Clone Sequence Records
BS05446.3prime Sequence
906 bp (805 high quality bases) assembled on 2005-12-02
> BS05446.3prime
ATGGTCTAGAAAGCTTTTACAACTTCTCAAAGGCGTTGGCATTTGTGAGG
AGCTCGCGGGTCAAGCGCCACACCTGCTTGGCCGCCTGCTCCAAAGCACT
GGGGGATTTACCCTTGAACATGTCCAGTGCGGGAAGGAAGTAGTGGGGAC
AACGGCGATACTGCAGACAGGATATCAGCTGCAGGAATATCCCATTGATG
CGGTCAGCGATGCAGCCCTCGTCCCACTCAAAGTCCCGCGGATGCTTCTC
GCACTCGTAGAGCAGCAGGTTCTTCAGGTGATACGCACTGATGGGATTGC
CTGGTAAATCCAGATGCCTGTCCCTCAGGGTCTTCAGCATGCTCAGACAA
CGTCGACGACAGCCACCTTGCAGCAGACGGTTTTCGGCCTCGAAGAAGCT
GAGCACCCAGGCATCGCCCTCCATGCTGGCGGCATTGTTGTTCTTGTTCT
GCATGATGACGCTCTCCTTGGACAGAAGATCGAAGCCCTCGGTCTTGACC
TCCGCCACGATGTTGGGATGTGGCCACGGGAGATGTGGTACCGGCCAGTG
GGCCGCCGATCTTGGCCAGATGCCTGAGCACTTAAATGCCGGCGTAATCT
GGACCACGAATCGCTCCCGAATGCGCAACTTCACCTCGCTGGTGTCGCCC
ACCATTTTGACCATGTCGCGGTAGACACTTTTATCGCACGCCTGGGCCAC
CAGAGTCTGGAAACGGGCACGGATCTTCCGGGAGGACAAATAACCACTGG
CCGTTATGAACTCCACCCACAGGGACATGGACCGCTTCCTTCCATCGCTC
AGCTTCAGAACAGCACATCCCGGCAAGGTGCCATCGTCCACGAAATTGAA
GACACCCATTTTGATCAGATACAGCACTATCTCGAATTCATTCGGGGATA
TCACTT
BS05446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-PA | 1107 | CG4766-RA | 263..1107 | 861..17 | 4225 | 100 | Minus |
CG4746-PA | 1098 | mab-2-RA | 283..404 | 841..720 | 385 | 92.6 | Minus |
CG4746-PA | 1098 | mab-2-RA | 900..980 | 215..135 | 230 | 91.3 | Minus |
CG4766-PA | 1107 | CG4766-RA | 218..259 | 906..865 | 210 | 100 | Minus |
CG4746-PA | 1098 | mab-2-RA | 690..749 | 425..366 | 175 | 91.6 | Minus |
CG4746-PA | 1098 | mab-2-RA | 835..878 | 280..237 | 170 | 95.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-RA | 2673 | CG4766-RA | 819..1708 | 906..17 | 4405 | 99.8 | Minus |
mab-21-RA | 2082 | CG4746-RA | 624..1408 | 859..66 | 1735 | 81.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5998945..5999486 | 365..906 | 2665 | 99.4 | Plus |
X | 23542271 | X | 5998473..5998824 | 17..368 | 1760 | 100 | Plus |
X | 23542271 | X | 6012072..6012558 | 364..859 | 1080 | 81.7 | Plus |
X | 23542271 | X | 6008857..6009151 | 66..360 | 650 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:46:21 has no hits.
