Clone BS05442 Report

Search the DGRC for BS05442

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG7927-RA
Protein status:BS05442.pep: full length peptide match
Sequenced Size:2141

Clone Sequence Records

BS05442.3prime Sequence

953 bp (818 high quality bases) assembled on 2005-12-02

> BS05442.3prime
ATGGTCTAGAAAGCTTCTAGTCAATGTAGTCACTGGAGCCCTCCTCCTCG
TCGTTGCTGCTCGTGGATTGTGCCGCCGCCGTTTCCGGCGAACGCAAGTG
CTCTGCAATCCGGAAGTTTTGCAGGAAGTCTCGCATCGCGTCCATCATTA
GCGTTAATGACTGCTGCAAACCAGCTTCTTCTCCTTCGCCAGCTACGCCG
GCAGCTCCTTGTTCAATGCCCACTTCAATGTTAGCATCGCCTGCAGCTGC
TCCCGCACCTGCTGCTGGTGCTGCTCCTTCTTGTAGCTGAGCATTTGCAG
CTAGGTTGTTAATGTTAAACGAAGGCAAGAGCGATTGAAAGAACATTGAC
ACAGAATTGTTCGTGTTCGTTGTGGGGCTGCTGCTTGACGAAGATTTTCG
ATGATAGCAGTTGACGCTGTTCGGTGGCGGCAGTGGATCATAGGTCATAA
TGGCTTGCTTCTCCTTGGACACGAAGACCGCCAGTGGAACTTTCTCCTTG
TAATCGGAGAGTATGACATGTCGAAGAATGGGCCTTGGTGGTGTTCCACT
ATATCGCAGTGATCGCTTCTCCTTGTACTCATTAACCAGGGGATCCTTAC
TCTCAATGCGATCTAACACTATGTTCACGTTGGATTCCAACCAGGGTAGC
ACCTCGTTCTGACGCCAAACGACTCTTGCACGGCACACATACAGGCACAC
CAGCTGGTGCAGGGCGGGCGATTGATTGCCCGACACATCTGCAAAGAAGT
ACGATGAGGCCAGGACCCTCTTGTCCGTTTGCACCGACATCTCGTCCAAA
AGAGGACGTAAAACACCCGGGGACATTAGTAGGGCGTATTGCAGTGGCTG
GTTAGAGCGTTCACAAGCGCCATAGAGCGTGTGTAGAGCCAAAGCATACG
AGTAGGCCATATTGGGCAGCTGATTGAGGTTCCTCGCGGCGTTATACTTT
TCA

BS05442.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-PA 2109 CG7927-RA 1173..2109 953..17 4635 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-RC 2474 CG7927-RC 1304..2240 953..17 4655 99.8 Minus
CG7927-RA 2388 CG7927-RA 1304..2240 953..17 4655 99.8 Minus
CG7927-RB 2618 CG7927-RB 1304..2080 953..177 3855 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8112112..8112438 725..399 1635 100 Minus
3L 28110227 3L 8111817..8112044 953..726 1110 99.1 Minus
3L 28110227 3L 8112493..8112714 399..178 1110 100 Minus
3L 28110227 3L 8113010..8113172 179..17 815 100 Minus
Blast to na_te.dros performed 2015-02-01 08:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1643..1717 437..364 111 62.7 Minus

BS05442.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:23 Download gff for BS05442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7927-PA 1174..2109 17..952 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:56 Download gff for BS05442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7927-PA 1174..2109 17..952 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:30:34 Download gff for BS05442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1305..2247 10..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:56 Download gff for BS05442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 1305..2247 10..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:56 Download gff for BS05442.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8111818..8112044 726..952 99 -> Minus
3L 8112112..8112438 399..725 100 -> Minus
3L 8112494..8112714 178..398 100 -> Minus
3L 8113012..8113179 10..177 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:30:34 Download gff for BS05442.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8104918..8105144 726..952 99 -> Minus
arm_3L 8105212..8105538 399..725 100 -> Minus
arm_3L 8105594..8105814 178..398 100 -> Minus
arm_3L 8106112..8106279 10..177 98   Minus

