Clone Sequence Records
BS05449.3prime Sequence
805 bp (754 high quality bases) assembled on 2005-12-02
> BS05449.3prime
ATGGTCTAGAAAGCTTTTAAAGAATTCCCGTTTGAGAGCGTTCTAGCAGA
TGATTTAGCGACACCGGCTTCCAGTTGCTGAAGCTGCCATCGCTGACCAT
GCAGACGTGACGATCGATGTAGCAAAACAGCTTTCCCACACGATAAATCT
GTTTGCCCATCTCCCGTCGCCCTGGCAGAGGAGCGAAGATGATTCCCAAG
TCGGCGCATTGCTGCGATACCAACTCTTTGAACTCCAGCTGAGCGGGCGG
ATGAATCAGGTCCATCATTATGACTGGAGCCGGAGGAACTGGAGGCGGGG
GCGTGGGCGTCACCGTGGGCTGCAGCAGGGTATCGCTGGCTCTGTGCATA
ATTTCCAGTGCTCGCCGCAGATGCTCTTTAACGCTGGGCTCGCGCAGAAG
CGGTTCGCTCAACATGCTCTTCCAGCCGGTGTACCATCGCGAGATCTCCG
CGTAGTCCGGCGACTGATTCAGCCAGACGACGAGCACTTGCATCCAGCGC
GGGAAGAAGTGTCTGTCCAGTAGTTGGGCCATGTACATGGGATCGATGAG
CTCGTGCCACTCCCATACCTGCTGCCACAGCTCCAGGTCCTGGTGCATTG
GATTGATGATGAGCTCGCCTAGAGTCGCCTGCAGTTTGGGCACTATGTAC
CGCTGCAGGAACTCTTGCATCTCTTCCTCGGGGAAGGCCTTCTGCCAGGG
CGTAAGCATGGCTCTGGCTGATCGGTCATGCGGTGACCAGGCGCGCAATG
CTATACCCCATTTGCTGCGGATCTGAGGATAGACGGCCTCCTCCAGCTTG
CTGCC
BS05449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7238-PA | 2520 | sip1-RA | 1732..2520 | 805..17 | 3920 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip1-RB | 2780 | CG7238-RB | 1817..2606 | 805..16 | 3935 | 99.9 | Minus |
| sip1-RA | 2627 | CG7238-RA | 1817..2606 | 805..16 | 3935 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5722918..5723574 | 805..149 | 3270 | 99.8 | Minus |
| 2L | 23513712 | 2L | 5723634..5723770 | 152..16 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:06:08 has no hits.
BS05449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:38 Download gff for
BS05449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-PA | 1732..2520 | 17..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:15 Download gff for
BS05449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7238-PA | 1732..2520 | 17..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:49:31 Download gff for
BS05449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-RA | 1817..2606 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:56:45 Download gff for
BS05449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-RA | 1817..2606 | 16..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:56:45 Download gff for
BS05449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5723638..5723770 | 16..148 | 100 | | Minus |
| 2L | 5722918..5723574 | 149..805 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:49:31 Download gff for
BS05449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5722918..5723574 | 149..805 | 99 | -> | Minus |
| arm_2L | 5723638..5723770 | 16..148 | 100 | | Minus |
BS05449.5prime Sequence
619 bp (618 high quality bases) assembled on 2005-12-02
> BS05449.5prime
GAAGTTATCAGTCGACATGTCGGACAACGATTACGAGCGTTTCGAGATAA
