Clone Sequence Records
BS05443.3prime Sequence
927 bp (816 high quality bases) assembled on 2005-12-02
> BS05443.3prime
ATGGTCTAGAAAGCTTTCAGGCCGTTCCGCCGCGCACCACCACAATCACC
AGGTGATCCTCCTTCAGGCCCTCCTCCGTCAGACTGTGACAAGTGCGCTT
TAGCAGCTCTGTGGAAAAGTCGCAGGGGGGGAAGGCGTACAGCACCCCAG
TTGCCTCCGTCTCCTTGTTAAGCAGCGAGATCACGCCAGCCGCCTCCTTC
TGCTTAAGATAGGAAACCAAGTTTCTTAGTGGTCGCGTCTGCACGCTGGC
ATCGTCGCAATTGGTGTCGTTTGTGGACCCTGCCAGACCCATGAAAATGG
CGTGCGACGATGAGGATGCAATACGTTTTTGCACGTCGTCCAGCTTGGGC
GGATCCAGACGCAGTCGCTGGGTGATACGTAGGTTGTGCTTGCCCTCCTC
ATCGCGCATCAGCGACTCCACAATATCCGTATCTCCGTCCGTCAAATGAA
ACTTGGCTGGGAACAGTGAGCTCTTGAGGATTAGCGCTCCGGTCCACACT
GTGCTGCACTTGCGCGCCACATCTGGAACCGTACTGGCTGATGCAAGGGC
GTCGTTCCGACGAGTCGAGGTGTCAGAATCAGATCCGGGAGAGCGAGCCC
GCTTCAATGGGGATCTAGAACGAGAGCGTTCTACACCAGGTTCCCGAGAG
CTGGAGCGGGCTCCTCTGTCGTACGATTCTCCTGGCGGGCGTCGCCACTC
ATCCTCCACTCCGCCGGGAGGGGGAACTGAAGAAGAGGAACCTGCTAAGG
AGCCAGGATGCGGCGGCCTATGCACGTCGTTGTGATAATGGTACATGCCT
CTTCCTCTTCCGCGATATCCCCCACGTCCACGGTAGCCACCCCTAGGTGG
ATACGGAGAATAGCCACCGCGCGGAGCGTAGGCGGCGGACTCTTCGTAAT
ACGGATCGTATTCCGGACGTCTGTACT
BS05443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2910-PB | 2382 | nito-RB | 1472..2382 | 927..17 | 4555 | 100 | Minus |
| CG2910-PA | 2382 | nito-RA | 1472..2382 | 927..17 | 4555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nito-RC | 3084 | CG2910-RC | 1687..2597 | 927..17 | 4555 | 100 | Minus |
| nito-RA | 4001 | CG2910-RA | 1687..2597 | 927..17 | 4555 | 100 | Minus |
| nito-RB | 3115 | CG2910-RB | 1687..2597 | 927..17 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7964372..7965282 | 927..17 | 4555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:20:56 has no hits.
