Clone Sequence Records
BS05442.3prime Sequence
953 bp (818 high quality bases) assembled on 2005-12-02
> BS05442.3prime
ATGGTCTAGAAAGCTTCTAGTCAATGTAGTCACTGGAGCCCTCCTCCTCG
TCGTTGCTGCTCGTGGATTGTGCCGCCGCCGTTTCCGGCGAACGCAAGTG
CTCTGCAATCCGGAAGTTTTGCAGGAAGTCTCGCATCGCGTCCATCATTA
GCGTTAATGACTGCTGCAAACCAGCTTCTTCTCCTTCGCCAGCTACGCCG
GCAGCTCCTTGTTCAATGCCCACTTCAATGTTAGCATCGCCTGCAGCTGC
TCCCGCACCTGCTGCTGGTGCTGCTCCTTCTTGTAGCTGAGCATTTGCAG
CTAGGTTGTTAATGTTAAACGAAGGCAAGAGCGATTGAAAGAACATTGAC
ACAGAATTGTTCGTGTTCGTTGTGGGGCTGCTGCTTGACGAAGATTTTCG
ATGATAGCAGTTGACGCTGTTCGGTGGCGGCAGTGGATCATAGGTCATAA
TGGCTTGCTTCTCCTTGGACACGAAGACCGCCAGTGGAACTTTCTCCTTG
TAATCGGAGAGTATGACATGTCGAAGAATGGGCCTTGGTGGTGTTCCACT
ATATCGCAGTGATCGCTTCTCCTTGTACTCATTAACCAGGGGATCCTTAC
TCTCAATGCGATCTAACACTATGTTCACGTTGGATTCCAACCAGGGTAGC
ACCTCGTTCTGACGCCAAACGACTCTTGCACGGCACACATACAGGCACAC
CAGCTGGTGCAGGGCGGGCGATTGATTGCCCGACACATCTGCAAAGAAGT
ACGATGAGGCCAGGACCCTCTTGTCCGTTTGCACCGACATCTCGTCCAAA
AGAGGACGTAAAACACCCGGGGACATTAGTAGGGCGTATTGCAGTGGCTG
GTTAGAGCGTTCACAAGCGCCATAGAGCGTGTGTAGAGCCAAAGCATACG
AGTAGGCCATATTGGGCAGCTGATTGAGGTTCCTCGCGGCGTTATACTTT
TCA
BS05442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7927-PA | 2109 | CG7927-RA | 1173..2109 | 953..17 | 4635 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7927-RC | 2474 | CG7927-RC | 1304..2240 | 953..17 | 4655 | 99.8 | Minus |
CG7927-RA | 2388 | CG7927-RA | 1304..2240 | 953..17 | 4655 | 99.8 | Minus |
CG7927-RB | 2618 | CG7927-RB | 1304..2080 | 953..177 | 3855 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8112112..8112438 | 725..399 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 8111817..8112044 | 953..726 | 1110 | 99.1 | Minus |
3L | 28110227 | 3L | 8112493..8112714 | 399..178 | 1110 | 100 | Minus |
3L | 28110227 | 3L | 8113010..8113172 | 179..17 | 815 | 100 | Minus |
Blast to na_te.dros performed 2015-02-01 08:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1643..1717 | 437..364 | 111 | 62.7 | Minus |
BS05442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:23 Download gff for
BS05442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-PA | 1174..2109 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:56 Download gff for
BS05442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-PA | 1174..2109 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:30:34 Download gff for
BS05442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-RA | 1305..2247 | 10..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:56 Download gff for
BS05442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-RA | 1305..2247 | 10..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:56 Download gff for
BS05442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8111818..8112044 | 726..952 | 99 | -> | Minus |
3L | 8112112..8112438 | 399..725 | 100 | -> | Minus |
3L | 8112494..8112714 | 178..398 | 100 | -> | Minus |
3L | 8113012..8113179 | 10..177 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:30:34 Download gff for
BS05442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8104918..8105144 | 726..952 | 99 | -> | Minus |
