Clone Sequence Records
BS05436.complete Sequence
2003 bp assembled on 2009-12-07
GenBank Submission: KX797629
> BS05436.complete
GAAGTTATCAGTCGACATGAACTGGCATAAGGGCAACATTGCGGAGGCCG
TGGCGGCATCAAAGGCCAAGGGCGCCGTGTTTGTCGTCTTCATCGAGGGC
CAGGACGAAATGACCCGAAAACTAGAGCGGTTCGTGGATGACAGTCAGGT
GCGCTCCCGCCTGGAAACCTCCGATTTTGTCGCCATCAAAGTCCAGGGAA
ATAGCTCCGCCTACGGACAGTTCATGTCGTTATACAAAATCGTGCCAATT
CCCTCGCTCTTCTTTATTGGCAAAACGGGTACACCTCTGGAGATAGCCAC
TGGGGTTACGGCCAGCGTAGATGAACTGACGGAAAAGATCGATAAGGTTC
TGATCCTGGCGGGAAAACGAACCGAGCCTGTGGCAGCCAGCAGCTCTTCA
TGTGCGAAGACACTTGACCCCAATGAAGTCAGGAGCTTCGCCGGAGCAGA
TGGCTCAAGCAGCACTGGGGAATCTCAAGTAGTTCAAACAGCATCAGAAA
ACTTTAGAGATCCTGAAACCACCTCAGTTTCAAACTCACCAACTGGAGGT
GTGGAGGAGGCCAAGACGAATCCACCAAATTCTCCTGTAGCAGCCAGCTT
GGCATCTATACCCGCTGCTGTATCAACCTCCAGTTTGGAAGGAAAATCAG
GATCAGAGGCAGAGGCTGCTTCTCCCACCGCTTTGGCGGCCGAAAAGAGA
GCAGCAGCGAGCAAAGTGGAGGGTTCAGCTACCACATCCGGGGCAGCTGC
TCGGAATTTTGCCACTAATAATCTTATACCGGCTGTGCCGCTAATGACAC
CTGCTGTCCCAGTTCCAACACAACGACCGCTCGAAGCCCAGGACAACACC
GAATCCGAGGAAAGGTTGGCCGAAGTCAGGAACATTCTGGAGCAAAAGCG
AAAGGAGCGTGTGGAGGAGGAGAAACGTATGGAGAAGGAGAACGAGCTGA
GACGACGCAGGGACGGAAGGGAGGCACAGAGCCAACAGGCAAGGGCCAAG
GAGCAGGAGCTCAAGAATATGCAGGAACAGATTAAGCGTGAGCGTCAGGA
GGAGCTGGCGGCCAGGGAGCGCATTCGTGCCCAAATTGCAGCCGATCGGG
CAGAGCAGGCACAACGTTTTAATACGCCGGACATTAGCAGCACGACCAAT
TCGGTGGCGGCCACCGCTGCCTCCAACGTGATCACAACAGACGCCTCGGT
GAGTTCGGTGGACGAGACGAGGCTGCAGATCCGACTACCCGGTGGCATTC
AGCGCACCAAATCCTTTCCAGCCGGCGAGGTGCTGGCTACCGTTCGTGTC
TACGTGCGAAACGAGATGCTGGCGGCGAGCGATGTACGCGACTTTACCCT
GGCTACCAGTTACCCACGAAGGGAGTTCCAAACGGAGGACGAGGTCAAGA
CCCTGAACGAGCTAAATCTAGTGCCCAATGCGGTGGTTCTGGTGCTGACC
AAGGAGCAAGTGAATCGTGTGGTTCAAAGCGGTGGCTCCCTGATGACCAT
GCTGGGCACCGTAATTTGGGCTTTGCTCACACCGGCGGCCAAGGCTTTCG
ACTACATAAACAAGATGGGTCTTCGACCGCTCACCCAGAAGCTGAGCGTG
TTCATGGCCAACTTCCGGTGGCCAGGGCAACGGGCCGGCCTGGAAGTTTA
CCAGGGCGATGCTGCTGCCCGTCGCAACATGGATATGTTCTCCCTGCGAC
CGACACCAGCTCCAGGCTACGAATACGATGGTGCTTCAACGGAACAGACT
GGCGGATCAGCGGAGCGGCCCACTCCACAAAATCAACCGGGACCGGGAAA
TACTCCGCCGGCTCATAACACCAGCCAAGCTTCCGCTTCGCAGTCTCAGC
AATTCCAACAGCGACCCGGTGGCTATCAGCCGCCAAAATATGGTGACTCG
AATATTCGAAGATTGCAGGATACGAAGAAGGATGAAAAGGATAAGGACAA
GGCAACTTATAATGGAAACTCCACGCAGCAGCAATAGAAGCTTTCTAGAC
CAT
BS05436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8042-RA | 1971 | CG8042-PA | 1..1971 | 17..1987 | 9840 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8042-RA | 2173 | CG8042-RA | 89..2063 | 15..1989 | 9860 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7972946..7973585 | 1662..1023 | 3200 | 100 | Minus |
3L | 28110227 | 3L | 7973649..7974185 | 1025..489 | 2685 | 100 | Minus |
3L | 28110227 | 3L | 7972559..7972885 | 1989..1663 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 7974301..7974558 | 491..234 | 1290 | 100 | Minus |
3L | 28110227 | 3L | 7974628..7974763 | 233..98 | 680 | 100 | Minus |
3L | 28110227 | 3L | 7974819..7974903 | 99..15 | 410 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:55 has no hits.