CGGACTACGATCTGGACAATGAGTTCAACATCAATCGGCCCCGAGGCCGC
CAGAGCAGGCACCAACAGATCTACGGTATTTGGGCGGATGACAGCGAGGA
GGAGAGTGGTGGCGAGGGCGGAACTAAGAGAAGGGGGCGCGCCGCCCGTA
AACCCAAAGACTACACCATGCCCGTCAATTTTGTGGCCGGCGGCATTCAG
CAGGCGGGCAAAAAGAAGAAGAAGGCGCTCCAAGCCGATGATGAGAAAGG
ATCGCAAAAAGAGGGAGCAGAGGCTGACCAGGGCGAGGAGAGCGACGATT
CCGCCGCCAGCGGACGGCCAGCCTTCGGCCAGAACGATCCGGGCAGCTCC
AACAGCTCATCAGAAGAGGAGAGGCCAACGCTGAGCCGGAAACAGCCAAG
CACCACATTTCAGCATCGCTCCCACATCGCCAGCGAGCGCAACGTGGGCG
CCTGGGAGCAGCATACACGCGGCATTGGAGCTAAGCTACTCCTTCAAATG
GGCTATGAGCCTGGCAAGGGTTTGGGCAAAGATCTGCAGGGCATTTCGCA
TCCTGTGCAAGCCCATGTC
BS05449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7238-PA | 2520 | sip1-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip1-RB | 2780 | CG7238-RB | 86..688 | 17..619 | 3015 | 100 | Plus |
| sip1-RA | 2627 | CG7238-RA | 86..688 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5721295..5721789 | 125..619 | 2475 | 100 | Plus |
| 2L | 23513712 | 2L | 5721136..5721248 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7468..7506 | 251..287 | 109 | 79.5 | Plus |
BS05449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:39 Download gff for
BS05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:16 Download gff for
BS05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7238-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:55 Download gff for
BS05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-RA | 82..688 | 9..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:17 Download gff for
BS05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-RA | 82..688 | 9..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:17 Download gff for
BS05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5721132..5721244 | 9..125 | 96 | -> | Plus |
| 2L | 5721296..5721789 | 126..619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:55 Download gff for
BS05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5721132..5721244 | 9..125 | 96 | -> | Plus |
| arm_2L | 5721296..5721789 | 126..619 | 100 | | Plus |
BS05449.complete Sequence
2552 bp assembled on 2008-08-14
GenBank Submission: FJ635118
> BS05449.complete
GAAGTTATCAGTCGACATGTCGGACAACGATTACGAGCGTTTCGAGATAA
CGGACTACGATCTGGACAATGAGTTCAACATCAATCGGCCCCGAGGCCGC
CAGAGCAGGCACCAACAGATCTACGGTATTTGGGCGGATGACAGCGAGGA
GGAGAGTGGTGGCGAGGGCGGAACTAAGAGAAGGGGGCGCGCCGCCCGTA
AACCCAAAGACTACACCATGCCCGTCAATTTTGTGGCCGGCGGCATTCAG
CAGGCGGGCAAAAAGAAGAAGAAGGCGCTCCAAGCCGATGATGAGAAAGG
ATCGCAAAAAGAGGGAGCAGAGGCTGACCAGGGCGAGGAGAGCGACGATT
CCGCCGCCAGCGGACGGCCAGCCTTCGGCCAGAACGATCCGGGCAGCTCC
AACAGCTCATCAGAAGAGGAGAGGCCAACGCTGAGCCGGAAACAGCCAAG
CACCACATTTCAGCATCGCTCCCACATCGCCAGCGAGCGCAACGTGGGCG
CCTGGGAGCAGCATACACGCGGCATTGGAGCTAAGCTACTCCTTCAAATG