arm_3L | 8105212..8105538 | 399..725 | 100 | -> | Minus |
arm_3L | 8105594..8105814 | 178..398 | 100 | -> | Minus |
arm_3L | 8106112..8106279 | 10..177 | 98 | | Minus |
BS05442.5prime Sequence
890 bp (814 high quality bases) assembled on 2005-12-02
> BS05442.5prime
GAAGTTATCAGTCGACATGTCTGCGCGAATGCTGAAGAAGCTGCAGGGCG
ACGCTGACAAGCTGGCGCCACCGCCCGATGACGAGGACTGCGAGGAGCTG
AGCGACAATGATGAACTGGAGGACAGCGATATGCAACGCTATCGAAAATC
ACACCTTAATCCATTCGATTTGCTCAATCAAGCCGGTTTGAGTCTCTCGG
AGAGTGAGTTCAAAGAAGATGACAATGAAACGGAGCATCCGTCTGCTGCC
CTGCCCAATGCTACTGCCAGTGCGGCCAAAAAGAAGAAAAAGAAGCGCAA
GAAGAAGGCCAAGTCCAGTGGGAATCACATCAGCAGCGAAGATAACGAGC
GTCAGGATAAGTACTTTGAGAAGGTGGATCCGCTCCTTGGCAAGGTCTAC
GATGCGGTGCCCAGACAGTCGGCGAAACAGTTGGTATCGGCTGCCACCGG
GACTACTGCCACCAAGAAACTGCTGGCCGTAGAGCTACGGCACCTGAATC
CACAGAACGAGATGCGTCGCACTTTTGGCAAGCGGGTGGTAAAAGTGGAA
ACCAAGCGTGGCAGGCAGAAGCCCACGCTGAAGTCCACCTATATGGTGAC
CGCCAAGGATTCGTGGCCGGCACTGACTAAAAACACCATCACGATGAAGC
TGCTGCCCGCCCCAGACTCTCCATCGGTGTCCTCCAAGTCTATCACAGAT
AATGGAGCGGACGTTCAATGGTTTGCCTTTGAGCATAGCCAATACTACCA
GGGAGTGCAGCAAATGTTCCTTTCTGCTCTCGAGCGCATTGACTCGGAAT
TTCTGATCACACTTATCAAACGCTGCCCCTATCATGTCGACTCCTTGGGT
CAACTCAGCGAAAGTATGCAGATGACCGAAGACTTTTTCT
BS05442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7927-PA | 2109 | CG7927-RA | 1..846 | 17..862 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7927-RC | 2474 | CG7927-RC | 132..1002 | 17..887 | 4295 | 99.7 | Plus |
CG7927-RB | 2618 | CG7927-RB | 132..1002 | 17..887 | 4295 | 99.7 | Plus |
CG7927-RA | 2388 | CG7927-RA | 132..1002 | 17..887 | 4295 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8110729..8111106 | 172..549 | 1890 | 100 | Plus |
3L | 28110227 | 3L | 8111178..8111515 | 550..887 | 1580 | 99.1 | Plus |
3L | 28110227 | 3L | 8110499..8110654 | 17..172 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:42:03 has no hits.
BS05442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:25 Download gff for
BS05442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:57 Download gff for
BS05442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:18:15 Download gff for
BS05442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-RA | 129..1005 | 10..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:13 Download gff for
BS05442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-RA | 129..1005 | 10..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:13 Download gff for
BS05442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8110496..8110654 | 10..172 | 97 | -> | Plus |
3L | 8110730..8111106 | 173..549 | 100 | -> | Plus |
3L | 8111178..8111518 | 550..890 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:18:15 Download gff for
BS05442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8103596..8103754 | 10..172 | 97 | -> | Plus |
arm_3L | 8103830..8104206 | 173..549 | 100 | -> | Plus |
arm_3L | 8104278..8104618 | 550..890 | 98 | | Plus |
BS05442.complete Sequence
2141 bp assembled on 2008-08-14
GenBank Submission: FJ635114
> BS05442.complete
GAAGTTATCAGTCGACATGTCTGCGCGAATGCTGAAGAAGCTGCAGGGCG
ACGCTGACAAGCTGGCGCCACCGCCCGATGACGAGGACTGCGAGGAGCTG
AGCGACAATGATGAACTGGAGGACAGCGATATGCAACGCTATCGAAAATC