BS05436.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:34 Download gff for
BS05436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-RA | 108..2078 | 17..1987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:52 Download gff for
BS05436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-RA | 91..2061 | 17..1987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:36 Download gff for
BS05436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-RA | 108..2078 | 17..1987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:56 Download gff for
BS05436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-RA | 91..2061 | 17..1987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:56 Download gff for
BS05436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7972561..7972885 | 1663..1987 | 100 | <- | Minus |
3L | 7972946..7973583 | 1025..1662 | 100 | <- | Minus |
3L | 7973650..7974182 | 492..1024 | 100 | <- | Minus |
3L | 7974301..7974558 | 234..491 | 100 | <- | Minus |
3L | 7974628..7974762 | 99..233 | 100 | <- | Minus |
3L | 7974820..7974901 | 17..98 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:52 Download gff for
BS05436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7965661..7965985 | 1663..1987 | 100 | <- | Minus |
arm_3L | 7966046..7966683 | 1025..1662 | 100 | <- | Minus |
arm_3L | 7966750..7967282 | 492..1024 | 100 | <- | Minus |
arm_3L | 7967401..7967658 | 234..491 | 100 | <- | Minus |
arm_3L | 7967728..7967862 | 99..233 | 100 | <- | Minus |
arm_3L | 7967920..7968001 | 17..98 | 98 | | Minus |
BS05436.3prime Sequence
791 bp (733 high quality bases) assembled on 2005-12-02
> BS05436.3prime
ATGGTCTAGAAAGCTTCTATTGCTGCTGCGTGGAGTTTCCATTATAAGTT
GCCTTGTCCTTATCCTTTTCATCCTTCTTCGTATCCTGCAATCTTCGAAT
ATTCGAGTCACCATATTTTGGCGGCTGATAGCCACCGGGTCGCTGTTGGA
ATTGCTGAGACTGCGAAGCGGAAGCTTGGCTGGTGTTATGAGCCGGCGGA
GTATTTCCCGGTCCCGGTTGATTTTGTGGAGTGGGCCGCTCCGCTGATCC
GCCAGTCTGTTCCGTTGAAGCACCATCGTATTCGTAGCCTGGAGCTGGTG
TCGGTCGCAGGGAGAACATATCCATGTTGCGACGGGCAGCAGCATCGCCC
TGGTAAACTTCCAGGCCGGCCCGTTGCCCTGGCCACCGGAAGTTGGCCAT
GAACACGCTCAGCTTCTGGGTGAGCGGTCGAAGACCCATCTTGTTTATGT
AGTCGAAAGCCTTGGCCGCCGGTGTGAGCAAAGCCCAAATTACGGTGCCC
AGCATGGTCATCAGGGAGCCACCGCTTTGAACCACACGATTCACTTGCTC
CTTGGTCAGCACCAGAACCACCGCATTGGGCACTAGATTTAGCTCGTTCA
GGGTCTTGACCTCGTCCTCCGTTTGGAACTCCCTTCGTGGGTAACTGGTA
GCCAGGGTAAAGTCGCGTACATCGCTCGCCGCCAGCATCTCGTTTCGCAC
GTAGACACGAACGGTAGCCAGCACCTCGCCGGCTGGAAAGGATTTGGTGC
GCTGAATGCCACCGGGTAGTCGGATCTGCAGCCTCGTCTCG
BS05436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8042-PA | 1971 | CG8042-RA | 1197..1971 | 791..17 | 3875 | 100 | Minus |
CG8042-PB | 1530 | CG8042-RB | 756..1530 | 791..17 | 3875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8042-RA | 2173 | CG8042-RA | 1287..2063 | 791..15 | 3885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7972946..7973395 | 342..791 | 2250 | 100 | Plus |
