Clone Sequence Records
BS05440.complete Sequence
2060 bp assembled on 2009-12-07
GenBank Submission: KX797714
> BS05440.complete
GAAGTTATCAGTCGTCATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGA
TGATCGCGGAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTAC
CTGCAATCTTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGA
GGTGTGCATAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGG
GAGAGTCGCAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGAC
ACCATCGAGGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGT
GTACATCTTCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCG
GTCCTCCGGAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACG
AGTGCCGTGCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCAC
ACCGCGTCCGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGG
AATGGGAGCTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCC
ACTGTTTCCACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGG
AACGGGAGTGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAA
GTGTTCCCGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGC
GAGTGCATCGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGA
TGGCAGCGACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAA
AACCGGCCACTACCAGCAGCAATTTGGAGCCCGTGAAGCCGATGGTGTCG
CAGTATGTGCCCGTGCAGAACGTGCAACAGACACAGCAGGTCGTGGCCCA
GCAGATGCAGCAGCAGCAACCGCAGCAGCAACAGCAACAGCCGCAGCAGC
AACCACAACATGTCATTGTTTTGGGACCACCACCGCCACCGCCGCCTCCA
CCGCCCATGGTGAACAATCGTGAAGATGCCGCTGCCTGGGCCAACCGCAA
GATGATTGCCGAAGGGCAGCAGCAGCTGCCGCAGCAGCAACTGCAACAGC
AACAGCAGCAACAATCATCGCAGCCAAAGACGGAGATCATCAACACGGAT
GCACAGAGCCACATATTTAGCCATAAAGGCGGCCTCCAGCTGCAGCAGCC
CGCAAACGGACAGGGTCCACCGCCGTCGCCACTCCAGGTTCCGGGTCAGA
TGGCGGGAGCAGGTCAGGTTCAGGTTCAGGGGCAATCCCCAACGCTGCAA
CTGCCCGGCTACGAGGCCAACCAGGCTGTATACGGGATGTCACGCACAGG
AATCTACATGCCACAGCAGCCGGCGCAACTCCAGGCTCCAGCTGGCCAAC
AGCAGCAGCAGGTGCAAGCGAGTGTGGTGTGGCCACAGCAGGCTCCATTA
ATTCCGCAGCAACAGTCGCCCGTGCAGCAGTCGCAGTCCCTGATGCCCCA
GCAATCTGGTCATGTCTATGCCGCCGCTGCTCCGGCCATCCAATCTCCGC
CAGCTGCGCAGCAAGCCATGTTGCCAGTCCTAAATGCAGCACCCGTAGCT
GGGAAAAATCAGGGTCCAGCGGCAGATGGGGACTACGATGATTACGATGA
GGAAACGTACACGGAGGCACCAAAAAAGAAGCAGCACAAACACAAGAAGG
TCAAGACGAAGACGGCCAAGGATCCCATTGAACTTGCCCTGGAGCAAAAC
AAGTTGCAACCGGAGGGATCCCTTCCAGCCCTGCCGGTTCCCGCTTCCCC
CGTCCACGAGCAGTACAAGATGATCCATGACAACCTGGCGATGGAGTTCC
GCGATCACGACGGTCACTCGGAGCGACCTGGCGGGGCGGTCCTCTCGCTG
ACTCTGGGCCTGCTGGTCACCGCTGCGCTGGCCATTCTTATCGGGTGCAG
GATGCGGACGGTGACGCGGAGGGCACGACGACTGGGCGGCAAGACGCCCT
ACTCACAGGAGGCGGACTTCCTGGTCAACGGCATGTATCTGTAAAAGCTT
TCTAGACCAT
BS05440.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-RA | 2028 | CG6495-PA | 1..2028 | 17..2044 | 10125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-RA | 2581 | CG6495-RA | 391..2418 | 17..2044 | 10125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10763859..10764386 | 1151..1678 | 2640 | 100 | Plus |
2L | 23513712 | 2L | 10761825..10762318 | 160..653 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 10762716..10763091 | 773..1148 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 10764441..10764808 | 1677..2044 | 1840 | 100 | Plus |
2L | 23513712 | 2L | 10761506..10761652 | 17..163 | 735 | 100 | Plus |
2L | 23513712 | 2L | 10762525..10762644 | 653..772 | 600 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2264..2415 | 1315..1469 | 144 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6912 | 1350..1503 | 143 | 60.5 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 898..937 | 983..1022 | 119 | 77.5 | Plus |
BS05440.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:35 Download gff for
BS05440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 360..2385 | 17..2042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:56 Download gff for
BS05440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 391..2416 | 17..2042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:06 Download gff for
BS05440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 360..2385 | 17..2042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:41 Download gff for
BS05440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 391..2416 | 17..2042 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:41 Download gff for
BS05440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10761506..10761650 | 17..161 | 100 | -> | Plus |
2L | 10761827..10762318 | 162..653 | 100 | -> | Plus |
2L | 10762526..10762644 | 654..772 | 100 | -> | Plus |
2L | 10762716..10763091 | 773..1148 | 100 | -> | Plus |
2L | 10763857..10764386 | 1149..1678 | 99 | -> | Plus |
2L | 10764443..10764806 | 1679..2042 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:56 Download gff for
BS05440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10761506..10761650 | 17..161 | 100 | -> | Plus |