GGCTATGAGCCTGGCAAGGGTTTGGGCAAAGATCTGCAGGGCATTTCGCA
TCCTGTGCAAGCCCATGTCCGCAAGGGCAGAGGTGCTATCGGCGCCTATG
GACCCGAAACTGCGGCAAGCATCGGAGGAAAGACGAACAAGAGCATCAAA
GTGGATGAGGACGTGCGCGAGGCGAAAGAGTTCAAAGACCAGCTGAACAA
GTGGCGAAAGGGCTCAGCCGGTGGCGCCGAACCAATGGAGCGGCAGGGTA
AGCGCTACTACTACAAGTCCGTGGAGGAGGTGATTGCCAAGGGTCACACG
TCCGGCCACCTACTGTCGGAGAAGCTAAGCAAGAAACTGGGCAATGTGCG
GGTGATCGATATGACAGGCCCAGAGAAACGAGTGCTGAGTGGCTATCATG
CCTTGGGACAGGCAAAAATTACGCCAGAGGAGACGCTCTACGACACGGAG
GCGACGGAAAAGGGATCCGCTCCCGCCTGCGTTTTTGCCATGCCCGAGCT
GACGCACAACCTCCAGCTCTTGGTTAGCCAGTGCGAGCAGCAGATCATCG
CCATCGACAACCAGGAACGCGAGTGTTCCAGCCAGCAGGCAGCGCTGGAA
AGCGAGCACCGGAAACTGGAGGAGATAGTCCAGCTAGAACGAAACCACAT
ACGCACGCTGGAGGAATCGTTGGAGCGCGTGGAGCGGTTAATCGATAATC
CAGACTTGAGTTTACCTCAGGCTGAACGACTCTTTCGGGAGCTGCTCGTG
GACTACGCTGCCGAATTCCATGAGTTCGGACTTGCAGATCTGGCAGCCGG
TGTAATAGCGCCGCTCCTGAAGCGAGAACTAGTTCAGTGGCAGCCACTGG
AAAACCCAACGGAACCGCTGCCACTCATCAAGAAATGGCGCGGCATGCTC
CAGCAAGGAGATGCAGCAGAGCAGCAGCCCCGCAACGTCTTCGATCCGTA
CTCCTCGCTCATCTGGGCCGGCGTGATGCCTTCGTTTCGGTCCAGCGCTG
CCGCATGGCAGCCGAAGGAGCATCCGCCAATGGCTTCACTCCTAGATGCC
TGGGCACCCCTGCTACCTAGCTGGGTCTTGGATTCGGTTCTCGAGCAACT
GGTTCTGCCACGACTGGTGGCTGGTGTCCAGGAGTGGGATCCGCTCACCG
ACACCGTTCCGATCGACAGTTGGGTGCTGCCGTGGCATGCCATCTTGGGC
AGCAAGCTGGAGGAGGCCGTCTATCCTCAGATCCGCAGCAAATTGGGTAT
AGCATTGCGCGCCTGGTCACCGCATGACCGATCAGCCAGAGCCATGCTTA
CGCCCTGGCAGAAGGCCTTCCCCGAGGAAGAGATGCAAGAGTTCCTGCAG
CGGTACATAGTGCCCAAACTGCAGGCGACTCTAGGCGAGCTCATCATCAA
TCCAATGCACCAGGACCTGGAGCTGTGGCAGCAGGTATGGGAGTGGCACG
AGCTCATCGATCCCATGTACATGGCCCAACTACTGGACAGACACTTCTTC
CCGCGCTGGATGCAAGTGCTCGTCGTCTGGCTGAATCAGTCGCCGGACTA
CGCGGAGATCTCGCGATGGTACACCGGCTGGAAGAGCATGTTGAGCGAAC
CGCTTCTGCGCGAGCCCAGCGTTAAAGAGCATCTGCGGCGAGCACTGGAA
ATTATGCACAGAGCCAGCGATACCCTGCTGCAGCCCACGGTGACGCCCAC
GCCCCCGCCTCCAGTTCCTCCGGCTCCAGTCATAATGATGGACCTGATTC
ATCCGCCCGCTCAGCTGGAGTTCAAAGAGTTGGTATCGCAGCAATGCGCC
GACTTGGGAATCATCTTCGCTCCTCTGCCAGGGCGACGGGAGATGGGCAA
ACAGATTTATCGTGTGGGAAAGCTGTTTTGCTACATCGATCGTCACGTCT
GCATGGTCAGCGATGGCAGCTTCAGCAACTGGAAGCCGGTGTCGCTAAAT
CATCTGCTAGAACGCTCTCAAACGGGAATTCTTTAAAAGCTTTCTAGACC
AT
BS05449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip1-RB | 2520 | CG7238-PB | 1..2520 | 17..2536 | 12600 | 100 | Plus |
| sip1-RA | 2520 | CG7238-PA | 1..2520 | 17..2536 | 12600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip1-RB | 2780 | CG7238-RB | 86..2606 | 17..2537 | 12605 | 100 | Plus |
| sip1-RA | 2627 | CG7238-RA | 86..2606 | 17..2537 | 12605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5721295..5723574 | 125..2404 | 11400 | 100 | Plus |
| 2L | 23513712 | 2L | 5723634..5723770 | 2401..2537 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 5721136..5721248 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:57:35 has no hits.