BS05443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:26 Download gff for
BS05443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-PB | 1472..2382 | 17..927 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:39:58 Download gff for
BS05443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2910-PA | 1472..2382 | 17..927 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:48:06 Download gff for
BS05443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-RB | 1687..2600 | 12..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:54 Download gff for
BS05443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-RB | 1687..2600 | 12..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:54 Download gff for
BS05443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7964372..7965285 | 12..927 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:48:06 Download gff for
BS05443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3851877..3852790 | 12..927 | 99 | | Minus |
BS05443.5prime Sequence
579 bp (578 high quality bases) assembled on 2005-12-02
> BS05443.5prime
GAAGTTATCAGTCGCCATGAGTAGTCATCGAGACGGAGCCGGAGCCGATC
GTATCACAATCAAAATTCACAACATGAAGCGTAGCGCCTCGCGCTCCCCG
GGCCCGGCCTCCAGGAGCAGTTTGTCGCGCAACTCGCGAAGCATGGGTCG
TGGGTACGACAACGGCAGCGGCGTGCCTGGCGATTCGCCGGAGCGCCTGT
CGCCGGAGCGCATGCGACGTCGATTGGACCGCTCGCCGAGTCGTTATGGC
TCCCCGCACCGGGAGCCCTACATGCGTGGTCCACCGCCTGCAGAGCGACC
AGCTGGCTACAAGGTACTTTGCGTCAGTGCCCTGCCGCCAAAGGCTCCGG
ACGATTTTATCGAGGAGACACTGTACCGCGAGTACAAGAAGTTTGGCGAT
TTTAGCGTGCGACTGGCGCACGACTTGGATGAACGGGTTGCTTACGTTTG
CTTCCGAACGCCTGAAGATGCACGCGAGGCGAAGCACCATAAGCCGCGCC
TGATCATCTACGACAAGATGGCCATTGTGGAGCCGGTGTACAAGTCCACA
ACCAGACCGGAATATAGACCACGCGGTCA
BS05443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2910-PB | 2382 | nito-RB | 1..563 | 17..579 | 2815 | 100 | Plus |
| CG2910-PA | 2382 | nito-RA | 1..563 | 17..579 | 2815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nito-RC | 3084 | CG2910-RC | 214..778 | 15..579 | 2825 | 100 | Plus |
| nito-RA | 4001 | CG2910-RA | 214..778 | 15..579 | 2825 | 100 | Plus |
| nito-RB | 3115 | CG2910-RB | 214..778 | 15..579 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7962841..7963393 | 15..567 | 2765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:43:38 has no hits.
BS05443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:27 Download gff for
BS05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-PB | 1..562 | 17..578 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:00 Download gff for
BS05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2910-PA | 1..562 | 17..578 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:14 Download gff for
BS05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-RB | 206..777 | 7..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:27 Download gff for
BS05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-RB | 206..777 | 7..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:27 Download gff for
BS05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7962833..7963393 | 7..567 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:14 Download gff for
BS05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3850338..3850898 | 7..567 | 99 | | Plus |
BS05443.complete Sequence
2414 bp assembled on 2008-08-14
