Clone BS05446 Report

Search the DGRC for BS05446

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG4766-RA
Protein status:BS05446.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05446.3prime Sequence

906 bp (805 high quality bases) assembled on 2005-12-02

> BS05446.3prime
ATGGTCTAGAAAGCTTTTACAACTTCTCAAAGGCGTTGGCATTTGTGAGG
AGCTCGCGGGTCAAGCGCCACACCTGCTTGGCCGCCTGCTCCAAAGCACT
GGGGGATTTACCCTTGAACATGTCCAGTGCGGGAAGGAAGTAGTGGGGAC
AACGGCGATACTGCAGACAGGATATCAGCTGCAGGAATATCCCATTGATG
CGGTCAGCGATGCAGCCCTCGTCCCACTCAAAGTCCCGCGGATGCTTCTC
GCACTCGTAGAGCAGCAGGTTCTTCAGGTGATACGCACTGATGGGATTGC
CTGGTAAATCCAGATGCCTGTCCCTCAGGGTCTTCAGCATGCTCAGACAA
CGTCGACGACAGCCACCTTGCAGCAGACGGTTTTCGGCCTCGAAGAAGCT
GAGCACCCAGGCATCGCCCTCCATGCTGGCGGCATTGTTGTTCTTGTTCT
GCATGATGACGCTCTCCTTGGACAGAAGATCGAAGCCCTCGGTCTTGACC
TCCGCCACGATGTTGGGATGTGGCCACGGGAGATGTGGTACCGGCCAGTG
GGCCGCCGATCTTGGCCAGATGCCTGAGCACTTAAATGCCGGCGTAATCT
GGACCACGAATCGCTCCCGAATGCGCAACTTCACCTCGCTGGTGTCGCCC
ACCATTTTGACCATGTCGCGGTAGACACTTTTATCGCACGCCTGGGCCAC
CAGAGTCTGGAAACGGGCACGGATCTTCCGGGAGGACAAATAACCACTGG
CCGTTATGAACTCCACCCACAGGGACATGGACCGCTTCCTTCCATCGCTC
AGCTTCAGAACAGCACATCCCGGCAAGGTGCCATCGTCCACGAAATTGAA
GACACCCATTTTGATCAGATACAGCACTATCTCGAATTCATTCGGGGATA
TCACTT

BS05446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-PA 1107 CG4766-RA 263..1107 861..17 4225 100 Minus
CG4746-PA 1098 mab-2-RA 283..404 841..720 385 92.6 Minus
CG4746-PA 1098 mab-2-RA 900..980 215..135 230 91.3 Minus
CG4766-PA 1107 CG4766-RA 218..259 906..865 210 100 Minus
CG4746-PA 1098 mab-2-RA 690..749 425..366 175 91.6 Minus
CG4746-PA 1098 mab-2-RA 835..878 280..237 170 95.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-RA 2673 CG4766-RA 819..1708 906..17 4405 99.8 Minus
mab-21-RA 2082 CG4746-RA 624..1408 859..66 1735 81.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5998945..5999486 365..906 2665 99.4 Plus
X 23542271 X 5998473..5998824 17..368 1760 100 Plus
X 23542271 X 6012072..6012558 364..859 1080 81.7 Plus
X 23542271 X 6008857..6009151 66..360 650 81.4 Plus
Blast to na_te.dros performed on 2015-02-11 17:46:21 has no hits.

BS05446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:31 Download gff for BS05446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4766-PA 218..1107 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:06 Download gff for BS05446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4766-PA 218..1107 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:53:31 Download gff for BS05446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 819..1714 9..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:26 Download gff for BS05446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 819..1714 9..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:26 Download gff for BS05446.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5998467..5998822 9..366 98 <- Plus
X 5998947..5999486 367..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:53:31 Download gff for BS05446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5892500..5892855 9..366 98 <- Plus
arm_X 5892980..5893519 367..906 99   Plus