arm_2L | 10761827..10762318 | 162..653 | 100 | -> | Plus |
arm_2L | 10762526..10762644 | 654..772 | 100 | -> | Plus |
arm_2L | 10762716..10763091 | 773..1148 | 100 | -> | Plus |
arm_2L | 10763857..10764386 | 1149..1678 | 99 | -> | Plus |
arm_2L | 10764443..10764806 | 1679..2042 | 100 | | Plus |
BS05440.3prime Sequence
788 bp (735 high quality bases) assembled on 2005-12-02
> BS05440.3prime
ATGGTCTAGAAAGCTTTTACAGATACATGCCGTTGACCAGGAAGTCCGCC
TCCTGTGAGTAGGGCGTCTTGCCGCCCAGTCGTCGTGCCCTCCGCGTCAC
CGTCCGCATCCTGCACCCGATAAGAATGGCCAGCGCAGCGGTGACCAGCA
GGCCCAGAGTCAGCGAGAGGACCGCCCCGCCAGGTCGCTCCGAGTGACCG
TCGTGATCGCGGAACTCCATCGCCAGGTTGTCATGGATCATCTTGTACTG
CTCGTGGACGGGGGAAGCGGGAACCGGCAGGGCTGGAAGGGATCCCTCCG
GTTGCAACTTGTTTTGCTCCAGGGCAAGTTCAATGGGATCCTTGGCCGTC
TTCGTCTTGACCTTCTTGTGTTTGTGCTGCTTCTTTTTTGGTGCCTCCGT
GTACGTTTCCTCATCGTAATCATCGTAGTCCCCATCTGCCGCTGGACCCT
GATTTTTCCCAGCTACGGGTGCTGCATTTAGGACTGGCAACATGGCTTGC
TGCGCAGCTGGCGGAGATTGGATGGCCGGAGCAGCGGCGGCATAGACATG
ACCAGATTGCTGGGGCATCAGGGACTGCGACTGCTGCACGGGCGACTGTT
GCTGCGGAATTAATGGAGCCTGCTGTGGCCACACCACACTCGCTTGCACC
TGCTGCTGCTGTTGGCCAGCTGGAGCCTGGAGTTGCGCCGGCTGCTGTGG
CATGTAGATTCCTGTGCGTGACATCCCGTATACAGCCTGGTTGGCCTCGT
AGCCGGGCAGTTGCAGCGTTGGGGATTGCCCCTGAACC
BS05440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-PA | 2028 | CG6495-RA | 1257..2028 | 788..17 | 3860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-RA | 2581 | CG6495-RA | 1647..2418 | 788..17 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10763981..10764386 | 788..383 | 2030 | 100 | Minus |
2L | 23513712 | 2L | 10764441..10764808 | 384..17 | 1840 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 15:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2264..2415 | 746..592 | 144 | 59.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6912 | 711..558 | 143 | 60.5 | Minus |
BS05440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:19 Download gff for
BS05440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-PA | 1257..2028 | 17..788 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:50 Download gff for
BS05440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-PA | 1257..2028 | 17..788 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:14:13 Download gff for
BS05440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 1647..2420 | 13..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:53 Download gff for
BS05440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 1647..2420 | 13..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:53 Download gff for
BS05440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10763981..10764386 | 383..788 | 100 | -> | Minus |
2L | 10764443..10764810 | 13..382 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:14:13 Download gff for
BS05440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10763981..10764386 | 383..788 | 100 | -> | Minus |
arm_2L | 10764443..10764810 | 13..382 | 99 | | Minus |
BS05440.5prime Sequence
906 bp (794 high quality bases) assembled on 2005-12-02
> BS05440.5prime
GAAGTTATCAGTCGTCATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGA
TGATCGCGGAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTAC
CTGCAATCTTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGA
GGTGTGCATAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGG
GAGAGTCGCAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGAC
ACCATCGAGGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGT
GTACATCTTCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCG
GTCCTCCGGAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACG
AGTGCCGTGCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCAC
ACCGCGTCCGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGG
AATGGGAGCTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCC
ACTGTTTCCACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGG
AACGGGAGTGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAA
GTGTTCCCGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGC
GAGTGCATCGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGA
TGGCAGCGACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAA
AACCGGCCACTACCAGCAGCAATTTGGAGCCCGTGAAGCCGATGGTGTCG
CAGTATGTGCCCGTGCAGAACGTGCAACAGACACAGCAGGTCGTGGCCCA
GCAGAT
BS05440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-PA | 2028 | CG6495-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-RA | 2581 | CG6495-RA | 391..1280 | 17..906 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10761825..10762318 | 160..653 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 10761506..10761652 | 17..163 | 735 | 100 | Plus |
2L | 23513712 | 2L | 10762716..10762849 | 773..906 | 670 | 100 | Plus |
2L | 23513712 | 2L | 10762525..10762644 | 653..772 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:11:38 has no hits.