GenBank Submission: FJ635115
> BS05443.complete
GAAGTTATCAGTCGCCATGAGTAGTCATCGAGACGGAGCCGGAGCCGATC
GTATCACAATCAAAATTCACAACATGAAGCGTAGCGCCTCGCGCTCCCCG
GGCCCGGCCTCCAGGAGCAGTTTGTCGCGCAACTCGCGAAGCATGGGTCG
TGGGTACGACAACGGCAGCGGCGTGCCTGGCGATTCGCCGGAGCGCCTGT
CGCCGGAGCGCATGCGACGTCGATTGGACCGCTCGCCGAGTCGTTATGGC
TCCCCGCACCGGGAGCCCTACATGCGTGGTCCACCGCCTGCAGAGCGACC
AGCTGGCTACAAGGTACTTTGCGTCAGTGCCCTGCCGCCAAAGGCTCCGG
ACGATTTTATCGAGGAGACACTGTACCGCGAGTACAAGAAGTTTGGCGAT
TTTAGCGTGCGACTGGCGCACGACTTGGATGAACGGGTTGCTTACGTTTG
CTTCCGAACGCCTGAAGATGCACGCGAGGCGAAGCACCATAAGCCGCGCC
TGATCATCTACGACAAGATGGCCATTGTGGAGCCGGTGTACAAGTCCACA
ACCAGACCGGAATATAGACCACGCGGTCACTCAATGTCCCCACCGGACTA
TGAACGTTACCACTACTCGAGGTCCCCTATGGGACAAGGCGTTCCTTTGG
ATCACCGTCGACCTCCGATTGATCCCTACGATCGGTACGGTCCTCCCCAT
ATGCATCCGCACGCAGTCCATCCACGTGATTACCGCCCATTGCATCATGA
CTATCCTCATCCGCCACGCGGACCACCTTTGCATCGCGGCGGCCATCCGC
ATCACCTCCATGGCCATGCGCCGCCCCATCAGTATGCTCCAATGAGGCCA
TTGGCACCACGCCCACACGCTCCCTATGAAAAGCCTGAGAGCAAGAAGGA
CAAGTTCCCCAATTACTTGCACCATGTGCAGCCCGAGGATGATCCTCTTT
CTACGCGCACACTGTTTGCAGGAAATCTGGAGGTTACCATCGCCGACGAC
GAACTGCGTCGCATCTTTGGCAAATACGGAGTGGTAGATGACATCGACAT
CAAGCGACCGCCGCCGGGTACGGGGAACGCGTTCGCGTTTGTACGTTACC
AAAACCTGGATATGGCTCACCGAGCGAAGATCGAATTGTCTGGACAGTAC
ATTGGCAAGTTTCAGTGCAAGATCGGATACGGGAAAGTGACTCCGGCAAC
TCGTATGTGGATCGGAGGCTTAGGTGCCTGGACTTCTGTCACTCAGCTGG
AGCGAGAGTTTGATCGCTTCGGTGCGATCAAGAAGATTGAATACCAGAAG
GGCGAGCCGTACGCTTATATTCAGTACGAGACAGTGGAGGCAGCCACGGC
GGCGGTAAAGGAGATGCGAGGATTCCCATTGGGTGGACCGGAGCGTCGAC
TCCGCACGGACTTTGCCGAGTTGCCCGGCGCCACACCGGCAGCGCCTTTC
AAGAGCTCAAAGCCGCCATATGATGAAAGTGCGTTGGAGTACAGACGTCC
GGAATACGATCCGTATTACGAAGAGTCCGCCGCCTACGCTCCGCGCGGTG
GCTATTCTCCGTATCCACCTAGGGGTGGCTACCGTGGACGTGGGGGATAT
CGCGGAAGAGGAAGAGGCATGTACCATTATCACAACGACGTGCATAGGCC
GCCGCATCCTGGCTCCTTAGCAGGTTCCTCTTCTTCAGTTCCCCCTCCCG
GCGGAGTGGAGGATGAGTGGCGACGCCCGCCAGGAGAATCGTACGACAGA
GGAGCCCGCTCCAGCTCTCGGGAACCTGGTGTAGAACGCTCTCGTTCTAG
ATCCCCATTGAAGCGGGCTCGCTCTCCCGGATCTGATTCTGACACCTCGA
CTCGTCGGAACGACGCCCTTGCATCAGCCAGTACGGTTCCAGATGTGGCG
CGCAAGTGCAGCACAGTGTGGACCGGAGCGCTAATCCTCAAGAGCTCACT
GTTCCCAGCCAAGTTTCATTTGACGGACGGAGATACGGATATTGTGGAGT
CGCTGATGCGCGATGAGGAGGGCAAGCACAACCTACGTATCACCCAGCGA
CTGCGTCTGGATCCGCCCAAGCTGGACGACGTGCAAAAACGTATTGCATC
CTCATCGTCGCACGCCATTTTCATGGGTCTGGCAGGGTCCACAAACGACA
CCAATTGCGACGATGCCAGCGTGCAGACGCGACCACTAAGAAACTTGGTT
TCCTATCTTAAGCAGAAGGAGGCGGCTGGCGTGATCTCGCTGCTTAACAA
GGAGACGGAGGCAACTGGGGTGCTGTACGCCTTCCCCCCCTGCGACTTTT
CCACAGAGCTGCTAAAGCGCACTTGTCACAGTCTGACGGAGGAGGGCCTG
AAGGAGGATCACCTGGTGATTGTGGTGGTGCGCGGCGGAACGGCCTGAAA
GCTTTCTAGACCAT
BS05443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nito-RC | 2382 | CG2910-PC | 1..2382 | 17..2398 | 11910 | 100 | Plus |
| nito-RA | 2382 | CG2910-PA | 1..2382 | 17..2398 | 11910 | 100 | Plus |
| nito-RB | 2382 | CG2910-PB | 1..2382 | 17..2398 | 11910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nito-RC | 3084 | CG2910-RC | 214..2597 | 15..2398 | 11920 | 100 | Plus |
| nito-RA | 4001 | CG2910-RA | 214..2597 | 15..2398 | 11920 | 100 | Plus |
| nito-RB | 3115 | CG2910-RB | 214..2597 | 15..2398 | 11920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7963450..7965282 | 566..2398 | 9165 | 100 | Plus |
| 2R | 25286936 | 2R | 7962841..7963393 | 15..567 | 2765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:54:09 has no hits.