BS05446.5prime Sequence

945 bp (728 high quality bases) assembled on 2005-11-29

> BS05446.5prime
GAAGTTATCAGTCGACATGCTGGTGCCGCCGGACATGATGGCCGCCCAGA
CGCGCATGGTCTATCAGATGAATCGATTCTGCACGGAGAGGGTTCAGGCC
AGGATGTACAAGACGGCCACCGCCATCCGGGAGATCTGCAAGATCGTCCA
GGACATCCTCAAAGAGGTGGAACTGCAGGAGCCGCGATTCATCTCCAGCC
TCGTCGAGTGCAATGGCAGATTCGAGGGCGTTGAAGTGATATCCCCGAAT
GAATTCGAGATAGTGCTGTATCTGAATCAAATGGGTGTCTTCAATTTCGT
GGACGATGGCACCTTGCCGGGATGTGCTGTTCTGAAGCTGAGCGATGGAA
GGAAGCGGTCCATGTCCCTGTGGGTGGAGTTCATAACGGCCAGTGGTTAT
TTGTCCTCCCGGAAGATCCGTGCCCGTTTCCAGACTCTGGTGGCCCAGGC
GTGCGATAAAAGTGTCTACCGCGACATGGTCAAAATGGTGGGCGACACCA
GCGAGGTGAAGTTGCGCATTCGGGAGCGATTCGTGGTCCAGATTACGCCG
GCATTTAAGTGCTCAGGCATCTGGCCAAGATCGGCGGCCCACTGGCCGGT
ACCACATCTCCCGTGGCCACATCCCAACATCGTGGCGGAGGTCAAGACCG
AGGGCTTCGATCTTCTGTCCAAGGAGAGCGTCATCATGCAGAACAAGAAC
AACAATGCCGCCAGCATGGAGGGCGATGCCTGGGTGCTCAGCTTCTTCGA
GGCCGAAAACCGTCTGCTGCAAGGTGGCTGTCGTCGACGTTGTCTGAGCA
TGCTGAAGACCCTGAGGGACAGGCATCTGGATTTACCCAGGCATCCCATC
AGTGCGTATCACCTGAAGAACCTGCTGCTCTACGAGTGCGAGAAGCATCC
GCGGGACTTTGAGTGGGACGAGGGCTGCATCGCTGACCGCATCAA

BS05446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-PA 1107 CG4766-RA 1..821 17..837 4105 100 Plus
CG4766-PA 1107 CG4766-RA 827..929 843..945 515 100 Plus
CG4746-PA 1098 mab-2-RA 283..404 299..420 385 92.6 Plus
CG4746-PA 1098 mab-2-RA 690..749 715..774 175 91.6 Plus
CG4746-PA 1098 mab-2-RA 835..878 860..903 170 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-RA 2673 CG4766-RA 601..1530 16..945 4605 99.8 Plus
mab-21-RA 2082 CG4746-RA 486..1279 143..945 1585 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5998945..5999503 775..217 2795 100 Minus
X 23542271 X 6012072..6012696 776..143 1260 80.3 Minus
X 23542271 X 5999994..6000197 219..16 1020 100 Minus
X 23542271 X 5998651..5998824 945..772 810 97.7 Minus
X 23542271 X 6008986..6009151 945..780 320 79.5 Minus
Blast to na_te.dros performed on 2015-02-02 12:08:29 has no hits.

BS05446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:32 Download gff for BS05446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4766-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:08 Download gff for BS05446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4766-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:39 Download gff for BS05446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 596..1528 10..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:22 Download gff for BS05446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 596..1528 10..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:22 Download gff for BS05446.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5998653..5998822 774..943 98 <- Minus
X 5998947..5999500 220..773 100 <- Minus
X 5999994..6000202 10..219 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:39 Download gff for BS05446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5892686..5892855 774..943 98 <- Minus
arm_X 5892980..5893533 220..773 100 <- Minus
arm_X 5894027..5894235 10..219 98   Minus

