Clone Sequence Records
BS05444.5prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-02
> BS05444.5prime
GAAGTTATCAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTG
AGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTC
GATGAGGAGACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTT
CCGCAAACACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCA
TATGCGATGAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCA
GCCACCGCGATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGA
ACGCGAGGACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGG
GCTACAACCGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGC
TACAACTTCGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCA
CATGATGTCCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACT
TCCGTAGTCCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGC
ACGGAAACCGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCA
GATGCGCAACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAA
TTGGATAAAAGCTTTCTAGACC
BS05444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-PA | 642 | CG1927-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-RA | 1198 | CG1927-RA | 462..1104 | 16..658 | 3215 | 100 | Plus |
CG1927-RB | 744 | CG1927-RB | 26..650 | 34..658 | 3125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1966819..1967139 | 658..338 | 1605 | 100 | Minus |
3L | 28110227 | 3L | 1967200..1967504 | 337..33 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:51:59 has no hits.
BS05444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:29 Download gff for
BS05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:03 Download gff for
BS05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:23:12 Download gff for
BS05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 455..1107 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:47:52 Download gff for
BS05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 455..1107 | 9..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:47:52 Download gff for
BS05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1966816..1967139 | 338..663 | 99 | <- | Minus |
3L | 1967200..1967502 | 35..337 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:23:12 Download gff for
BS05444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1966816..1967139 | 338..663 | 99 | <- | Minus |
arm_3L | 1967200..1967502 | 35..337 | 100 | <- | Minus |
BS05444.3prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-02
> BS05444.3prime
ATGGTCTAGAAAGCTTTTATCCAATTGCCTTGGCCATGTCCTTCAGCGCC
TCGGAGCGATGTGCGTTGCGCATCTGCTTGTTAAGGATATCGAAGATGCG
GTTGTACTTGCTGTCGGTTTCCGTGCGGCAGATGGCGCAGAACTGCGAGG
ACAGCACGTTGAGTGGACTACGGAAGTACAGGCTCTTCTGCATGGTGAGA
CCGTTCCTGTGGTGGGACATCATGTGCAGGACGATCTCGATGAGGGCCAG
CGTGGCTCCAATGACGAAGTTGTAGCAGAAGAGCGTGGGCACCAGGAACA
GCAAGTAGGGGTTGCGGTTGTAGCCCAGGATTATGTTGTTGCTCACGCCA
TCCATTTGACAATAGTCCTCGCGTTCGTAGCCCGGAGTGACCTTTTTGGG
TGCCCTGTTGGGAATCGCGGTGGCTGCCCCATATCTCACCGTATTGGCCA
GCTCGTCGTCTACCTCATCGCATATGGTTCCGCGGAGATAGTGCTTGGGT
ACATGGAAATTCGTGTGTTTGCGGAAGTGAACCTTGGTCACCTGGTCGTG
GATCGGTTCACCGGTCTCCTCATCGAAGGCCGGTCTATTAACGCGGACGG
TGTCTGTGTAGAAGTACTCCAACTCACCCGTTTCGCAGTTCTTAATGGAA
TAACCCATGTCGACTGATAACT
BS05444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-PA | 642 | CG1927-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-RA | 1198 | CG1927-RA | 462..1104 | 659..17 | 3215 | 100 | Minus |
CG1927-RB | 744 | CG1927-RB | 26..650 | 641..17 | 3125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1966819..1967139 | 17..337 | 1605 | 100 | Plus |
3L | 28110227 | 3L | 1967200..1967504 | 338..642 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:06:20 has no hits.
BS05444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:28 Download gff for
BS05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:01 Download gff for
BS05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:49:33 Download gff for
BS05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 455..1107 | 12..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:56:47 Download gff for
BS05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 455..1107 | 12..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:56:47 Download gff for
BS05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1966816..1967139 | 12..337 | 99 | <- | Plus |
3L | 1967200..1967502 | 338..640 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:49:33 Download gff for
BS05444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1966816..1967139 | 12..337 | 99 | <- | Plus |
arm_3L | 1967200..1967502 | 338..640 | 100 | <- | Plus |
BS05444.complete Sequence
674 bp (674 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635116
> BS05444.complete
GAAGTTATCAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTG
AGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTC
GATGAGGAGACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTT
CCGCAAACACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCA
TATGCGATGAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCA
GCCACCGCGATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGA
ACGCGAGGACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGG
GCTACAACCGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGC
TACAACTTCGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCA
CATGATGTCCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACT
TCCGTAGTCCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGC
ACGGAAACCGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCA
GATGCGCAACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAA
TTGGATAAAAGCTTTCTAGACCAT
BS05444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-RA | 642 | CG1927-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
CG1927-RB | 633 | CG1927-PB | 9..633 | 34..658 | 3125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-RA | 1198 | CG1927-RA | 462..1104 | 16..658 | 3215 | 100 | Plus |
CG1927-RB | 744 | CG1927-RB | 26..650 | 34..658 | 3125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1966819..1967139 | 658..338 | 1605 | 100 | Minus |
3L | 28110227 | 3L | 1967200..1967504 | 337..33 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:38:10 has no hits.
BS05444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:39 Download gff for
BS05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:47 Download gff for
BS05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 451..1103 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:02 Download gff for
BS05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 463..1102 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:39 Download gff for
BS05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 451..1103 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:11 Download gff for
BS05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 463..1102 | 17..656 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:11 Download gff for
BS05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1966821..1967139 | 338..656 | 100 | <- | Minus |
3L | 1967200..1967502 | 35..337 | 100 | <- | Minus |
3L | 1969600..1969617 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:02 Download gff for
BS05444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1967200..1967502 | 35..337 | 100 | <- | Minus |
arm_3L | 1969600..1969617 | 17..34 | 100 | | Minus |
arm_3L | 1966821..1967139 | 338..656 | 100 | <- | Minus |
BS05444.pep Sequence
Translation from 16 to 657
> BS05444.pep
MGYSIKNCETGELEYFYTDTVRVNRPAFDEETGEPIHDQVTKVHFRKHTN
FHVPKHYLRGTICDEVDDELANTVRYGAATAIPNRAPKKVTPGYEREDYC
QMDGVSNNIILGYNRNPYLLFLVPTLFCYNFVIGATLALIEIVLHMMSHH
RNGLTMQKSLYFRSPLNVLSSQFCAICRTETDSKYNRIFDILNKQMRNAH
RSEALKDMAKAIG*
BS05444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-PA | 213 | CG1927-PA | 1..213 | 1..213 | 1140 | 100 | Plus |
CG1927-PB | 210 | CG1927-PB | 4..210 | 7..213 | 1109 | 100 | Plus |