BS05443.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:18 Download gff for
BS05443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-RA | 183..2577 | 7..2403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:02 Download gff for
BS05443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-RB | 216..2596 | 17..2397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:39 Download gff for
BS05443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-RA | 193..2573 | 17..2397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:33 Download gff for
BS05443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nito-RB | 216..2596 | 17..2397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:33 Download gff for
BS05443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7962843..7963393 | 17..567 | 100 | -> | Plus |
| 2R | 7963452..7965281 | 568..2397 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:02 Download gff for
BS05443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3850348..3850898 | 17..567 | 100 | -> | Plus |
| arm_2R | 3850957..3852786 | 568..2397 | 100 | | Plus |
BS05443.pep Sequence
Translation from 16 to 2397
> BS05443.pep
MSSHRDGAGADRITIKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNG
SGVPGDSPERLSPERMRRRLDRSPSRYGSPHREPYMRGPPPAERPAGYKV
LCVSALPPKAPDDFIEETLYREYKKFGDFSVRLAHDLDERVAYVCFRTPE
DAREAKHHKPRLIIYDKMAIVEPVYKSTTRPEYRPRGHSMSPPDYERYHY
SRSPMGQGVPLDHRRPPIDPYDRYGPPHMHPHAVHPRDYRPLHHDYPHPP
RGPPLHRGGHPHHLHGHAPPHQYAPMRPLAPRPHAPYEKPESKKDKFPNY
LHHVQPEDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPP
GTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIG
GLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAATAAVKEM
RGFPLGGPERRLRTDFAELPGATPAAPFKSSKPPYDESALEYRRPEYDPY
YEESAAYAPRGGYSPYPPRGGYRGRGGYRGRGRGMYHYHNDVHRPPHPGS
LAGSSSSVPPPGGVEDEWRRPPGESYDRGARSSSREPGVERSRSRSPLKR
ARSPGSDSDTSTRRNDALASASTVPDVARKCSTVWTGALILKSSLFPAKF
HLTDGDTDIVESLMRDEEGKHNLRITQRLRLDPPKLDDVQKRIASSSSHA
IFMGLAGSTNDTNCDDASVQTRPLRNLVSYLKQKEAAGVISLLNKETEAT
GVLYAFPPCDFSTELLKRTCHSLTEEGLKEDHLVIVVVRGGTA*
BS05443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nito-PC | 793 | CG2910-PC | 1..793 | 1..793 | 4295 | 100 | Plus |
| nito-PA | 793 | CG2910-PA | 1..793 | 1..793 | 4295 | 100 | Plus |
| nito-PB | 793 | CG2910-PB | 1..793 | 1..793 | 4295 | 100 | Plus |
| spen-PH | 5458 | CG18497-PH | 572..747 | 286..467 | 278 | 36.3 | Plus |
| spen-PC | 5476 | CG18497-PC | 572..747 | 286..467 | 278 | 36.3 | Plus |
| spen-PH | 5458 | CG18497-PH | 5271..5455 | 588..787 | 175 | 26 | Plus |