BS05446.complete Sequence

1139 bp (1139 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638782

> BS05446.complete
GAAGTTATCAGTCGACATGCTGGTGCCGCCGGACATGATGGCCGCCCAGA
CGCGCATGGTCTATCAGATGAATCGATTCTGCACGGAGAGGGTTCAGGCC
AGGATGTACAAGACGGCCACCGCCATCCGGGAGATCTGCAAGATCGTCCA
GGACATCCTCAAAGAGGTGGAACTGCAGGAGCCGCGATTCATCTCCAGCC
TCGTCGAGTGCAATGGCAGATTCGAGGGCGTTGAAGTGATATCCCCGAAT
GAATTCGAGATAGTGCTGTATCTGAATCAAATGGGTGTCTTCAATTTCGT
GGACGATGGCACCTTGCCGGGATGTGCTGTTCTGAAGCTGAGCGATGGAA
GGAAGCGGTCCATGTCCCTGTGGGTGGAGTTCATAACGGCCAGTGGTTAT
TTGTCCTCCCGGAAGATCCGTGCCCGTTTCCAGACTCTGGTGGCCCAGGC
GTGCGATAAAAGTGTCTACCGCGACATGGTCAAAATGGTGGGCGACACCA
GCGAGGTGAAGTTGCGCATTCGGGAGCGATTCGTGGTCCAGATTACGCCG
GCATTTAAGTGCTCAGGCATCTGGCCAAGATCGGCGGCCCACTGGCCGGT
ACCACATCTCCCGTGGCCACATCCCAACATCGTGGCGGAGGTCAAGACCG
AGGGCTTCGATCTTCTGTCCAAGGAGAGCGTCATCATGCAGAACAAGAAC
AACAATGCCGCCAGCATGGAGGGCGATGCCTGGGTGCTCAGCTTCTTCGA
GGCCGAAAACCGTCTGCTGCAAGGTGGCTGTCGTCGACGTTGTCTGAGCA
TGCTGAAGACCCTGAGGGACAGGCATCTGGATTTACCAGGCAATCCCATC
AGTGCGTATCACCTGAAGAACCTGCTGCTCTACGAGTGCGAGAAGCATCC
GCGGGACTTTGAGTGGGACGAGGGCTGCATCGCTGACCGCATCAATGGGA
TATTCCTGCAGCTGATATCCTGTCTGCAGTATCGCCGTTGTCCCCACTAC
TTCCTTCCCGCACTGGACATGTTCAAGGGTAAATCCCCCAGTGCTTTGGA
GCAGGCGGCCAAGCAGGTGTGGCGCTTGACCCGCGAGCTCCTCACAAATG
CCAACGCCTTTGAGAAGTTGTAAAAGCTTTCTAGACCAT

BS05446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-RA 1107 CG4766-PA 1..1107 17..1123 5535 100 Plus
mab-21-RA 1098 CG4746-PA 127..1049 143..1074 1865 80.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-RA 2673 CG4766-RA 601..1708 16..1123 5540 100 Plus
mab-21-RA 2082 CG4746-RA 486..1408 143..1074 1865 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5998945..5999503 775..217 2795 100 Minus
X 23542271 X 5998473..5998824 1123..772 1760 100 Minus
X 23542271 X 6012072..6012696 776..143 1260 80.3 Minus
X 23542271 X 5999994..6000197 219..16 1020 100 Minus
X 23542271 X 6008857..6009151 1074..780 650 81.4 Minus
Blast to na_te.dros performed on 2014-11-27 16:00:26 has no hits.

BS05446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:22 Download gff for BS05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 1..1107 17..1123 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:19 Download gff for BS05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 596..1714 10..1131 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:32 Download gff for BS05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 602..1706 17..1121 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:22 Download gff for BS05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 596..1714 10..1131 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:05 Download gff for BS05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG4766-RA 602..1706 17..1121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:05 Download gff for BS05446.complete
Subject Subject Range Query Range Percent Splice Strand
X 5998475..5998822 774..1121 100 <- Minus
X 5998947..5999500 220..773 100 <- Minus
X 5999994..6000196 17..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:32 Download gff for BS05446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5892508..5892855 774..1121 100 <- Minus
arm_X 5892980..5893533 220..773 100 <- Minus
arm_X 5894027..5894229 17..219 100   Minus

BS05446.pep Sequence

Translation from 16 to 1122

> BS05446.pep
MLVPPDMMAAQTRMVYQMNRFCTERVQARMYKTATAIREICKIVQDILKE
VELQEPRFISSLVECNGRFEGVEVISPNEFEIVLYLNQMGVFNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSSRKIRARFQTLVAQACDKSV
YRDMVKMVGDTSEVKLRIRERFVVQITPAFKCSGIWPRSAAHWPVPHLPW
PHPNIVAEVKTEGFDLLSKESVIMQNKNNNAASMEGDAWVLSFFEAENRL
LQGGCRRRCLSMLKTLRDRHLDLPGNPISAYHLKNLLLYECEKHPRDFEW
DEGCIADRINGIFLQLISCLQYRRCPHYFLPALDMFKGKSPSALEQAAKQ
VWRLTRELLTNANAFEKL*

BS05446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4766-PA 368 CG4766-PA 1..368 1..368 1941 100 Plus
mab-21-PA 365 CG4746-PA 1..365 1..368 1567 77.7 Plus