BS05440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:20 Download gff for
BS05440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:51 Download gff for
BS05440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:56:21 Download gff for
BS05440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 379..1280 | 5..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:00 Download gff for
BS05440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 379..1280 | 5..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:00 Download gff for
BS05440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10761494..10761650 | 5..161 | 96 | -> | Plus |
2L | 10761827..10762318 | 162..653 | 100 | -> | Plus |
2L | 10762526..10762644 | 654..772 | 100 | -> | Plus |
2L | 10762716..10762849 | 773..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:56:21 Download gff for
BS05440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10761494..10761650 | 5..161 | 96 | -> | Plus |
arm_2L | 10761827..10762318 | 162..653 | 100 | -> | Plus |
arm_2L | 10762526..10762644 | 654..772 | 100 | -> | Plus |
arm_2L | 10762716..10762849 | 773..906 | 100 | | Plus |
BS05440.pep Sequence
Translation from 16 to 2043
> BS05440.pep
MIANLALPFLLMIAEAAATAEQVKYLEYLQSSPAEHRLSKRMDLEVCIGH
FDVHKNTIIRTGESQAIGGKYLQGIELDTIEECERLCCETDACDVYIFER
KAGGYCYLFECGPPEDFRCKFTRHANYTSAVLNPQPKPVGELVTTPRPQL
PHIPSNNVSQQEWELSNLKLKPEARDKPTVSTAAVVAPTSGTGTGTGVGL
GVGQSPVYQSQSVPAAHCGRFQFTCHSGECIAVYNACDGIPQCEDGSDEG
PECNIVLSTATKPATTSSNLEPVKPMVSQYVPVQNVQQTQQVVAQQMQQQ
QPQQQQQQPQQQPQHVIVLGPPPPPPPPPPMVNNREDAAAWANRKMIAEG
QQQLPQQQLQQQQQQQSSQPKTEIINTDAQSHIFSHKGGLQLQQPANGQG
PPPSPLQVPGQMAGAGQVQVQGQSPTLQLPGYEANQAVYGMSRTGIYMPQ
QPAQLQAPAGQQQQQVQASVVWPQQAPLIPQQQSPVQQSQSLMPQQSGHV
YAAAAPAIQSPPAAQQAMLPVLNAAPVAGKNQGPAADGDYDDYDEETYTE
APKKKQHKHKKVKTKTAKDPIELALEQNKLQPEGSLPALPVPASPVHEQY
KMIHDNLAMEFRDHDGHSERPGGAVLSLTLGLLVTAALAILIGCRMRTVT
RRARRLGGKTPYSQEADFLVNGMYL*
BS05440.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-PA | 675 | CG6495-PA | 1..675 | 1..675 | 3561 | 100 | Plus |
ptip-PA | 2294 | CG32133-PA | 795..1037 | 267..530 | 206 | 29.7 | Plus |
Wnk-PN | 2441 | CG7177-PN | 987..1306 | 284..603 | 203 | 29.3 | Plus |
Wnk-PL | 2441 | CG7177-PL | 987..1306 | 284..603 | 203 | 29.3 | Plus |
Wnk-PM | 2462 | CG7177-PM | 987..1306 | 284..603 | 203 | 29.3 | Plus |
ptip-PA | 2294 | CG32133-PA | 849..1117 | 263..496 | 196 | 29.4 | Plus |
ptip-PA | 2294 | CG32133-PA | 700..915 | 279..488 | 193 | 31.7 | Plus |
ptip-PA | 2294 | CG32133-PA | 1147..1438 | 275..602 | 190 | 28.7 | Plus |
ptip-PA | 2294 | CG32133-PA | 559..906 | 264..570 | 187 | 26.1 | Plus |
Wnk-PN | 2441 | CG7177-PN | 1054..1397 | 271..582 | 173 | 26.2 | Plus |
Wnk-PL | 2441 | CG7177-PL | 1054..1397 | 271..582 | 173 | 26.2 | Plus |
ptip-PA | 2294 | CG32133-PA | 439..749 | 241..512 | 172 | 26.6 | Plus |
ptip-PA | 2294 | CG32133-PA | 408..654 | 271..512 | 169 | 29.3 | Plus |
ptip-PA | 2294 | CG32133-PA | 198..449 | 259..512 | 164 | 29.2 | Plus |