Clone Sequence Records
BS05445.3prime Sequence
884 bp (854 high quality bases) assembled on 2005-12-02
> BS05445.3prime
ATGGTCTAGAAAGCTTTCAGGTGGACTGGCGTATCTTGATGCTGTCCCGA
TCCCGCTGATCCTGTTCGTCGCTGTCGCAGTCGCCGCTCTCGGCGGTGTC
CTCATCCTCGCTGGCGGAGCTATCCTTGGCGAACAGATGCCTTAGGCAGC
TCCGCTTCACGTATAAAAAAGCGCACAGGGCGCAGAGCAGGAAGATGACG
CCCACGGAACTGCCGATGATCAGGGCCCGCACTTTACGCTGCGATGGCAC
GTCGATGAGGAGCTCGTGACTGGGCACCGATTGCTGGGTTTCGGTGCCCA
CCGCCAGGACCTGCACCTTGAACAGTGTGTCCTCCTTGAGGTGGCGCAGC
TGGTAGTAGTTGTCGAAGGTCTCTGCGTGGCCGATGAGGAAATGCTCCGG
CTCCTTCCACCAACGAACGGCGTACAGGCGCAGGCCTTCCAATCCCTGGA
CGGGATGCTCCCAGTGGAGGAGCCAGCCCTGCTGGTTGCTAATGGCAGTG
AGATTCCAGGGAGCTCCCAGTCCCCCGGCAGGCGCAGTGACCTGACCCAG
ATCGTGTTGCAGCTGCTGGGCATCAAAGTCATCCGCTCTAATGGGCGAGG
GTAGCGTTTGAAAGCGGAACTGCTTGCTGAACATGCCGTCTCCGTACTTG
TCCTGGCTGAGCACCATAAATTCGTACTCTTTTCCTGGCTGAAGGTGCTG
CACCGTCGCCTCCATCACCTTTTTATCCAACACGCGAAGCGTTCGCCATT
CGGGTGCCTCCATGAGTCGATACCAAACAGTGTACTCCAAGTTGGGACGA
AGGTATCCTGGCTGCCAGCGTATGGTGATGCAGGTCTCCGTGCTGTTGGC
CGTGAGATTGTACGGCGCCCCGCGGTGCGATGTT
BS05445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16857-PA | 2160 | CG16857-RA | 1307..2160 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16857-RA | 2730 | CG16857-RA | 1648..2514 | 884..17 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4331031..4331614 | 600..17 | 2920 | 100 | Minus |
| 2L | 23513712 | 2L | 4330754..4330962 | 809..601 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 4330466..4330542 | 884..807 | 340 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:52:10 has no hits.
BS05445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:30 Download gff for
BS05445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-PA | 1294..2160 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:04 Download gff for
BS05445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-PA | 1294..2160 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:45 Download gff for
BS05445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-RA | 1648..2522 | 8..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:43 Download gff for
BS05445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-RA | 1648..2522 | 8..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:43 Download gff for
BS05445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4330466..4330541 | 808..884 | 98 | -> | Minus |
| 2L | 4330756..4330962 | 601..807 | 100 | -> | Minus |
| 2L | 4331031..4331622 | 8..600 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:45 Download gff for
BS05445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4330466..4330541 | 808..884 | 98 | -> | Minus |
| arm_2L | 4330756..4330962 | 601..807 | 100 | -> | Minus |
| arm_2L | 4331031..4331622 | 8..600 | 99 | | Minus |
BS05445.5prime Sequence
926 bp (839 high quality bases) assembled on 2005-12-02
> BS05445.5prime
GAAGTTATCAGTCGACATGCCAGCGAAACGCAGCAGAACATTCCGGCAAT
