Clone Sequence Records
BS05438.3prime Sequence
812 bp (684 high quality bases) assembled on 2005-12-02
> BS05438.3prime
ATGGTCTAGAAAGCTTCTATTGGACATTATAGTGCGGTCCTGGCGTTGGC
ACACTCTTTAGCGGCGAATCAAACTCCATGGGCGGCGCTTCAATGACCGG
CGTCTCCGCCGCCCCGGTGCCGATTCTCTCCTGCAGAATTTCGTACAACT
TGTGGATGTGCTCGTTGTGGGCCGTCGTCGGCTGCATAGCCTTCATCAAT
GTGGCCAAACGACCGGCGGGCAGCTTATTGTGCACATACCACAAAAGTTT
CAGCATGTGACGAGAGGTCACATTCTCGCGCGTCAGTCCGGCAAAGATGA
ACTCGTCGAAGAGCGTGGTGCAGAAGTCCTCCGTGGCAAACTCTTCGCTC
ATGGGGATGAGCAGGGCAATCAGAGAGTGCAGGAAGGGATCCTCATATGC
GCGGTCGTCTTTGCAGGCGGACAGAATGGCCAAGACGCGCAACACGCCCA
CGCGATCCTTCAGGCGCGCCGTGTGCAGCGTATAGTACATGGCCAATATG
CTGGCCACGGAACTCTCTTGAATGTACGCCTCCACGGCATCCGGTGCCGG
TCCCGAATGCTCGATGGTGGTCAGAGCAGATTCACGCTCGTCCGGCGGTA
GTTTCGCGTGCAAGCTGCGGCACTGGTCGTCAACCATTAACGACATGAGG
GCGGGCAAAAACTTGGTGACCACCTGGCAATCAAGTTTGGGCTCCTTAAA
GTCTTGCGAATCGATCATCACCCCAGCACTCAAGCCCAAGGCCAACATTC
TCAACAACAGGATGAGTATCTGATTGTCACGCGGCATGCCCTCGTTGTTG
ATCAAGTGATGC
BS05438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32721-PA | 1785 | CG32721-RA | 990..1785 | 812..17 | 3930 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 2226 | CG32721-RA | 1068..1863 | 812..17 | 3950 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7726775..7727216 | 371..812 | 2180 | 99.5 | Plus |
| X | 23542271 | X | 7726359..7726713 | 17..371 | 1775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:12:05 has no hits.
BS05438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:15 Download gff for
BS05438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32721-PA | 990..1785 | 17..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:44 Download gff for
BS05438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32721-PA | 990..1785 | 17..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:13 Download gff for
BS05438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 1068..1863 | 17..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:52 Download gff for
BS05438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 1068..1863 | 17..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:52 Download gff for
BS05438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7726359..7726712 | 17..370 | 100 | <- | Plus |
| X | 7726775..7727216 | 371..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:13 Download gff for
BS05438.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7620392..7620745 | 17..370 | 100 | <- | Plus |
| arm_X | 7620808..7621249 | 371..812 | 99 | | Plus |
BS05438.5prime Sequence
861 bp (755 high quality bases) assembled on 2005-12-02
> BS05438.5prime
GAAGTTATCAGTCGACATGATAATGAGCACACCGGCGAAAAATAACAATG
GAACTGGACTGGAGGACGTGAATATTCCGGGTCAGGCCTATCTGCGCGAG
GCCCTGACCTCCTGCACTGATCCCTTGAAGGCCATCGAGAGTTTTCAGCT
TGAGAATGGTGTATTGCTGCCTTCACTGCGCCCCATGTTGCCTTTACTCG
ATTTGCACGGCGTGCGTCGACTGGACTTTCATACCTCGCTGATGGAGGAG
CTGCGCGACAAGCTGATAGCTCACATCAACGAGATGGGCCAAAAGGAGCC
CCGGGAGCGGGACAAGAAGCTCAAGGAGCTGCTCGTTAAGAGCTTCCCCG
TCGTTCGGGTGAAGTCGCTGCGGCCCGTGGTCATGGCCATATTGAGGAAT
ACCCAGCACATCGATGACAAGTACCTCAAAATCCTTGTAAGGGATCGGGA
ACTGTATGCGGACACGGATACGGAAGTTAAGCGGCAGATATGGCGTGATA
ATCAATCGTTGTTTGGTGACGAGGTGTCGCCTCTCCTCTCACAATATATT
CGCGAGAAGGAGCACATCCTGTTTGATCACACCAACTTGAACAATCTGTT
CTTCCACCCAACGCCCAAGGTGCGAAGGCAGGGGGAAGTAGTCCAAAAGT
TGGCCAACATGATTGGCACCAGTGTCAAGCTGTACGATATGGTGCTGCAG
TTCCTGCGCACTCTATTCCTGCGCACCCGCAATGTTCACTATTGCACGCT
GCGTGCAGAGCTACTGATGGCCTTACACGATCTCGAGGTGCAGGAGATCA
TCTCGATAGATCCCTGTCACAAGTTCACCTGGTGCCTGGACGCCTGCATA
AGGAAAAAAAT
BS05438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32721-PA | 1785 | CG32721-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 2226 | CG32721-RA | 78..915 | 16..853 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7727369..7728080 | 853..142 | 3545 | 99.9 | Minus |
| X | 23542271 | X | 7728152..7728284 | 148..16 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:52:05 has no hits.