ACACCTTAATCCATTCGATTTGCTCAATCAAGCCGGTTTGAGTCTCTCGG
AGAGTGAGTTCAAAGAAGATGACAATGAAACGGAGCATCCGTCTGCTGCC
CTGCCCAATGCTACTGCCAGTGCGGCCAAAAAGAAGAAAAAGAAGCGCAA
GAAGAAGGCCAAGTCCAGTGGGAATCACATCAGCAGCGAAGATAACGAGC
GTCAGGATAAGTACTTTGAGAAGGTGGATCCGCTCCTTGGCAAGGTCTAC
GATGCGGTGCCCAGACAGTCGGCGAAACAGTTGGTATCGGCTGCCACCGG
GACTACTGCCACCAAGAAACTGCTGGCCGTAGAGCTACGGCACCTGAATC
CACAGAACGAGATGCGTCGCACTTTTGGCAAGCGGGTGGTAAAAGTGGAA
ACCAAGCGTGGCAGGCAGAAGCCCACGCTGAAGTCCACCTATATGGTGAC
CGCCAAGGATTCGTGGCCGGCACTGACTAAAAACACCATCACGATGAAGC
TGCTGCCCGCCCCAGACTCTCCATCGGTGTCCTCCAAGTCTATCACAGAT
AATGGAGCGGACGTTCAATGGTTTGCCTTTGAGCATAGCCAATACTACCA
GGGAGTGCAGCAAATGTTCCTTTCTGCTCTCGAGCGCATTGACTCGGAAT
TTCTGATCACACTTATCAAACGCTGCCCCTATCATGTCGACTCCTTGGTT
CAACTCAGCGAAGTATGCAAGATGACCGAAGACTTTTCCTTGGCCTCCGA
ACTGCTTGAGCGCGCCCTTCTCCTTCTGGAATCGTCGCTGCACATCAACT
TCAGTTTGACGTCGGGCAACTGCCGACTGGACTACCGGAGACAGGAAAAC
CGATCCTTCTACATCGTGCTGTTCAAGCACGCGCAGTACCTGGAGGAACG
AGCTTGCAGCCGCACCGCCTTCGAGATCTCCAAACTGCTCCTGAGTCTTC
AGCCAGACACAGATCCTCTTGCCATGATTCTAGTGATTGACTACTATGCC
TTGCGCAGCAAGCAGTTTGAATGGTTGGTAGAGTTCTATGAAAAGTATAA
CGCCGCGAGGAACCTCAATCAGCTGCCCAATATGGCCTACTCGTATGCTT
TGGCTCTACACACGCTCTATGGCGCTTGTGAACGCTCTAACCAGGCACTG
CAATACGCCCTACTAATGTTCCCGGGTGTTTTACGTCCTCTTTTGGACGA
GATGTCGGTGCAAACGGACAAGAGGGTCCTGGCCTCATCGTACTTCTTTG
CAGATGTGTCGGGCAATCAATCGCCCGCCCTGCACCAGCTGGTGTGCCTG
TATGTGTGCCGTGCAAGAGTCGTTTGGCGTCAGAACGAGGTGCTACCCTG
GTTGGAATCCAACGTGAACATAGTGTTAGATCGCATTGAGAGTAAGGATC
CCCTGGTTAATGAGTACAAGGAGAAGCGATCACTGCGATATAGTGGAACA
CCACCAAGGCCCATTCTTCGACATGTCATACTCTCCGATTACAAGGAGAA
AGTTCCACTGGCGGTCTTCGTGTCCAAGGAGAAGCAAGCCATTATGACCT
ATGATCCACTGCCGCCACCGAACAGCGTCAACTGCTATCATCGAAAATCT
TCGTCAAGCAGCAGCCCCACAACGAACACGAACAATTCTGTGTCAATGTT
CTTTCAATCGCTCTTGCCTTCGTTTAACATTAACAACCTAGCTGCAAATG
CTCAGCTACAAGAAGGAGCAGCACCAGCAGCAGGTGCGGGAGCAGCTGCA
GGCGATGCTAACATTGAAGTGGGCATTGAACAAGGAGCTGCCGGCGTAGC
TGGCGAAGGAGAAGAAGCTGGTTTGCAGCAGTCATTAACGCTAATGATGG
ACGCGATGCGAGACTTCCTGCAAAACTTCCGGATTGCAGAGCACTTGCGT
TCGCCGGAAACGGCGGCGGCACAATCCACGAGCAGCAACGACGAGGAGGA
GGGCTCCAGTGACTACATTGACTAGAAGCTTTCTAGACCAT
BS05442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7927-RC | 2109 | CG7927-PC | 1..2109 | 17..2125 | 10545 | 100 | Plus |
CG7927-RA | 2109 | CG7927-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
CG7927-RB | 1962 | CG7927-PB | 1..1949 | 17..1965 | 9745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7927-RC | 2474 | CG7927-RC | 132..2240 | 17..2125 | 10545 | 100 | Plus |
CG7927-RA | 2388 | CG7927-RA | 132..2240 | 17..2125 | 10545 | 100 | Plus |
CG7927-RB | 2618 | CG7927-RB | 132..2080 | 17..1965 | 9745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8111178..8112044 | 550..1416 | 4335 | 100 | Plus |
3L | 28110227 | 3L | 8110729..8111106 | 172..549 | 1890 | 100 | Plus |
3L | 28110227 | 3L | 8112112..8112438 | 1417..1743 | 1635 | 100 | Plus |
3L | 28110227 | 3L | 8112493..8112714 | 1743..1964 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 8113010..8113172 | 1963..2125 | 815 | 100 | Plus |
3L | 28110227 | 3L | 8110499..8110654 | 17..172 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:56:14 has no hits.