3L | 28110227 | 3L | 7972559..7972885 | 15..341 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:56:27 has no hits.
BS05436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:11 Download gff for
BS05436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-PB | 756..1530 | 17..791 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:37 Download gff for
BS05436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-PB | 756..1530 | 17..791 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:30:37 Download gff for
BS05436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-RA | 1287..2063 | 15..791 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:58 Download gff for
BS05436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-RA | 1287..2063 | 15..791 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:58 Download gff for
BS05436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7972559..7972885 | 15..341 | 100 | <- | Plus |
3L | 7972946..7973395 | 342..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:30:37 Download gff for
BS05436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7965659..7965985 | 15..341 | 100 | <- | Plus |
arm_3L | 7966046..7966495 | 342..791 | 100 | | Plus |
BS05436.5prime Sequence
808 bp (646 high quality bases) assembled on 2005-12-02
> BS05436.5prime
GAAGTTATCAGTCGACATGAACTGGCATAAGGGCAACATTGCGGAGGCCG
TGGCGGCATCAAAGGCCAAGGGCGCCGTGTTTGTCGTCTTCATCGAGGGC
CAGGACGAAATGACCCGAAAACTAGAGCGGTTCGTGGATGACAGTCAGGT
GCGCTCCCGCCTGGAAACCTCCGATTTTGTCGCCATCAAAGTCCAGGGAA
ATAGCTCCGCCTACGGACAGTTCATGTCGTTATACAAAATCGTGCCAATT
CCCTCGCTCTTCTTTATTGGCAAAACGGGTACACCTCTGGAGATAGCCAC
TGGGGTTACGGCCAGCGTAGATGAACTGACGGAAAAGATCGATAAGGTTC
TGATCCTGGCGGGAAAACGAACCGAGCCTGTGGCAGCCAGCAGCTCTTCA
TGTGCGAAGACACTTGACCCCAATGAAGTCAGGAGCTTCGCCGGAGCAGA
TGGCTCAAGCAGCACTGGGGAATCTCAAGTAGTTCAAACAGCATCAGAAA
ACTTTAGAGATCCTGAAACCACCTCAGTTTCAAACTCACCAACTGGAGGT
GTGGAGGAGGCCAAGACGAATCCACCAAATTCTCCTGTAGCAGCCAGCTT
GGCATCTATACCCGCTGCTGTATCAACCTCCAGTTTGGAAGGAAAATCAG
GATCAGAGGCAGAGGCTGCTTCTCCCACCGCTTTGGCGGCCGAAAAGAGA
GCAGCAGCGAGCAAAGTGGAGGGTTCAGCTACCACATCCGGGGCAGCTGC
TCGGAATTTTGCCACTAATAATCTTATACCGGCTGTGCCGCTAATGACAC
CTGCTGTC
BS05436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8042-PA | 1971 | CG8042-RA | 1..792 | 17..808 | 3935 | 99.8 | Plus |
CG8042-PB | 1530 | CG8042-RB | 92..351 | 549..808 | 1300 | 100 | Plus |
CG8042-PB | 1530 | CG8042-RB | 1..93 | 138..230 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8042-RA | 2173 | CG8042-RA | 89..882 | 15..808 | 3955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7973866..7974185 | 808..489 | 1600 | 100 | Minus |
3L | 28110227 | 3L | 7974301..7974558 | 491..234 | 1290 | 100 | Minus |
3L | 28110227 | 3L | 7974628..7974763 | 233..98 | 680 | 100 | Minus |
3L | 28110227 | 3L | 7974819..7974903 | 99..15 | 410 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:41:05 has no hits.