BS05442.5prime Sequence

890 bp (814 high quality bases) assembled on 2005-12-02

> BS05442.5prime
GAAGTTATCAGTCGACATGTCTGCGCGAATGCTGAAGAAGCTGCAGGGCG
ACGCTGACAAGCTGGCGCCACCGCCCGATGACGAGGACTGCGAGGAGCTG
AGCGACAATGATGAACTGGAGGACAGCGATATGCAACGCTATCGAAAATC
ACACCTTAATCCATTCGATTTGCTCAATCAAGCCGGTTTGAGTCTCTCGG
AGAGTGAGTTCAAAGAAGATGACAATGAAACGGAGCATCCGTCTGCTGCC
CTGCCCAATGCTACTGCCAGTGCGGCCAAAAAGAAGAAAAAGAAGCGCAA
GAAGAAGGCCAAGTCCAGTGGGAATCACATCAGCAGCGAAGATAACGAGC
GTCAGGATAAGTACTTTGAGAAGGTGGATCCGCTCCTTGGCAAGGTCTAC
GATGCGGTGCCCAGACAGTCGGCGAAACAGTTGGTATCGGCTGCCACCGG
GACTACTGCCACCAAGAAACTGCTGGCCGTAGAGCTACGGCACCTGAATC
CACAGAACGAGATGCGTCGCACTTTTGGCAAGCGGGTGGTAAAAGTGGAA
ACCAAGCGTGGCAGGCAGAAGCCCACGCTGAAGTCCACCTATATGGTGAC
CGCCAAGGATTCGTGGCCGGCACTGACTAAAAACACCATCACGATGAAGC
TGCTGCCCGCCCCAGACTCTCCATCGGTGTCCTCCAAGTCTATCACAGAT
AATGGAGCGGACGTTCAATGGTTTGCCTTTGAGCATAGCCAATACTACCA
GGGAGTGCAGCAAATGTTCCTTTCTGCTCTCGAGCGCATTGACTCGGAAT
TTCTGATCACACTTATCAAACGCTGCCCCTATCATGTCGACTCCTTGGGT
CAACTCAGCGAAAGTATGCAGATGACCGAAGACTTTTTCT

BS05442.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-PA 2109 CG7927-RA 1..846 17..862 4205 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-RC 2474 CG7927-RC 132..1002 17..887 4295 99.7 Plus
CG7927-RB 2618 CG7927-RB 132..1002 17..887 4295 99.7 Plus
CG7927-RA 2388 CG7927-RA 132..1002 17..887 4295 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8110729..8111106 172..549 1890 100 Plus
3L 28110227 3L 8111178..8111515 550..887 1580 99.1 Plus
3L 28110227 3L 8110499..8110654 17..172 780 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:42:03 has no hits.

BS05442.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:25 Download gff for BS05442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7927-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:57 Download gff for BS05442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7927-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:18:15 Download gff for BS05442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 129..1005 10..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:13 Download gff for BS05442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 129..1005 10..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:13 Download gff for BS05442.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8110496..8110654 10..172 97 -> Plus
3L 8110730..8111106 173..549 100 -> Plus
3L 8111178..8111518 550..890 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:18:15 Download gff for BS05442.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8103596..8103754 10..172 97 -> Plus
arm_3L 8103830..8104206 173..549 100 -> Plus
arm_3L 8104278..8104618 550..890 98   Plus

