCCAT
GAACACGCTCAGCTTCTGGGTGAGCGGTCGAAGACCCATCTTGTTTATGT
AGTCGAAAGCCTTGGCCGCCGGTGTGAGCAAAGCCCAAATTACGGTGCCC
AGCATGGTCATCAGGGAGCCACCGCTTTGAACCACACGATTCACTTGCTC
CTTGGTCAGCACCAGAACCACCGCATTGGGCACTAGATTTAGCTCGTTCA
GGGTCTTGACCTCGTCCTCCGTTTGGAACTCCCTTCGTGGGTAACTGGTA
GCCAGGGTAAAGTCGCGTACATCGCTCGCCGCCAGCATCTCGTTTCGCAC
GTAGACACGAACGGTAGCCAGCACCTCGCCGGCTGGAAAGGATTTGGTGC
GCTGAATGCCACCGGGTAGTCGGATCTGCAGCCTCGTCTCG

BS05436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8042-PA 1971 CG8042-RA 1197..1971 791..17 3875 100 Minus
CG8042-PB 1530 CG8042-RB 756..1530 791..17 3875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8042-RA 2173 CG8042-RA 1287..2063 791..15 3885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7972946..7973395 342..791 2250 100 Plus
3L 28110227 3L 7972559..7972885 15..341 1635 100 Plus
Blast to na_te.dros performed on 2015-02-01 08:56:27 has no hits.

BS05436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:11 Download gff for BS05436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8042-PB 756..1530 17..791 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:37 Download gff for BS05436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8042-PB 756..1530 17..791 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:30:37 Download gff for BS05436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8042-RA 1287..2063 15..791 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:58 Download gff for BS05436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8042-RA 1287..2063 15..791 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:58 Download gff for BS05436.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7972559..7972885 15..341 100 <- Plus
3L 7972946..7973395 342..791 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:30:37 Download gff for BS05436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7965659..7965985 15..341 100 <- Plus
arm_3L 7966046..7966495 342..791 100   Plus

BS05436.5prime Sequence

808 bp (646 high quality bases) assembled on 2005-12-02

> BS05436.5prime
GAAGTTATCAGTCGACATGAACTGGCATAAGGGCAACATTGCGGAGGCCG
TGGCGGCATCAAAGGCCAAGGGCGCCGTGTTTGTCGTCTTCATCGAGGGC
CAGGACGAAATGACCCGAAAACTAGAGCGGTTCGTGGATGACAGTCAGGT
GCGCTCCCGCCTGGAAACCTCCGATTTTGTCGCCATCAAAGTCCAGGGAA
ATAGCTCCGCCTACGGACAGTTCATGTCGTTATACAAAATCGTGCCAATT
CCCTCGCTCTTCTTTATTGGCAAAACGGGTACACCTCTGGAGATAGCCAC
TGGGGTTACGGCCAGCGTAGATGAACTGACGGAAAAGATCGATAAGGTTC
TGATCCTGGCGGGAAAACGAACCGAGCCTGTGGCAGCCAGCAGCTCTTCA
TGTGCGAAGACACTTGACCCCAATGAAGTCAGGAGCTTCGCCGGAGCAGA
TGGCTCAAGCAGCACTGGGGAATCTCAAGTAGTTCAAACAGCATCAGAAA
ACTTTAGAGATCCTGAAACCACCTCAGTTTCAAACTCACCAACTGGAGGT
GTGGAGGAGGCCAAGACGAATCCACCAAATTCTCCTGTAGCAGCCAGCTT
GGCATCTATACCCGCTGCTGTATCAACCTCCAGTTTGGAAGGAAAATCAG
GATCAGAGGCAGAGGCTGCTTCTCCCACCGCTTTGGCGGCCGAAAAGAGA
GCAGCAGCGAGCAAAGTGGAGGGTTCAGCTACCACATCCGGGGCAGCTGC
TCGGAATTTTGCCACTAATAATCTTATACCGGCTGTGCCGCTAATGACAC
CTGCTGTC

BS05436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8042-PA 1971 CG8042-RA 1..792 17..808 3935 99.8 Plus
CG8042-PB 1530 CG8042-RB 92..351 549..808 1300 100 Plus
CG8042-PB 1530 CG8042-RB 1..93 138..230 465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8042-RA 2173 CG8042-RA 89..882 15..808 3955 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7973866..7974185 808..489 1600 100 Minus
3L 28110227 3L 7974301..7974558 491..234 1290 100 Minus
3L 28110227 3L 7974628..7974763 233..98 680 100 Minus
3L 28110227 3L 7974819..7974903 99..15 410 98.8 Minus
Blast to na_te.dros performed on 2015-02-09 23:41:05 has no hits.

BS05436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:12 Download gff for BS05436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8042-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:40 Download gff for BS05436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8042-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:53 Download gff for BS05436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8042-RA 83..882 9..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:18 Download gff for BS05436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8042-RA 83..882 9..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:18 Download gff for BS05436.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7973866..7974182 492..808 100 <- Minus
3L 7974301..7974558 234..491 100 <- Minus
3L 7974628..7974762 99..233 100 <- Minus
3L 7974820..7974906 9..98 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:53 Download gff for BS05436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7966966..7967282 492..808 100 <- Minus
arm_3L 7967401..7967658 234..491 100 <- Minus
arm_3L 7967728..7967862 99..233 100 <- Minus
arm_3L 7967920..7968006 9..98 94   Minus

BS05436.pep Sequence

Translation from 16 to 1986

> BS05436.pep
MNWHKGNIAEAVAASKAKGAVFVVFIEGQDEMTRKLERFVDDSQVRSRLE
TSDFVAIKVQGNSSAYGQFMSLYKIVPIPSLFFIGKTGTPLEIATGVTAS
VDELTEKIDKVLILAGKRTEPVAASSSSCAKTLDPNEVRSFAGADGSSST
GESQVVQTASENFRDPETTSVSNSPTGGVEEAKTNPPNSPVAASLASIPA
AVSTSSLEGKSGSEAEAASPTALAAEKRAAASKVEGSATTSGAAARNFAT
NNLIPAVPLMTPAVPVPTQRPLEAQDNTESEERLAEVRNILEQKRKERVE
EEKRMEKENELRRRRDGREAQSQQARAKEQELKNMQEQIKRERQEELAAR
ERIRAQIAADRAEQAQRFNTPDISSTTNSVAATAASNVITTDASVSSVDE
TRLQIRLPGGIQRTKSFPAGEVLATVRVYVRNEMLAASDVRDFTLATSYP
RREFQTEDEVKTLNELNLVPNAVVLVLTKEQVNRVVQSGGSLMTMLGTVI
WALLTPAAKAFDYINKMGLRPLTQKLSVFMANFRWPGQRAGLEVYQGDAA
ARRNMDMFSLRPTPAPGYEYDGASTEQTGGSAERPTPQNQPGPGNTPPAH
NTSQASASQSQQFQQRPGGYQPPKYGDSNIRRLQDTKKDEKDKDKATYNG
NSTQQQ*

BS05436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8042-PA 656 CG8042-PA 1..656 1..656 3279 100 Plus
CG8209-PA 331 CG8209-PA 46..324 206..474 278 32.3 Plus