Clone Sequence Records
BS05448.3prime Sequence
941 bp (734 high quality bases) assembled on 2005-12-02
> BS05448.3prime
ATGGTCTAGAAAGCTTTCAGCAGTTTCCTGGCCAAGTTCGTGGTCTCAGC
CTCCTGTCTCCTTCATTCCCATAGCCCAATCCCGAATAGCTGGCATGCAA
AAAGTTCGGCGGAAGTTCCCTTGGACTATAAGGATCATACCTGAGCATCT
GTTGTTGATTCCACTGCATCATAGGATTACTATGACTGAGCCAAGGATTA
TGGGATTGGTTCCACGGACTATCATTTGTGATCACTGGTTCCTGCGGAGC
AGGCACAATTTCCCGACTTACAGCAGCCTTGTCCAGGGATTTTCTATTTG
GTGACGTTTCTTTTCTACCATTTAGTACGGATTTCCTATCGAGGGAGTTT
TTCAAACAAAGTTTTACACGCCCGAATCGAAAGGATATCGTTCCATTCAG
TTCGATCAGTTTCTTGTGCGATTCATTGTCAACTGCCATGGAAAGATGCA
GTAGCTCACCGTGGGTCAACCTGTTCATAACCCTCCATTCCGCCGTTGAG
ACTGGGTTCTGGGCCTGAATGATTTCCAAGACCTTCTGGCTGCTGGTGGT
TAGACTATCTGGAAAATATCCGAGAACGACATTCCTCCTTGGCAGTTCAG
ACTCATCCATTAGCTTCAGCTTAGTGGTTACTTTCGACTGGATGTGGCAA
AAATTTTGTTTGAACCATTCTGAGGTGGAGGAGTTGGAACAAGTCACAAG
GAGCCATCCTCTTCGAGCCACACATCCCTCGAACTGGGGCTTCTGACTGC
CAGATTTCTCCACGGTGACGTCGATAATGGCCTCCTTGATCATGGTCATT
TGCTCGCTGGTCAGGGAAGTCCCAGCAGACTCCGCAGCTAAGCCGATTCT
CACGCACTCAACTAAACCCGAGGGGTACGGATTGGCGGTTTGGTTTTCAT
AAAGATCGGGTAGGAGTCCCTTGACTATGGGAAGAGCTTGC
BS05448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-PA | 1095 | CG2217-RA | 171..1095 | 941..17 | 4600 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-RD | 2233 | CG2217-RD | 557..1481 | 941..17 | 4610 | 99.9 | Minus |
| CG2217-RC | 1768 | CG2217-RC | 557..1481 | 941..17 | 4610 | 99.9 | Minus |
| CG2217-RB | 4135 | CG2217-RB | 557..1481 | 941..17 | 4610 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30421491..30422415 | 17..941 | 4610 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:56:05 has no hits.
BS05448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:36 Download gff for
BS05448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-PA | 171..1095 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:13 Download gff for
BS05448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-PA | 171..1095 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:30:33 Download gff for
BS05448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42740-RB | 557..1481 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:54 Download gff for
BS05448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RB | 557..1481 | 17..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:54 Download gff for
BS05448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30421491..30422415 | 17..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:30:33 Download gff for
BS05448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26247213..26248137 | 17..941 | 99 | | Plus |
BS05448.5prime Sequence
802 bp (712 high quality bases) assembled on 2005-12-02
> BS05448.5prime
GAAGTTATCAGTCGACATGAATAGTTTAGAAGTAAATGAGTCTGATGCTG
CTCCAGAAGCATCACCCAACCGAAATCCTTCAGTGGATTCGGGTCCTGGC
TTTGTCAGGCTGAAAACCAGGCAAAAGAAGCTGCTGCGAAAGGCTCTTCA
TGGAGGGCTGACCAGAGAAAAGGCTCTGGAGGTGGTGCAAGCTCTTCCCA
TAGTCAAGGGACTCCTACCCGATCCTTATGAAAACCAAACCGCCAATCCG
TACCCCTCGGGTTTAGTTGAGTGCGTGAGAATCGGCTTAGCTGCGGAGTC
TGCTGGGACTTCCCTGACCAGCGAGCAAATGACCATGATCAAGGAGGCCA
TTATCGACGTCACCGTGGAGAAATCTGGCAGTCAGAAGCCCCAGTTCGAG
GGATGTGTGGCTCGAAGAGGATGGCTCCTTGTGACTTGTTCCAACTCCTC
CACCTCAGAATGGTTCAAACAAAATTTTTGCCACATCCAGTCGAAAGTAA
CCACTAAGCTGAAGCTAATGGATGAGTCTGAACTGCCAAGGAGGAATGTC
GTTCTCGGATATTTTCCAGATAGTCTAACCACCAGCAGCCAGAAGGTCTT
GGAAATCATTCAGGCCCAGAACCCAGTCTCAACGGCGGAATGGAGGGTTA
TGAACAGGTTGACCCACGGTGAGCTACTGCATCTTTCCATGGCAGTTGAC
AATGAATCGCACAAGAAACTGATCGAACTGAATGGAACGATATCCTTTCG
ATTCGGGCGTGTAAAACTTTGTTTGAAAAACTCCCTCGATAGGAAATCCG
TA
BS05448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-PA | 1095 | CG2217-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-RD | 2233 | CG2217-RD | 387..1172 | 17..802 | 3930 | 100 | Plus |
| CG2217-RC | 1768 | CG2217-RC | 387..1172 | 17..802 | 3930 | 100 | Plus |
| CG2217-RB | 4135 | CG2217-RB | 387..1172 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30421800..30422585 | 802..17 | 3930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:56:04 has no hits.