BS05442.complete Sequence

2141 bp assembled on 2008-08-14

GenBank Submission: FJ635114

> BS05442.complete
GAAGTTATCAGTCGACATGTCTGCGCGAATGCTGAAGAAGCTGCAGGGCG
ACGCTGACAAGCTGGCGCCACCGCCCGATGACGAGGACTGCGAGGAGCTG
AGCGACAATGATGAACTGGAGGACAGCGATATGCAACGCTATCGAAAATC
ACACCTTAATCCATTCGATTTGCTCAATCAAGCCGGTTTGAGTCTCTCGG
AGAGTGAGTTCAAAGAAGATGACAATGAAACGGAGCATCCGTCTGCTGCC
CTGCCCAATGCTACTGCCAGTGCGGCCAAAAAGAAGAAAAAGAAGCGCAA
GAAGAAGGCCAAGTCCAGTGGGAATCACATCAGCAGCGAAGATAACGAGC
GTCAGGATAAGTACTTTGAGAAGGTGGATCCGCTCCTTGGCAAGGTCTAC
GATGCGGTGCCCAGACAGTCGGCGAAACAGTTGGTATCGGCTGCCACCGG
GACTACTGCCACCAAGAAACTGCTGGCCGTAGAGCTACGGCACCTGAATC
CACAGAACGAGATGCGTCGCACTTTTGGCAAGCGGGTGGTAAAAGTGGAA
ACCAAGCGTGGCAGGCAGAAGCCCACGCTGAAGTCCACCTATATGGTGAC
CGCCAAGGATTCGTGGCCGGCACTGACTAAAAACACCATCACGATGAAGC
TGCTGCCCGCCCCAGACTCTCCATCGGTGTCCTCCAAGTCTATCACAGAT
AATGGAGCGGACGTTCAATGGTTTGCCTTTGAGCATAGCCAATACTACCA
GGGAGTGCAGCAAATGTTCCTTTCTGCTCTCGAGCGCATTGACTCGGAAT
TTCTGATCACACTTATCAAACGCTGCCCCTATCATGTCGACTCCTTGGTT
CAACTCAGCGAAGTATGCAAGATGACCGAAGACTTTTCCTTGGCCTCCGA
ACTGCTTGAGCGCGCCCTTCTCCTTCTGGAATCGTCGCTGCACATCAACT
TCAGTTTGACGTCGGGCAACTGCCGACTGGACTACCGGAGACAGGAAAAC
CGATCCTTCTACATCGTGCTGTTCAAGCACGCGCAGTACCTGGAGGAACG
AGCTTGCAGCCGCACCGCCTTCGAGATCTCCAAACTGCTCCTGAGTCTTC
AGCCAGACACAGATCCTCTTGCCATGATTCTAGTGATTGACTACTATGCC
TTGCGCAGCAAGCAGTTTGAATGGTTGGTAGAGTTCTATGAAAAGTATAA
CGCCGCGAGGAACCTCAATCAGCTGCCCAATATGGCCTACTCGTATGCTT
TGGCTCTACACACGCTCTATGGCGCTTGTGAACGCTCTAACCAGGCACTG
CAATACGCCCTACTAATGTTCCCGGGTGTTTTACGTCCTCTTTTGGACGA
GATGTCGGTGCAAACGGACAAGAGGGTCCTGGCCTCATCGTACTTCTTTG
CAGATGTGTCGGGCAATCAATCGCCCGCCCTGCACCAGCTGGTGTGCCTG
TATGTGTGCCGTGCAAGAGTCGTTTGGCGTCAGAACGAGGTGCTACCCTG
GTTGGAATCCAACGTGAACATAGTGTTAGATCGCATTGAGAGTAAGGATC
CCCTGGTTAATGAGTACAAGGAGAAGCGATCACTGCGATATAGTGGAACA
CCACCAAGGCCCATTCTTCGACATGTCATACTCTCCGATTACAAGGAGAA
AGTTCCACTGGCGGTCTTCGTGTCCAAGGAGAAGCAAGCCATTATGACCT
ATGATCCACTGCCGCCACCGAACAGCGTCAACTGCTATCATCGAAAATCT
TCGTCAAGCAGCAGCCCCACAACGAACACGAACAATTCTGTGTCAATGTT
CTTTCAATCGCTCTTGCCTTCGTTTAACATTAACAACCTAGCTGCAAATG
CTCAGCTACAAGAAGGAGCAGCACCAGCAGCAGGTGCGGGAGCAGCTGCA
GGCGATGCTAACATTGAAGTGGGCATTGAACAAGGAGCTGCCGGCGTAGC
TGGCGAAGGAGAAGAAGCTGGTTTGCAGCAGTCATTAACGCTAATGATGG
ACGCGATGCGAGACTTCCTGCAAAACTTCCGGATTGCAGAGCACTTGCGT
TCGCCGGAAACGGCGGCGGCACAATCCACGAGCAGCAACGACGAGGAGGA
GGGCTCCAGTGACTACATTGACTAGAAGCTTTCTAGACCAT