BS05446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:31 Download gff for
BS05446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-PA | 218..1107 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:06 Download gff for
BS05446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-PA | 218..1107 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:53:31 Download gff for
BS05446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 819..1714 | 9..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:26 Download gff for
BS05446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 819..1714 | 9..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:26 Download gff for
BS05446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5998467..5998822 | 9..366 | 98 | <- | Plus |
X | 5998947..5999486 | 367..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:53:31 Download gff for
BS05446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5892500..5892855 | 9..366 | 98 | <- | Plus |
arm_X | 5892980..5893519 | 367..906 | 99 | | Plus |
BS05446.5prime Sequence
945 bp (728 high quality bases) assembled on 2005-11-29
> BS05446.5prime
GAAGTTATCAGTCGACATGCTGGTGCCGCCGGACATGATGGCCGCCCAGA
CGCGCATGGTCTATCAGATGAATCGATTCTGCACGGAGAGGGTTCAGGCC
AGGATGTACAAGACGGCCACCGCCATCCGGGAGATCTGCAAGATCGTCCA
GGACATCCTCAAAGAGGTGGAACTGCAGGAGCCGCGATTCATCTCCAGCC
TCGTCGAGTGCAATGGCAGATTCGAGGGCGTTGAAGTGATATCCCCGAAT
GAATTCGAGATAGTGCTGTATCTGAATCAAATGGGTGTCTTCAATTTCGT
GGACGATGGCACCTTGCCGGGATGTGCTGTTCTGAAGCTGAGCGATGGAA
GGAAGCGGTCCATGTCCCTGTGGGTGGAGTTCATAACGGCCAGTGGTTAT
TTGTCCTCCCGGAAGATCCGTGCCCGTTTCCAGACTCTGGTGGCCCAGGC
GTGCGATAAAAGTGTCTACCGCGACATGGTCAAAATGGTGGGCGACACCA
GCGAGGTGAAGTTGCGCATTCGGGAGCGATTCGTGGTCCAGATTACGCCG
GCATTTAAGTGCTCAGGCATCTGGCCAAGATCGGCGGCCCACTGGCCGGT
ACCACATCTCCCGTGGCCACATCCCAACATCGTGGCGGAGGTCAAGACCG
AGGGCTTCGATCTTCTGTCCAAGGAGAGCGTCATCATGCAGAACAAGAAC
AACAATGCCGCCAGCATGGAGGGCGATGCCTGGGTGCTCAGCTTCTTCGA
GGCCGAAAACCGTCTGCTGCAAGGTGGCTGTCGTCGACGTTGTCTGAGCA
TGCTGAAGACCCTGAGGGACAGGCATCTGGATTTACCCAGGCATCCCATC
AGTGCGTATCACCTGAAGAACCTGCTGCTCTACGAGTGCGAGAAGCATCC
GCGGGACTTTGAGTGGGACGAGGGCTGCATCGCTGACCGCATCAA
BS05446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-PA | 1107 | CG4766-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
CG4766-PA | 1107 | CG4766-RA | 827..929 | 843..945 | 515 | 100 | Plus |
CG4746-PA | 1098 | mab-2-RA | 283..404 | 299..420 | 385 | 92.6 | Plus |
CG4746-PA | 1098 | mab-2-RA | 690..749 | 715..774 | 175 | 91.6 | Plus |
CG4746-PA | 1098 | mab-2-RA | 835..878 | 860..903 | 170 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-RA | 2673 | CG4766-RA | 601..1530 | 16..945 | 4605 | 99.8 | Plus |
mab-21-RA | 2082 | CG4746-RA | 486..1279 | 143..945 | 1585 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5998945..5999503 | 775..217 | 2795 | 100 | Minus |
X | 23542271 | X | 6012072..6012696 | 776..143 | 1260 | 80.3 | Minus |
X | 23542271 | X | 5999994..6000197 | 219..16 | 1020 | 100 | Minus |
X | 23542271 | X | 5998651..5998824 | 945..772 | 810 | 97.7 | Minus |
X | 23542271 | X | 6008986..6009151 | 945..780 | 320 | 79.5 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:08:29 has no hits.
BS05446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:32 Download gff for
BS05446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:08 Download gff for
BS05446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:39 Download gff for
BS05446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 596..1528 | 10..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:22 Download gff for
BS05446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 596..1528 | 10..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:22 Download gff for
BS05446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5998653..5998822 | 774..943 | 98 | <- | Minus |
X | 5998947..5999500 | 220..773 | 100 | <- | Minus |
X | 5999994..6000202 | 10..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:39 Download gff for
BS05446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5892686..5892855 | 774..943 | 98 | <- | Minus |
arm_X | 5892980..5893533 | 220..773 | 100 | <- | Minus |