BS05448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:37 Download gff for
BS05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:14 Download gff for
BS05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:44:01 Download gff for
BS05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42740-RB | 387..1171 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:51:11 Download gff for
BS05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RB | 387..1171 | 17..801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:51:11 Download gff for
BS05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30421801..30422585 | 17..801 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:44:01 Download gff for
BS05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26247523..26248307 | 17..801 | 100 | | Minus |
BS05448.complete Sequence
1127 bp (1127 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635117
> BS05448.complete
GAAGTTATCAGTCGACATGAATAGTTTAGAAGTAAATGAGTCTGATGCTG
CTCCAGAAGCATCACCCAACCGAAATCCTTCAGTGGATTCGGGTCCTGGC
TTTGTCAGGCTGAAAACCAGGCAAAAGAAGCTGCTGCGAAAGGCTCTTCA
TGGAGGGCTGACCAGAGAAAAGGCTCTGGAGGTGGTGCAAGCTCTTCCCA
TAGTCAAGGGACTCCTACCCGATCCTTATGAAAACCAAACCGCCAATCCG
TACCCCTCGGGTTTAGTTGAGTGCGTGAGAATCGGCTTAGCTGCGGAGTC
TGCTGGGACTTCCCTGACCAGCGAGCAAATGACCATGATCAAGGAGGCCA
TTATCGACGTCACCGTGGAGAAATCTGGCAGTCAGAAGCCCCAGTTCGAG
GGATGTGTGGCTCGAAGAGGATGGCTCCTTGTGACTTGTTCCAACTCCTC
CACCTCAGAATGGTTCAAACAAAATTTTTGCCACATCCAGTCGAAAGTAA
CCACTAAGCTGAAGCTAATGGATGAGTCTGAACTGCCAAGGAGGAATGTC
GTTCTCGGATATTTTCCAGATAGTCTAACCACCAGCAGCCAGAAGGTCTT
GGAAATCATTCAGGCCCAGAACCCAGTCTCAACGGCGGAATGGAGGGTTA
TGAACAGGTTGACCCACGGTGAGCTACTGCATCTTTCCATGGCAGTTGAC
AATGAATCGCACAAGAAACTGATCGAACTGAATGGAACGATATCCTTTCG
ATTCGGGCGTGTAAAACTTTGTTTGAAAAACTCCCTCGATAGGAAATCCG
TACTAAATGGTAGAAAAGAAACGTCACCAAATAGAAAATCCCTGGACAAG
GCTGCTGTAAGTCGGGAAATTGTGCCTGCTCCGCAGGAACCAGTGATCAC
AAATGATAGTCCGTGGAACCAATCCCATAATCCTTGGCTCAGTCATAGTA
ATCCTATGATGCAGTGGAATCAACAACAGATGCTCAGGTATGATCCTTAT
AGTCCAAGGGAACTTCCGCCGAACTTTTTGCATGCCAGCTATTCGGGATT
GGGCTATGGGAATGAAGGAGACAGGAGGCTGAGACCACGAACTTGGCCAG
GAAACTGCTGAAAGCTTTCTAGACCAT
BS05448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-RD | 1095 | CG2217-PD | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG2217-RC | 1095 | CG2217-PC | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG2217-RB | 1095 | CG2217-PB | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-RD | 2233 | CG2217-RD | 387..1481 | 17..1111 | 5475 | 100 | Plus |
| CG2217-RC | 1768 | CG2217-RC | 387..1481 | 17..1111 | 5475 | 100 | Plus |
| CG2217-RB | 4135 | CG2217-RB | 387..1481 | 17..1111 | 5475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30421491..30422585 | 1111..17 | 5475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:27:30 has no hits.
BS05448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:23 Download gff for
BS05448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RA | 1..1095 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:20 Download gff for
BS05448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RA | 387..1481 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:45:29 Download gff for
BS05448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42740-RB | 387..1480 | 17..1110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:23 Download gff for
BS05448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RA | 387..1481 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:48 Download gff for
BS05448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2217-RB | 387..1480 | 17..1110 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:48 Download gff for
BS05448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30421492..30422585 | 17..1110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:45:29 Download gff for
BS05448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26247214..26248307 | 17..1110 | 100 | | Minus |
BS05448.pep Sequence
Translation from 16 to 1110
> BS05448.pep
MNSLEVNESDAAPEASPNRNPSVDSGPGFVRLKTRQKKLLRKALHGGLTR
EKALEVVQALPIVKGLLPDPYENQTANPYPSGLVECVRIGLAAESAGTSL
TSEQMTMIKEAIIDVTVEKSGSQKPQFEGCVARRGWLLVTCSNSSTSEWF
KQNFCHIQSKVTTKLKLMDESELPRRNVVLGYFPDSLTTSSQKVLEIIQA
QNPVSTAEWRVMNRLTHGELLHLSMAVDNESHKKLIELNGTISFRFGRVK
LCLKNSLDRKSVLNGRKETSPNRKSLDKAAVSREIVPAPQEPVITNDSPW
NQSHNPWLSHSNPMMQWNQQQMLRYDPYSPRELPPNFLHASYSGLGYGNE
GDRRLRPRTWPGNC*
BS05448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2217-PD | 364 | CG2217-PD | 1..364 | 1..364 | 1912 | 100 | Plus |
| CG2217-PC | 364 | CG2217-PC | 1..364 | 1..364 | 1912 | 100 | Plus |
| CG2217-PB | 364 | CG2217-PB | 1..364 | 1..364 | 1912 | 100 | Plus |
| CG2217-PA | 364 | CG2217-PA | 1..364 | 1..364 | 1912 | 100 | Plus |