BS05442.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:49 Download gff for
BS05442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-RA | 234..2352 | 10..2132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:10 Download gff for
BS05442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-RA | 132..2240 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:19 Download gff for
BS05442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-RA | 237..2345 | 17..2125 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:21 Download gff for
BS05442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7927-RA | 132..2240 | 17..2125 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:21 Download gff for
BS05442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8112494..8112714 | 1744..1964 | 100 | -> | Plus |
3L | 8113012..8113172 | 1965..2125 | 100 | | Plus |
3L | 8110499..8110654 | 17..172 | 100 | -> | Plus |
3L | 8110730..8111106 | 173..549 | 100 | -> | Plus |
3L | 8111178..8112044 | 550..1416 | 100 | -> | Plus |
3L | 8112112..8112438 | 1417..1743 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:10 Download gff for
BS05442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8103599..8103754 | 17..172 | 100 | -> | Plus |
arm_3L | 8103830..8104206 | 173..549 | 100 | -> | Plus |
arm_3L | 8104278..8105144 | 550..1416 | 100 | -> | Plus |
arm_3L | 8105212..8105538 | 1417..1743 | 100 | -> | Plus |
arm_3L | 8105594..8105814 | 1744..1964 | 100 | -> | Plus |
arm_3L | 8106112..8106272 | 1965..2125 | 100 | | Plus |
BS05442.pep Sequence
Translation from 16 to 2124
> BS05442.pep
MSARMLKKLQGDADKLAPPPDDEDCEELSDNDELEDSDMQRYRKSHLNPF
DLLNQAGLSLSESEFKEDDNETEHPSAALPNATASAAKKKKKKRKKKAKS
SGNHISSEDNERQDKYFEKVDPLLGKVYDAVPRQSAKQLVSAATGTTATK
KLLAVELRHLNPQNEMRRTFGKRVVKVETKRGRQKPTLKSTYMVTAKDSW
PALTKNTITMKLLPAPDSPSVSSKSITDNGADVQWFAFEHSQYYQGVQQM
FLSALERIDSEFLITLIKRCPYHVDSLVQLSEVCKMTEDFSLASELLERA
LLLLESSLHINFSLTSGNCRLDYRRQENRSFYIVLFKHAQYLEERACSRT
AFEISKLLLSLQPDTDPLAMILVIDYYALRSKQFEWLVEFYEKYNAARNL
NQLPNMAYSYALALHTLYGACERSNQALQYALLMFPGVLRPLLDEMSVQT
DKRVLASSYFFADVSGNQSPALHQLVCLYVCRARVVWRQNEVLPWLESNV
NIVLDRIESKDPLVNEYKEKRSLRYSGTPPRPILRHVILSDYKEKVPLAV
FVSKEKQAIMTYDPLPPPNSVNCYHRKSSSSSSPTTNTNNSVSMFFQSLL
PSFNINNLAANAQLQEGAAPAAGAGAAAGDANIEVGIEQGAAGVAGEGEE
AGLQQSLTLMMDAMRDFLQNFRIAEHLRSPETAAAQSTSSNDEEEGSSDY
ID*
BS05442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7927-PC | 702 | CG7927-PC | 1..702 | 1..702 | 3588 | 100 | Plus |
CG7927-PA | 702 | CG7927-PA | 1..702 | 1..702 | 3588 | 100 | Plus |
CG7927-PB | 653 | CG7927-PB | 1..650 | 1..650 | 3330 | 100 | Plus |