BS05438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:16 Download gff for
BS05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32721-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:45 Download gff for
BS05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32721-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:23:14 Download gff for
BS05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 78..924 | 16..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:48:14 Download gff for
BS05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 78..924 | 16..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:48:14 Download gff for
BS05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7727360..7728073 | 149..861 | 99 | <- | Minus |
| X | 7728152..7728284 | 16..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:23:14 Download gff for
BS05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7621393..7622106 | 149..861 | 99 | <- | Minus |
| arm_X | 7622185..7622317 | 16..148 | 100 | | Minus |
BS05438.complete Sequence
1817 bp assembled on 2008-01-02
GenBank Submission: FJ638781
> BS05438.complete
GAAGTTATCAGTCGACATGATAATGAGCACACCGGCGAAAAATAACAATG
GAACTGGACTGGAGGACGTGAATATTCCGGGTCAGGCCTATCTGCGCGAG
GCCCTGACCTCCTGCACTGATCCCTTGAAGGCCATCGAGAGTTTTCAGCT
TGAGAATGGTGTATTGCTGCCTTCACTGCGCCCCATGTTGCCTTTACTCG
ATTTGCACGGCGTGCGTCGACTGGACTTTCATACCTCGCTGATGGAGGAG
CTGCGCGACAAGCTGATAGCTCACATCAACGAGATGGGCCAAAAGGAGCC
CCGGGAGCGGGACAAGAAGCTCAAGGAGCTGCTCGTTAAGAGCTTCCCCG
TCGTTCGGGTGAAGTCGCTGCGGCCCGTGGTCATGGCCATATTGAGGAAT
ACCCAGCACATCGATGACAAGTACCTCAAAATCCTTGTAAGGGATCGGGA
ACTGTATGCGGACACGGATACGGAAGTTAAGCGGCAGATATGGCGTGATA
ATCAATCGTTGTTTGGTGACGAGGTGTCGCCTCTCCTCTCACAATATATT
CGCGAGAAGGAGCACATCCTGTTTGATCACACCAACTTGAACAATCTGTT
CTTCCACCCAACGCCCAAGGTGCGAAGGCAGGGGGAAGTAGTCCAAAAGT
TGGCCAACATGATTGGCACCAGTGTCAAGCTGTACGATATGGTGCTGCAG
TTCCTGCGCACTCTATTCCTGCGCACCCGCAATGTTCACTATTGCACGCT
GCGTGCAGAGCTACTGATGGCCTTACACGATCTCGAGGTGCAGGAGATCA
TCTCGATAGATCCCTGTCACAAGTTCACCTGGTGCCTGGACGCCTGCATA
AGGGAGAAGAATGTGGACATTAAACGTTCACGGGAGCTCCAGGGATTTCT
TGACAACATCAAGCGCGGTCAGGAGCAGGTTCTGGGCGATCTGTCCATGA
CTTTGTGCGATCCGTATGCCATCAACTTTTTGGCCACGTCGGCCATCAAG
ATATTGCATCACTTGATCAACAACGAGGGCATGCCGCGTGACAATCAGAT
ACTCATCCTGTTGTTGAGAATGTTGGCCTTGGGCTTGAGTGCCTGGGTGA
TGATCGATTCGCAAGACTTTAAGGAGCCCAAACTTGATTGCCAGGTGGTC
ACCAAGTTTTTGCCCGCCCTCATGTCGTTAATGGTTGACGACCAGTGCCG
CAGCTTGCACGCGAAACTACCGCCGGACGAGCGTGAATCTGCTCTGACCA
CCATCGAGCATTCGGGACCGGCACCGGATGCCGTGGAGGCGTACATTCAA
GAGAGTTCCGTGGCCAGCATATTGGCCATGTACTATACGCTGCACACGGC
GCGCCTGAAGGATCGCGTGGGCGTGTTGCGCGTCTTGGCCATTCTGTCCG
CCTGCAAAGACGACCGCGCATATGAGGATCCCTTCCTGCACTCTCTGATT
GCCCTGCTCATCCCCATGAGCGAAGAGTTTGCCACGGAGGACTTCTGCAC
CACGCTCTTCGACGAGTTCATCTTTGCCGGACTGACGCGCGAGAATGTGA
CCTCTCGTCACATGCTGAAACTTTTGTGGTATGTGCACAATAAGCTGCCC
GCCGGTCGTTTGGCCACATTGATGAAGGCTATGCAGCCGACGACGGCCCA
CAACGAGCACATCCACAAGTTGTACGAAATTCTGCAGGAGAGAATCGGCA