BS05449.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:15 Download gff for
BS05449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-RA | 74..2598 | 9..2537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:01 Download gff for
BS05449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-RA | 86..2603 | 17..2534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:01 Download gff for
BS05449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-RA | 78..2595 | 17..2534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:43 Download gff for
BS05449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip1-RA | 86..2603 | 17..2534 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:43 Download gff for
BS05449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5723638..5723767 | 2405..2534 | 100 | | Plus |
| 2L | 5721136..5721244 | 17..125 | 100 | -> | Plus |
| 2L | 5721296..5723574 | 126..2404 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:01 Download gff for
BS05449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5721136..5721244 | 17..125 | 100 | -> | Plus |
| arm_2L | 5721296..5723574 | 126..2404 | 100 | -> | Plus |
| arm_2L | 5723638..5723767 | 2405..2534 | 100 | | Plus |
BS05449.pep Sequence
Translation from 16 to 2535
> BS05449.pep
MSDNDYERFEITDYDLDNEFNINRPRGRQSRHQQIYGIWADDSEEESGGE
GGTKRRGRAARKPKDYTMPVNFVAGGIQQAGKKKKKALQADDEKGSQKEG
AEADQGEESDDSAASGRPAFGQNDPGSSNSSSEEERPTLSRKQPSTTFQH
RSHIASERNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISHPVQAH
VRKGRGAIGAYGPETAASIGGKTNKSIKVDEDVREAKEFKDQLNKWRKGS
AGGAEPMERQGKRYYYKSVEEVIAKGHTSGHLLSEKLSKKLGNVRVIDMT
GPEKRVLSGYHALGQAKITPEETLYDTEATEKGSAPACVFAMPELTHNLQ
LLVSQCEQQIIAIDNQERECSSQQAALESEHRKLEEIVQLERNHIRTLEE
SLERVERLIDNPDLSLPQAERLFRELLVDYAAEFHEFGLADLAAGVIAPL
LKRELVQWQPLENPTEPLPLIKKWRGMLQQGDAAEQQPRNVFDPYSSLIW
AGVMPSFRSSAAAWQPKEHPPMASLLDAWAPLLPSWVLDSVLEQLVLPRL
VAGVQEWDPLTDTVPIDSWVLPWHAILGSKLEEAVYPQIRSKLGIALRAW
SPHDRSARAMLTPWQKAFPEEEMQEFLQRYIVPKLQATLGELIINPMHQD
LELWQQVWEWHELIDPMYMAQLLDRHFFPRWMQVLVVWLNQSPDYAEISR
WYTGWKSMLSEPLLREPSVKEHLRRALEIMHRASDTLLQPTVTPTPPPPV
PPAPVIMMDLIHPPAQLEFKELVSQQCADLGIIFAPLPGRREMGKQIYRV
GKLFCYIDRHVCMVSDGSFSNWKPVSLNHLLERSQTGIL*
BS05449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip1-PB | 839 | CG7238-PB | 1..839 | 1..839 | 4429 | 100 | Plus |
| sip1-PA | 839 | CG7238-PA | 1..839 | 1..839 | 4429 | 100 | Plus |
