Clone BS05440 Report

Search the DGRC for BS05440

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG6495-RA
Protein status:BS05440.pep: full length peptide match
Sequenced Size:2060

Clone Sequence Records

BS05440.complete Sequence

2060 bp assembled on 2009-12-07

GenBank Submission: KX797714

> BS05440.complete
GAAGTTATCAGTCGTCATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGA
TGATCGCGGAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTAC
CTGCAATCTTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGA
GGTGTGCATAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGG
GAGAGTCGCAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGAC
ACCATCGAGGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGT
GTACATCTTCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCG
GTCCTCCGGAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACG
AGTGCCGTGCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCAC
ACCGCGTCCGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGG
AATGGGAGCTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCC
ACTGTTTCCACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGG
AACGGGAGTGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAA
GTGTTCCCGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGC
GAGTGCATCGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGA
TGGCAGCGACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAA
AACCGGCCACTACCAGCAGCAATTTGGAGCCCGTGAAGCCGATGGTGTCG
CAGTATGTGCCCGTGCAGAACGTGCAACAGACACAGCAGGTCGTGGCCCA
GCAGATGCAGCAGCAGCAACCGCAGCAGCAACAGCAACAGCCGCAGCAGC
AACCACAACATGTCATTGTTTTGGGACCACCACCGCCACCGCCGCCTCCA
CCGCCCATGGTGAACAATCGTGAAGATGCCGCTGCCTGGGCCAACCGCAA
GATGATTGCCGAAGGGCAGCAGCAGCTGCCGCAGCAGCAACTGCAACAGC
AACAGCAGCAACAATCATCGCAGCCAAAGACGGAGATCATCAACACGGAT
GCACAGAGCCACATATTTAGCCATAAAGGCGGCCTCCAGCTGCAGCAGCC
CGCAAACGGACAGGGTCCACCGCCGTCGCCACTCCAGGTTCCGGGTCAGA
TGGCGGGAGCAGGTCAGGTTCAGGTTCAGGGGCAATCCCCAACGCTGCAA
CTGCCCGGCTACGAGGCCAACCAGGCTGTATACGGGATGTCACGCACAGG
AATCTACATGCCACAGCAGCCGGCGCAACTCCAGGCTCCAGCTGGCCAAC
AGCAGCAGCAGGTGCAAGCGAGTGTGGTGTGGCCACAGCAGGCTCCATTA
ATTCCGCAGCAACAGTCGCCCGTGCAGCAGTCGCAGTCCCTGATGCCCCA
GCAATCTGGTCATGTCTATGCCGCCGCTGCTCCGGCCATCCAATCTCCGC
CAGCTGCGCAGCAAGCCATGTTGCCAGTCCTAAATGCAGCACCCGTAGCT
GGGAAAAATCAGGGTCCAGCGGCAGATGGGGACTACGATGATTACGATGA
GGAAACGTACACGGAGGCACCAAAAAAGAAGCAGCACAAACACAAGAAGG
TCAAGACGAAGACGGCCAAGGATCCCATTGAACTTGCCCTGGAGCAAAAC
AAGTTGCAACCGGAGGGATCCCTTCCAGCCCTGCCGGTTCCCGCTTCCCC
CGTCCACGAGCAGTACAAGATGATCCATGACAACCTGGCGATGGAGTTCC
GCGATCACGACGGTCACTCGGAGCGACCTGGCGGGGCGGTCCTCTCGCTG
ACTCTGGGCCTGCTGGTCACCGCTGCGCTGGCCATTCTTATCGGGTGCAG
GATGCGGACGGTGACGCGGAGGGCACGACGACTGGGCGGCAAGACGCCCT
ACTCACAGGAGGCGGACTTCCTGGTCAACGGCATGTATCTGTAAAAGCTT
TCTAGACCAT

BS05440.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-RA 2028 CG6495-PA 1..2028 17..2044 10125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-RA 2581 CG6495-RA 391..2418 17..2044 10125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10763859..10764386 1151..1678 2640 100 Plus
2L 23513712 2L 10761825..10762318 160..653 2470 100 Plus
2L 23513712 2L 10762716..10763091 773..1148 1880 100 Plus
2L 23513712 2L 10764441..10764808 1677..2044 1840 100 Plus
2L 23513712 2L 10761506..10761652 17..163 735 100 Plus
2L 23513712 2L 10762525..10762644 653..772 600 100 Plus
Blast to na_te.dros performed 2014-11-28 02:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2415 1315..1469 144 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6912 1350..1503 143 60.5 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 898..937 983..1022 119 77.5 Plus