BS05436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:12 Download gff for
BS05436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:40 Download gff for
BS05436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:53 Download gff for
BS05436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-RA | 83..882 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:18 Download gff for
BS05436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8042-RA | 83..882 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:18 Download gff for
BS05436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7973866..7974182 | 492..808 | 100 | <- | Minus |
3L | 7974301..7974558 | 234..491 | 100 | <- | Minus |
3L | 7974628..7974762 | 99..233 | 100 | <- | Minus |
3L | 7974820..7974906 | 9..98 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:53 Download gff for
BS05436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7966966..7967282 | 492..808 | 100 | <- | Minus |
arm_3L | 7967401..7967658 | 234..491 | 100 | <- | Minus |
arm_3L | 7967728..7967862 | 99..233 | 100 | <- | Minus |
arm_3L | 7967920..7968006 | 9..98 | 94 | | Minus |
BS05436.pep Sequence
Translation from 16 to 1986
> BS05436.pep
MNWHKGNIAEAVAASKAKGAVFVVFIEGQDEMTRKLERFVDDSQVRSRLE
TSDFVAIKVQGNSSAYGQFMSLYKIVPIPSLFFIGKTGTPLEIATGVTAS
VDELTEKIDKVLILAGKRTEPVAASSSSCAKTLDPNEVRSFAGADGSSST
GESQVVQTASENFRDPETTSVSNSPTGGVEEAKTNPPNSPVAASLASIPA
AVSTSSLEGKSGSEAEAASPTALAAEKRAAASKVEGSATTSGAAARNFAT
NNLIPAVPLMTPAVPVPTQRPLEAQDNTESEERLAEVRNILEQKRKERVE
EEKRMEKENELRRRRDGREAQSQQARAKEQELKNMQEQIKRERQEELAAR
ERIRAQIAADRAEQAQRFNTPDISSTTNSVAATAASNVITTDASVSSVDE
TRLQIRLPGGIQRTKSFPAGEVLATVRVYVRNEMLAASDVRDFTLATSYP
RREFQTEDEVKTLNELNLVPNAVVLVLTKEQVNRVVQSGGSLMTMLGTVI
WALLTPAAKAFDYINKMGLRPLTQKLSVFMANFRWPGQRAGLEVYQGDAA
ARRNMDMFSLRPTPAPGYEYDGASTEQTGGSAERPTPQNQPGPGNTPPAH
NTSQASASQSQQFQQRPGGYQPPKYGDSNIRRLQDTKKDEKDKDKATYNG
NSTQQQ*
BS05436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8042-PA | 656 | CG8042-PA | 1..656 | 1..656 | 3279 | 100 | Plus |
CG8209-PA | 331 | CG8209-PA | 46..324 | 206..474 | 278 | 32.3 | Plus |