CCGGATCCGCGCTACTTGCTCTTCTGGCGATCATTCTCTTAATGAACATA
TCCTGTACGAGCGCTGCCCGCGATCACAGGCGGCAGACCAACCTGGAGGC
CAAGGTGGGCTCCCACGTGGTCTTCAACTGCTACATCGATTTCCCCTTCG
ATGCCCCCATTCCCTACTTGGTGCACTGGACAAAGGATAACAAGAAAATC
TTCACCTGGTACGAGCAGGAGACCTCCACCAGTGAGCTATTCAATGGCCG
ATTGCACCTGGTCGAGAACCATCCGGAATTTGGACGCGCCTCCGTGAATC
TGACCGCCATTCGGGAATCGGACCAGGGTTGGTACCACTGCCAAGTTAGC
TTTCCCAATCGCTCGCCCTCGGTTCGCAACAATGGCACGGCCTACCACCT
GGCCGTCCAGGGTGGCTCCCTCATCCGCATTCCGCCGGTGAATCAGACGA
TCCGGGAGGGACAGACCGCCTTCTTTCACTGCGTGATGAAGCATCCGGAG
AACTCGCAGGCCTCCTGGTACAAGGATGGCGTGCTGCTGCAAGAGGTCCA
GGATCTGGTGCGCAGATTCTACATGGGTCCCGATGGCAGCCTCAGCATCG
ATCCCACCATGATGAGCGACCTGNGCGAGTACGAGTGCAAGGTGCGCAAC
AGCGATGGCGAACTGCAGACGGCCAAGGCCTTTCTCAACATACAATATAA
GGCCAAGGTGATTTACGCCCCGCCGGAGGTTTTCCTGCCGTACGGCCAGC
CCGCCGTGCTCGATTGTCACTTCCGGGCGAATCCGCCGCTGAGGAATTTG
CGCTGGGAGAAGACGGCCTGCTCTTCGACTCGTACAATGTGCCCGGGGTC
TTCTACAAGATGACGGGCAGCTGTTC
BS05445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16857-PA | 2160 | CG16857-RA | 1..846 | 17..862 | 4161 | 99.6 | Plus |
| CG16857-PA | 2160 | CG16857-RA | 847..898 | 862..913 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16857-RA | 2730 | CG16857-RA | 350..1266 | 12..926 | 4449 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4328938..4329445 | 239..746 | 2529 | 99.8 | Plus |
| 2L | 23513712 | 2L | 4324903..4325129 | 12..238 | 1105 | 99.1 | Plus |
| 2L | 23513712 | 2L | 4329511..4329686 | 747..921 | 785 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:14:53 has no hits.
BS05445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:31 Download gff for
BS05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-PA | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:05 Download gff for
BS05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-PA | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:49:03 Download gff for
BS05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-RA | 348..1266 | 9..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:20 Download gff for
BS05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-RA | 348..1266 | 9..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:20 Download gff for
BS05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4324902..4325129 | 11..238 | 98 | -> | Plus |
| 2L | 4328938..4329445 | 239..746 | 99 | -> | Plus |
| 2L | 4329511..4329692 | 747..926 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:49:03 Download gff for
BS05445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4329511..4329692 | 747..926 | 97 | | Plus |
| arm_2L | 4324902..4325129 | 11..238 | 98 | -> | Plus |
| arm_2L | 4328938..4329445 | 239..746 | 99 | -> | Plus |
BS05445.complete Sequence
2192 bp assembled on 2009-08-24
GenBank Submission: KX795764
> BS05445.complete
GAAGTTATCAGTCGACATGCCAGCGAAACGCAGCAGAACATTCCGGCAAT
CCGGATCCGCGCTACTTGCTCTTCTGGCGATCATTCTCTTAATGAACATA