BS05440.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:35 Download gff for BS05440.complete
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 360..2385 17..2042 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:56 Download gff for BS05440.complete
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 391..2416 17..2042 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:06 Download gff for BS05440.complete
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 360..2385 17..2042 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:41 Download gff for BS05440.complete
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 391..2416 17..2042 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:41 Download gff for BS05440.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10761506..10761650 17..161 100 -> Plus
2L 10761827..10762318 162..653 100 -> Plus
2L 10762526..10762644 654..772 100 -> Plus
2L 10762716..10763091 773..1148 100 -> Plus
2L 10763857..10764386 1149..1678 99 -> Plus
2L 10764443..10764806 1679..2042 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:56 Download gff for BS05440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10761506..10761650 17..161 100 -> Plus
arm_2L 10761827..10762318 162..653 100 -> Plus
arm_2L 10762526..10762644 654..772 100 -> Plus
arm_2L 10762716..10763091 773..1148 100 -> Plus
arm_2L 10763857..10764386 1149..1678 99 -> Plus
arm_2L 10764443..10764806 1679..2042 100   Plus

BS05440.3prime Sequence

788 bp (735 high quality bases) assembled on 2005-12-02

> BS05440.3prime
ATGGTCTAGAAAGCTTTTACAGATACATGCCGTTGACCAGGAAGTCCGCC
TCCTGTGAGTAGGGCGTCTTGCCGCCCAGTCGTCGTGCCCTCCGCGTCAC
CGTCCGCATCCTGCACCCGATAAGAATGGCCAGCGCAGCGGTGACCAGCA
GGCCCAGAGTCAGCGAGAGGACCGCCCCGCCAGGTCGCTCCGAGTGACCG
TCGTGATCGCGGAACTCCATCGCCAGGTTGTCATGGATCATCTTGTACTG
CTCGTGGACGGGGGAAGCGGGAACCGGCAGGGCTGGAAGGGATCCCTCCG
GTTGCAACTTGTTTTGCTCCAGGGCAAGTTCAATGGGATCCTTGGCCGTC
TTCGTCTTGACCTTCTTGTGTTTGTGCTGCTTCTTTTTTGGTGCCTCCGT
GTACGTTTCCTCATCGTAATCATCGTAGTCCCCATCTGCCGCTGGACCCT
GATTTTTCCCAGCTACGGGTGCTGCATTTAGGACTGGCAACATGGCTTGC
TGCGCAGCTGGCGGAGATTGGATGGCCGGAGCAGCGGCGGCATAGACATG
ACCAGATTGCTGGGGCATCAGGGACTGCGACTGCTGCACGGGCGACTGTT
GCTGCGGAATTAATGGAGCCTGCTGTGGCCACACCACACTCGCTTGCACC
TGCTGCTGCTGTTGGCCAGCTGGAGCCTGGAGTTGCGCCGGCTGCTGTGG
CATGTAGATTCCTGTGCGTGACATCCCGTATACAGCCTGGTTGGCCTCGT
AGCCGGGCAGTTGCAGCGTTGGGGATTGCCCCTGAACC

BS05440.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-PA 2028 CG6495-RA 1257..2028 788..17 3860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-RA 2581 CG6495-RA 1647..2418 788..17 3860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10763981..10764386 788..383 2030 100 Minus
2L 23513712 2L 10764441..10764808 384..17 1840 100 Minus
Blast to na_te.dros performed 2015-01-30 15:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2415 746..592 144 59.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6912 711..558 143 60.5 Minus

BS05440.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:19 Download gff for BS05440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-PA 1257..2028 17..788 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:50 Download gff for BS05440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-PA 1257..2028 17..788 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:14:13 Download gff for BS05440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 1647..2420 13..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:53 Download gff for BS05440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 1647..2420 13..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:53 Download gff for BS05440.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10763981..10764386 383..788 100 -> Minus
2L 10764443..10764810 13..382 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:14:13 Download gff for BS05440.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10763981..10764386 383..788 100 -> Minus
arm_2L 10764443..10764810 13..382 99   Minus

BS05440.5prime Sequence

906 bp (794 high quality bases) assembled on 2005-12-02

> BS05440.5prime
GAAGTTATCAGTCGTCATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGA
TGATCGCGGAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTAC
CTGCAATCTTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGA
GGTGTGCATAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGG
GAGAGTCGCAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGAC
ACCATCGAGGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGT
GTACATCTTCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCG
GTCCTCCGGAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACG
AGTGCCGTGCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCAC
ACCGCGTCCGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGG
AATGGGAGCTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCC
ACTGTTTCCACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGG
AACGGGAGTGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAA
GTGTTCCCGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGC
GAGTGCATCGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGA
TGGCAGCGACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAA
AACCGGCCACTACCAGCAGCAATTTGGAGCCCGTGAAGCCGATGGTGTCG
CAGTATGTGCCCGTGCAGAACGTGCAACAGACACAGCAGGTCGTGGCCCA
GCAGAT