arm_X | 5894027..5894235 | 10..219 | 98 | | Minus |
BS05446.complete Sequence
1139 bp (1139 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638782
> BS05446.complete
GAAGTTATCAGTCGACATGCTGGTGCCGCCGGACATGATGGCCGCCCAGA
CGCGCATGGTCTATCAGATGAATCGATTCTGCACGGAGAGGGTTCAGGCC
AGGATGTACAAGACGGCCACCGCCATCCGGGAGATCTGCAAGATCGTCCA
GGACATCCTCAAAGAGGTGGAACTGCAGGAGCCGCGATTCATCTCCAGCC
TCGTCGAGTGCAATGGCAGATTCGAGGGCGTTGAAGTGATATCCCCGAAT
GAATTCGAGATAGTGCTGTATCTGAATCAAATGGGTGTCTTCAATTTCGT
GGACGATGGCACCTTGCCGGGATGTGCTGTTCTGAAGCTGAGCGATGGAA
GGAAGCGGTCCATGTCCCTGTGGGTGGAGTTCATAACGGCCAGTGGTTAT
TTGTCCTCCCGGAAGATCCGTGCCCGTTTCCAGACTCTGGTGGCCCAGGC
GTGCGATAAAAGTGTCTACCGCGACATGGTCAAAATGGTGGGCGACACCA
GCGAGGTGAAGTTGCGCATTCGGGAGCGATTCGTGGTCCAGATTACGCCG
GCATTTAAGTGCTCAGGCATCTGGCCAAGATCGGCGGCCCACTGGCCGGT
ACCACATCTCCCGTGGCCACATCCCAACATCGTGGCGGAGGTCAAGACCG
AGGGCTTCGATCTTCTGTCCAAGGAGAGCGTCATCATGCAGAACAAGAAC
AACAATGCCGCCAGCATGGAGGGCGATGCCTGGGTGCTCAGCTTCTTCGA
GGCCGAAAACCGTCTGCTGCAAGGTGGCTGTCGTCGACGTTGTCTGAGCA
TGCTGAAGACCCTGAGGGACAGGCATCTGGATTTACCAGGCAATCCCATC
AGTGCGTATCACCTGAAGAACCTGCTGCTCTACGAGTGCGAGAAGCATCC
GCGGGACTTTGAGTGGGACGAGGGCTGCATCGCTGACCGCATCAATGGGA
TATTCCTGCAGCTGATATCCTGTCTGCAGTATCGCCGTTGTCCCCACTAC
TTCCTTCCCGCACTGGACATGTTCAAGGGTAAATCCCCCAGTGCTTTGGA
GCAGGCGGCCAAGCAGGTGTGGCGCTTGACCCGCGAGCTCCTCACAAATG
CCAACGCCTTTGAGAAGTTGTAAAAGCTTTCTAGACCAT
BS05446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-RA | 1107 | CG4766-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
mab-21-RA | 1098 | CG4746-PA | 127..1049 | 143..1074 | 1865 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-RA | 2673 | CG4766-RA | 601..1708 | 16..1123 | 5540 | 100 | Plus |
mab-21-RA | 2082 | CG4746-RA | 486..1408 | 143..1074 | 1865 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5998945..5999503 | 775..217 | 2795 | 100 | Minus |
X | 23542271 | X | 5998473..5998824 | 1123..772 | 1760 | 100 | Minus |
X | 23542271 | X | 6012072..6012696 | 776..143 | 1260 | 80.3 | Minus |
X | 23542271 | X | 5999994..6000197 | 219..16 | 1020 | 100 | Minus |
X | 23542271 | X | 6008857..6009151 | 1074..780 | 650 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:00:26 has no hits.
BS05446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:22 Download gff for
BS05446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 1..1107 | 17..1123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:19 Download gff for
BS05446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 596..1714 | 10..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:32 Download gff for
BS05446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 602..1706 | 17..1121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:22 Download gff for
BS05446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 596..1714 | 10..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:05 Download gff for
BS05446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 602..1706 | 17..1121 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:05 Download gff for
BS05446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5998475..5998822 | 774..1121 | 100 | <- | Minus |
X | 5998947..5999500 | 220..773 | 100 | <- | Minus |
X | 5999994..6000196 | 17..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:32 Download gff for
BS05446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5892508..5892855 | 774..1121 | 100 | <- | Minus |
arm_X | 5892980..5893533 | 220..773 | 100 | <- | Minus |
arm_X | 5894027..5894229 | 17..219 | 100 | | Minus |
BS05446.pep Sequence
Translation from 16 to 1122
> BS05446.pep
MLVPPDMMAAQTRMVYQMNRFCTERVQARMYKTATAIREICKIVQDILKE
VELQEPRFISSLVECNGRFEGVEVISPNEFEIVLYLNQMGVFNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSSRKIRARFQTLVAQACDKSV
YRDMVKMVGDTSEVKLRIRERFVVQITPAFKCSGIWPRSAAHWPVPHLPW
PHPNIVAEVKTEGFDLLSKESVIMQNKNNNAASMEGDAWVLSFFEAENRL
LQGGCRRRCLSMLKTLRDRHLDLPGNPISAYHLKNLLLYECEKHPRDFEW
DEGCIADRINGIFLQLISCLQYRRCPHYFLPALDMFKGKSPSALEQAAKQ
VWRLTRELLTNANAFEKL*
BS05446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-PA | 368 | CG4766-PA | 1..368 | 1..368 | 1941 | 100 | Plus |
mab-21-PA | 365 | CG4746-PA | 1..365 | 1..368 | 1567 | 77.7 | Plus |