TCCTGTACGAGCGCTGCCCGCGATCACAGGCGGCAGACCAACCTGGAGGC
CAAGGTGGGCTCCCACGTGGTCTTCAACTGCTACATCGATTTCCCCTTCG
ATGCCCCCATTCCCTACTTGGTGCACTGGACAAAGGATAACAAGAAAATC
TTCACCTGGTACGAGCAGGAGACCTCCACCAGTGAGCTATTCAATGGCCG
ATTGCACCTGGTCGAGAACCATCCGGAATTTGGACGCGCCTCCGTGAATC
TGACCGCCATTCGGGAATCGGACCAGGGTTGGTACCACTGCCAAGTTAGC
TTTCCCAATCGCTCGCCCTCGGTTCGCAACAATGGCACGGCCTACCACCT
GGCCGTCCAGGGTGGCTCCCTCATCCGCATTCCGCCGGTGAATCAGACGA
TCCGGGAGGGACAGACCGCCTTCTTTCACTGCGTGATGAAGCATCCGGAG
AACTCGCAGGCCTCCTGGTACAAGGATGGCGTGCTGCTGCAAGAGGTCCA
GGATCTGGTGCGCAGATTCTACATGGGTCCCGATGGCAGCCTCAGCATCG
ATCCCACCATGATGAGCGACCTGGGCGAGTACGAGTGCAAGGTGCGCAAC
AGCGATGGCGAACTGCAGACGGCCAAGGCCTTTCTCAACATACAATATAA
GGCCAAGGTGATTTACGCCCCGCCGGAGGTTTTCCTGCCGTACGGCCAGC
CCGCCGTGCTCGATTGTCACTTCCGGGCGAATCCGCCGCTGAAGAATTTG
CGCTGGGAGAAGGACGGCCTGCTCTTCGACTCGTACAATGTGCCCGGGGT
CTTCTACAAGATGAACGGCAGCCTGTTCTTCGCCAAAGTGGACGAGAACC
ATGCCGGCAGCTACACTTGCACGCCCTACAACGACCTCGGCACGGACGGA
CCATCGCCGGTCATCAGCGTGATTGTGCTCCGACCGCCCATCTTCAGCGT
CACGCCCAAGGCCATCTACATCCAGAAGCTGGGCGAGGCCGCCGAGCTGC
CCTGCGAAGCCATCGACCGCGACGGAAACAATCGGCCCTCCATTATCTGG
GGCAGGAAAGACGGGCAGCCGCTGCCGGCGGACAGGTTCAGTCTCAGCGG
CGGCAATCTGACTATCACGGGATTGGTGGAGGGGGACCGTGGAATATACG
AGTGCTCGGCGACCAACGAGGCGGCCACCATTACGGCGGAGGCCGAGCTC
ATGATTGAGAACATCGCACCGCGGGCGCCGTACAATCTCACGGCCAACAG
CACGGAGACCTGCATCACCATACGCTGGCAGCCAGGATACCTTCGTCCCA
ACTTGGAGTACACTGTTTGGTATCGACTCATGGAGGCACCCGAATGGCGA
ACGCTTCGCGTGTTGGATAAAAAGGTGATGGAGGCGACGGTGCAGCACCT
TCAGCCAGGAAAAGAGTACGAATTTATGGTGCTCAGCCAGGACAAGTACG
GAGACGGCATGTTCAGCAAGCAGTTCCGCTTTCAAACGCTACCCTCGCCC
ATTAGAGCGGATGACTTTGATGCCCAGCAGCTGCAACACGATCTGGGTCA
GGTCACTGCGCCTGCCGGGGGACTGGGAGCTCCCTGGAATCTCACTGCCA
TTAGCAACCAGCAGGGCTGGCTCCTCCACTGGGAGCATCCCGTCCAGGGA
TTGGAAGGCCTGCGCCTGTACGCCGTTCGTTGGTGGAAGGAGCCGGAGCA
TTTCCTCATCGGCCACGCAGAGACCTTCGACAACTACTACCAGCTGCGCC
ACCTCAAGGAGGACACACTGTTCAAGGTGCAGGTCCTGGCGGTGGGCACC
GAAACCCAGCAATCGGTGCCCAGTCACGAGCTCCTCATCGACGTGCCATC
GCAGCGTAAAGTGCGGGCCCTGATCATCGGCAGTTCCGTGGGCGTCATCT
TCCTGCTCTGCGCCCTGTGCGCTTTTTTATACGTGAAGCGGAGCTGCCTA
AGGCATCTGTTCGCCAAGGATAGCTCCGCCAGCGAGGATGAGGACACCGC
CGAGAGCGGCGACTGCGACAGCGACGAACAGGATCAGCGGGATCGGGACA
GCATCAAGATACGCCAGTCCACCTGAAAGCTTTCTAGACCAT
BS05445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16857-RA | 2160 | CG16857-PA | 1..2160 | 17..2176 | 10785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16857-RA | 2730 | CG16857-RA | 350..2514 | 12..2176 | 10795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4331031..4331614 | 1593..2176 | 2920 | 100 | Plus |
| 2L | 23513712 | 2L | 4328938..4329445 | 239..746 | 2540 | 100 | Plus |
| 2L | 23513712 | 2L | 4329511..4329920 | 747..1156 | 2050 | 100 | Plus |
| 2L | 23513712 | 2L | 4330312..4330542 | 1156..1386 | 1155 | 100 | Plus |
| 2L | 23513712 | 2L | 4324903..4325129 | 12..238 | 1105 | 99.1 | Plus |
| 2L | 23513712 | 2L | 4330754..4330962 | 1384..1592 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:30:32 has no hits.