BS05440.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-PA 2028 CG6495-RA 1..890 17..906 4450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-RA 2581 CG6495-RA 391..1280 17..906 4450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10761825..10762318 160..653 2470 100 Plus
2L 23513712 2L 10761506..10761652 17..163 735 100 Plus
2L 23513712 2L 10762716..10762849 773..906 670 100 Plus
2L 23513712 2L 10762525..10762644 653..772 600 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:11:38 has no hits.

BS05440.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:20 Download gff for BS05440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:51 Download gff for BS05440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:56:21 Download gff for BS05440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 379..1280 5..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:00 Download gff for BS05440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 379..1280 5..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:00 Download gff for BS05440.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10761494..10761650 5..161 96 -> Plus
2L 10761827..10762318 162..653 100 -> Plus
2L 10762526..10762644 654..772 100 -> Plus
2L 10762716..10762849 773..906 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:56:21 Download gff for BS05440.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10761494..10761650 5..161 96 -> Plus
arm_2L 10761827..10762318 162..653 100 -> Plus
arm_2L 10762526..10762644 654..772 100 -> Plus
arm_2L 10762716..10762849 773..906 100   Plus

BS05440.pep Sequence

Translation from 16 to 2043

> BS05440.pep
MIANLALPFLLMIAEAAATAEQVKYLEYLQSSPAEHRLSKRMDLEVCIGH
FDVHKNTIIRTGESQAIGGKYLQGIELDTIEECERLCCETDACDVYIFER
KAGGYCYLFECGPPEDFRCKFTRHANYTSAVLNPQPKPVGELVTTPRPQL
PHIPSNNVSQQEWELSNLKLKPEARDKPTVSTAAVVAPTSGTGTGTGVGL
GVGQSPVYQSQSVPAAHCGRFQFTCHSGECIAVYNACDGIPQCEDGSDEG
PECNIVLSTATKPATTSSNLEPVKPMVSQYVPVQNVQQTQQVVAQQMQQQ
QPQQQQQQPQQQPQHVIVLGPPPPPPPPPPMVNNREDAAAWANRKMIAEG
QQQLPQQQLQQQQQQQSSQPKTEIINTDAQSHIFSHKGGLQLQQPANGQG
PPPSPLQVPGQMAGAGQVQVQGQSPTLQLPGYEANQAVYGMSRTGIYMPQ
QPAQLQAPAGQQQQQVQASVVWPQQAPLIPQQQSPVQQSQSLMPQQSGHV
YAAAAPAIQSPPAAQQAMLPVLNAAPVAGKNQGPAADGDYDDYDEETYTE
APKKKQHKHKKVKTKTAKDPIELALEQNKLQPEGSLPALPVPASPVHEQY
KMIHDNLAMEFRDHDGHSERPGGAVLSLTLGLLVTAALAILIGCRMRTVT
RRARRLGGKTPYSQEADFLVNGMYL*

BS05440.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-PA 675 CG6495-PA 1..675 1..675 3561 100 Plus
ptip-PA 2294 CG32133-PA 795..1037 267..530 206 29.7 Plus
Wnk-PN 2441 CG7177-PN 987..1306 284..603 203 29.3 Plus
Wnk-PL 2441 CG7177-PL 987..1306 284..603 203 29.3 Plus
Wnk-PM 2462 CG7177-PM 987..1306 284..603 203 29.3 Plus
ptip-PA 2294 CG32133-PA 849..1117 263..496 196 29.4 Plus
ptip-PA 2294 CG32133-PA 700..915 279..488 193 31.7 Plus
ptip-PA 2294 CG32133-PA 1147..1438 275..602 190 28.7 Plus
ptip-PA 2294 CG32133-PA 559..906 264..570 187 26.1 Plus
Wnk-PN 2441 CG7177-PN 1054..1397 271..582 173 26.2 Plus
Wnk-PL 2441 CG7177-PL 1054..1397 271..582 173 26.2 Plus
ptip-PA 2294 CG32133-PA 439..749 241..512 172 26.6 Plus
ptip-PA 2294 CG32133-PA 408..654 271..512 169 29.3 Plus
ptip-PA 2294 CG32133-PA 198..449 259..512 164 29.2 Plus