BS05442.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-RC 2109 CG7927-PC 1..2109 17..2125 10545 100 Plus
CG7927-RA 2109 CG7927-PA 1..2109 17..2125 10545 100 Plus
CG7927-RB 1962 CG7927-PB 1..1949 17..1965 9745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-RC 2474 CG7927-RC 132..2240 17..2125 10545 100 Plus
CG7927-RA 2388 CG7927-RA 132..2240 17..2125 10545 100 Plus
CG7927-RB 2618 CG7927-RB 132..2080 17..1965 9745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8111178..8112044 550..1416 4335 100 Plus
3L 28110227 3L 8110729..8111106 172..549 1890 100 Plus
3L 28110227 3L 8112112..8112438 1417..1743 1635 100 Plus
3L 28110227 3L 8112493..8112714 1743..1964 1110 100 Plus
3L 28110227 3L 8113010..8113172 1963..2125 815 100 Plus
3L 28110227 3L 8110499..8110654 17..172 780 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:56:14 has no hits.

BS05442.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:49 Download gff for BS05442.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 234..2352 10..2132 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:10 Download gff for BS05442.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 132..2240 17..2125 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:19 Download gff for BS05442.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 237..2345 17..2125 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:21 Download gff for BS05442.complete
Subject Subject Range Query Range Percent Splice Strand
CG7927-RA 132..2240 17..2125 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:21 Download gff for BS05442.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8112494..8112714 1744..1964 100 -> Plus
3L 8113012..8113172 1965..2125 100   Plus
3L 8110499..8110654 17..172 100 -> Plus
3L 8110730..8111106 173..549 100 -> Plus
3L 8111178..8112044 550..1416 100 -> Plus
3L 8112112..8112438 1417..1743 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:10 Download gff for BS05442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8103599..8103754 17..172 100 -> Plus
arm_3L 8103830..8104206 173..549 100 -> Plus
arm_3L 8104278..8105144 550..1416 100 -> Plus
arm_3L 8105212..8105538 1417..1743 100 -> Plus
arm_3L 8105594..8105814 1744..1964 100 -> Plus
arm_3L 8106112..8106272 1965..2125 100   Plus

BS05442.pep Sequence

Translation from 16 to 2124

> BS05442.pep
MSARMLKKLQGDADKLAPPPDDEDCEELSDNDELEDSDMQRYRKSHLNPF
DLLNQAGLSLSESEFKEDDNETEHPSAALPNATASAAKKKKKKRKKKAKS
SGNHISSEDNERQDKYFEKVDPLLGKVYDAVPRQSAKQLVSAATGTTATK
KLLAVELRHLNPQNEMRRTFGKRVVKVETKRGRQKPTLKSTYMVTAKDSW
PALTKNTITMKLLPAPDSPSVSSKSITDNGADVQWFAFEHSQYYQGVQQM
FLSALERIDSEFLITLIKRCPYHVDSLVQLSEVCKMTEDFSLASELLERA
LLLLESSLHINFSLTSGNCRLDYRRQENRSFYIVLFKHAQYLEERACSRT
AFEISKLLLSLQPDTDPLAMILVIDYYALRSKQFEWLVEFYEKYNAARNL
NQLPNMAYSYALALHTLYGACERSNQALQYALLMFPGVLRPLLDEMSVQT
DKRVLASSYFFADVSGNQSPALHQLVCLYVCRARVVWRQNEVLPWLESNV
NIVLDRIESKDPLVNEYKEKRSLRYSGTPPRPILRHVILSDYKEKVPLAV
FVSKEKQAIMTYDPLPPPNSVNCYHRKSSSSSSPTTNTNNSVSMFFQSLL
PSFNINNLAANAQLQEGAAPAAGAGAAAGDANIEVGIEQGAAGVAGEGEE
AGLQQSLTLMMDAMRDFLQNFRIAEHLRSPETAAAQSTSSNDEEEGSSDY
ID*

BS05442.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7927-PC 702 CG7927-PC 1..702 1..702 3588 100 Plus
CG7927-PA 702 CG7927-PA 1..702 1..702 3588 100 Plus
CG7927-PB 653 CG7927-PB 1..650 1..650 3330 100 Plus