BS05445.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:19 Download gff for
BS05445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-RA | 336..2494 | 17..2175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:40 Download gff for
BS05445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-RA | 355..2513 | 17..2175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:16 Download gff for
BS05445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16857-RA | 355..2513 | 17..2175 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:16 Download gff for
BS05445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4330313..4330541 | 1157..1385 | 100 | -> | Plus |
| 2L | 4330756..4330962 | 1386..1592 | 100 | -> | Plus |
| 2L | 4324908..4325129 | 17..238 | 99 | -> | Plus |
| 2L | 4328938..4329445 | 239..746 | 100 | -> | Plus |
| 2L | 4329511..4329920 | 747..1156 | 100 | -> | Plus |
| 2L | 4331031..4331613 | 1593..2175 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:40 Download gff for
BS05445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4324908..4325129 | 17..238 | 99 | -> | Plus |
| arm_2L | 4328938..4329445 | 239..746 | 100 | -> | Plus |
| arm_2L | 4329511..4329920 | 747..1156 | 100 | -> | Plus |
| arm_2L | 4330313..4330541 | 1157..1385 | 100 | -> | Plus |
| arm_2L | 4330756..4330962 | 1386..1592 | 100 | -> | Plus |
| arm_2L | 4331031..4331613 | 1593..2175 | 100 | | Plus |
BS05445.pep Sequence
Translation from 16 to 2175
> BS05445.pep
MPAKRSRTFRQSGSALLALLAIILLMNISCTSAARDHRRQTNLEAKVGSH
VVFNCYIDFPFDAPIPYLVHWTKDNKKIFTWYEQETSTSELFNGRLHLVE
NHPEFGRASVNLTAIRESDQGWYHCQVSFPNRSPSVRNNGTAYHLAVQGG
SLIRIPPVNQTIREGQTAFFHCVMKHPENSQASWYKDGVLLQEVQDLVRR
FYMGPDGSLSIDPTMMSDLGEYECKVRNSDGELQTAKAFLNIQYKAKVIY
APPEVFLPYGQPAVLDCHFRANPPLKNLRWEKDGLLFDSYNVPGVFYKMN
GSLFFAKVDENHAGSYTCTPYNDLGTDGPSPVISVIVLRPPIFSVTPKAI
YIQKLGEAAELPCEAIDRDGNNRPSIIWGRKDGQPLPADRFSLSGGNLTI
TGLVEGDRGIYECSATNEAATITAEAELMIENIAPRAPYNLTANSTETCI
TIRWQPGYLRPNLEYTVWYRLMEAPEWRTLRVLDKKVMEATVQHLQPGKE
YEFMVLSQDKYGDGMFSKQFRFQTLPSPIRADDFDAQQLQHDLGQVTAPA
GGLGAPWNLTAISNQQGWLLHWEHPVQGLEGLRLYAVRWWKEPEHFLIGH
AETFDNYYQLRHLKEDTLFKVQVLAVGTETQQSVPSHELLIDVPSQRKVR
ALIIGSSVGVIFLLCALCAFLYVKRSCLRHLFAKDSSASEDEDTAESGDC
DSDEQDQRDRDSIKIRQST*
BS05445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16857-PA | 719 | CG16857-PA | 1..719 | 1..719 | 3835 | 100 | Plus |
| tutl-PE | 902 | CG15427-PE | 267..882 | 47..677 | 893 | 32.1 | Plus |
| tutl-PC | 903 | CG15427-PC | 267..882 | 47..677 | 893 | 32.1 | Plus |
| tutl-PI | 963 | CG15427-PI | 267..882 | 47..677 | 893 | 32.1 | Plus |
| tutl-PF | 963 | CG15427-PF | 267..882 | 47..677 | 893 | 32.1 | Plus |
| tutl-PE | 902 | CG15427-PE | 115..524 | 16..424 | 370 | 28.8 | Plus |
| tutl-PC | 903 | CG15427-PC | 115..524 | 16..424 | 370 | 28.8 | Plus |
| tutl-PI | 963 | CG15427-PI | 115..524 | 16..424 | 370 | 28.8 | Plus |
