Clone BS05444 Report

Search the DGRC for BS05444

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG1927-RA
Protein status:BS05444.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05444.5prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-02

> BS05444.5prime
GAAGTTATCAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTG
AGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTC
GATGAGGAGACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTT
CCGCAAACACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCA
TATGCGATGAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCA
GCCACCGCGATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGA
ACGCGAGGACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGG
GCTACAACCGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGC
TACAACTTCGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCA
CATGATGTCCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACT
TCCGTAGTCCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGC
ACGGAAACCGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCA
GATGCGCAACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAA
TTGGATAAAAGCTTTCTAGACC

BS05444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-PA 642 CG1927-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-RA 1198 CG1927-RA 462..1104 16..658 3215 100 Plus
CG1927-RB 744 CG1927-RB 26..650 34..658 3125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1966819..1967139 658..338 1605 100 Minus
3L 28110227 3L 1967200..1967504 337..33 1525 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:51:59 has no hits.

BS05444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:29 Download gff for BS05444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:03 Download gff for BS05444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:23:12 Download gff for BS05444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 455..1107 9..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:47:52 Download gff for BS05444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 455..1107 9..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:47:52 Download gff for BS05444.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1966816..1967139 338..663 99 <- Minus
3L 1967200..1967502 35..337 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:23:12 Download gff for BS05444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1966816..1967139 338..663 99 <- Minus
arm_3L 1967200..1967502 35..337 100 <- Minus

BS05444.3prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-02

> BS05444.3prime
ATGGTCTAGAAAGCTTTTATCCAATTGCCTTGGCCATGTCCTTCAGCGCC
TCGGAGCGATGTGCGTTGCGCATCTGCTTGTTAAGGATATCGAAGATGCG
GTTGTACTTGCTGTCGGTTTCCGTGCGGCAGATGGCGCAGAACTGCGAGG
ACAGCACGTTGAGTGGACTACGGAAGTACAGGCTCTTCTGCATGGTGAGA
CCGTTCCTGTGGTGGGACATCATGTGCAGGACGATCTCGATGAGGGCCAG
CGTGGCTCCAATGACGAAGTTGTAGCAGAAGAGCGTGGGCACCAGGAACA
GCAAGTAGGGGTTGCGGTTGTAGCCCAGGATTATGTTGTTGCTCACGCCA
TCCATTTGACAATAGTCCTCGCGTTCGTAGCCCGGAGTGACCTTTTTGGG
TGCCCTGTTGGGAATCGCGGTGGCTGCCCCATATCTCACCGTATTGGCCA
GCTCGTCGTCTACCTCATCGCATATGGTTCCGCGGAGATAGTGCTTGGGT
ACATGGAAATTCGTGTGTTTGCGGAAGTGAACCTTGGTCACCTGGTCGTG
GATCGGTTCACCGGTCTCCTCATCGAAGGCCGGTCTATTAACGCGGACGG
TGTCTGTGTAGAAGTACTCCAACTCACCCGTTTCGCAGTTCTTAATGGAA
TAACCCATGTCGACTGATAACT

BS05444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-PA 642 CG1927-RA 1..642 658..17 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-RA 1198 CG1927-RA 462..1104 659..17 3215 100 Minus
CG1927-RB 744 CG1927-RB 26..650 641..17 3125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1966819..1967139 17..337 1605 100 Plus
3L 28110227 3L 1967200..1967504 338..642 1525 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:06:20 has no hits.

BS05444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:28 Download gff for BS05444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:01 Download gff for BS05444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:49:33 Download gff for BS05444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 455..1107 12..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:56:47 Download gff for BS05444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 455..1107 12..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:56:47 Download gff for BS05444.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1966816..1967139 12..337 99 <- Plus
3L 1967200..1967502 338..640 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:49:33 Download gff for BS05444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1966816..1967139 12..337 99 <- Plus
arm_3L 1967200..1967502 338..640 100 <- Plus

BS05444.complete Sequence

674 bp (674 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635116

> BS05444.complete
GAAGTTATCAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTG
AGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTC
GATGAGGAGACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTT
CCGCAAACACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCA
TATGCGATGAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCA
GCCACCGCGATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGA
ACGCGAGGACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGG
GCTACAACCGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGC
TACAACTTCGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCA
CATGATGTCCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACT
TCCGTAGTCCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGC
ACGGAAACCGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCA
GATGCGCAACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAA
TTGGATAAAAGCTTTCTAGACCAT

BS05444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-RA 642 CG1927-PA 1..642 17..658 3210 100 Plus
CG1927-RB 633 CG1927-PB 9..633 34..658 3125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-RA 1198 CG1927-RA 462..1104 16..658 3215 100 Plus
CG1927-RB 744 CG1927-RB 26..650 34..658 3125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1966819..1967139 658..338 1605 100 Minus
3L 28110227 3L 1967200..1967504 337..33 1525 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:38:10 has no hits.

BS05444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:39 Download gff for BS05444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:47 Download gff for BS05444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 451..1103 9..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:02 Download gff for BS05444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 463..1102 17..656 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:39 Download gff for BS05444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 451..1103 9..663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:11 Download gff for BS05444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 463..1102 17..656 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:11 Download gff for BS05444.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1966821..1967139 338..656 100 <- Minus
3L 1967200..1967502 35..337 100 <- Minus
3L 1969600..1969617 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:02 Download gff for BS05444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1967200..1967502 35..337 100 <- Minus
arm_3L 1969600..1969617 17..34 100   Minus
arm_3L 1966821..1967139 338..656 100 <- Minus

BS05444.pep Sequence

Translation from 16 to 657

> BS05444.pep
MGYSIKNCETGELEYFYTDTVRVNRPAFDEETGEPIHDQVTKVHFRKHTN
FHVPKHYLRGTICDEVDDELANTVRYGAATAIPNRAPKKVTPGYEREDYC
QMDGVSNNIILGYNRNPYLLFLVPTLFCYNFVIGATLALIEIVLHMMSHH
RNGLTMQKSLYFRSPLNVLSSQFCAICRTETDSKYNRIFDILNKQMRNAH
RSEALKDMAKAIG*

BS05444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-PA 213 CG1927-PA 1..213 1..213 1140 100 Plus
CG1927-PB 210 CG1927-PB 4..210 7..213 1109 100 Plus