CCGGGGCGGCGGAGACGCCGGTCATTGAAGCGCCGCCCATGGAGTTTGAT
TCGCCGCTAAAGAGTGTGCCAACGCCAGGACCGCACTATAATGTCCAATA
GAAGCTTTCTAGACCAT
BS05438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 1785 | CG32721-PA | 1..1785 | 17..1801 | 8925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 2226 | CG32721-RA | 78..1863 | 16..1801 | 8930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7726775..7728080 | 1447..142 | 6515 | 99.9 | Minus |
| X | 23542271 | X | 7726359..7726713 | 1801..1447 | 1775 | 100 | Minus |
| X | 23542271 | X | 7728152..7728284 | 148..16 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:28:06 has no hits.
BS05438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:52 Download gff for
BS05438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 1..1785 | 17..1801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:31 Download gff for
BS05438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 40..1824 | 17..1801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:51 Download gff for
BS05438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 79..1863 | 17..1801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:52 Download gff for
BS05438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 39..1824 | 16..1801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:30 Download gff for
BS05438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 79..1863 | 17..1801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:30 Download gff for
BS05438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7728152..7728283 | 17..148 | 100 | | Minus |
| X | 7726775..7728073 | 149..1447 | 100 | <- | Minus |
| X | 7726359..7726712 | 1448..1801 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:51 Download gff for
BS05438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7620392..7620745 | 1448..1801 | 100 | <- | Minus |
| arm_X | 7620808..7622106 | 149..1447 | 100 | <- | Minus |
| arm_X | 7622185..7622316 | 17..148 | 100 | | Minus |
BS05438.pep Sequence
Translation from 16 to 1800
> BS05438.pep
MIMSTPAKNNNGTGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVL
LPSLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKEPRERDK
KLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILVRDRELYADT
DTEVKRQIWRDNQSLFGDEVSPLLSQYIREKEHILFDHTNLNNLFFHPTP
KVRRQGEVVQKLANMIGTSVKLYDMVLQFLRTLFLRTRNVHYCTLRAELL
MALHDLEVQEIISIDPCHKFTWCLDACIREKNVDIKRSRELQGFLDNIKR
GQEQVLGDLSMTLCDPYAINFLATSAIKILHHLINNEGMPRDNQILILLL
RMLALGLSAWVMIDSQDFKEPKLDCQVVTKFLPALMSLMVDDQCRSLHAK
LPPDERESALTTIEHSGPAPDAVEAYIQESSVASILAMYYTLHTARLKDR
VGVLRVLAILSACKDDRAYEDPFLHSLIALLIPMSEEFATEDFCTTLFDE
FIFAGLTRENVTSRHMLKLLWYVHNKLPAGRLATLMKAMQPTTAHNEHIH
KLYEILQERIGTGAAETPVIEAPPMEFDSPLKSVPTPGPHYNVQ*
BS05438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-PA | 594 | CG32721-PA | 1..594 | 1..594 | 3070 | 100 | Plus |
