Clone Sequence Records
BS05450.3prime Sequence
829 bp (818 high quality bases) assembled on 2005-12-02
> BS05450.3prime
ATGGTCTAGAAAGCTTCTACTCGTTGTCATCCAATCGCATGGCTTGCTGT
ATCCTCTTCAGTTCCTTTGCCCGCTGGTCACGTTCCTTTTTCTCCTTCAG
CTGCTTGCGCCGTTTGCGCATCTCGATAAACTTCTTCTGGTCCTCGGGAC
TCAGCGCCGAGATTCGAGTCACATACTCACGCCTCTTCTCCTCCAACTTA
GCCTTGACTTCCTCGTCGGCCTTCTTTTTGGCCGCCTCCACGCGTCGCTT
CTGCTCGGCGGCCTTGGCCTCTTCGGCAGCCCGTTCCTCGGCCTCCTTGG
CTTTACGCGCCTCTTCTGCCTGTCGCATTTCATCTTCTAGTCGCTGCTTA
ACTTTGCGTTCCTCTTCAGCCACTTCCTTGCGCAGCATTTCCTCCTCCTC
AGCTAGTTTTTTCTCCGCAGCCTCGCGGAGTGCTATTTCCCGCTCGCGCT
GGAGCTTCTGCTCCTCGCGCCGCTGGTTCTCCTCGTGCAGGCGCTTTAGT
TCCTTCTCCTCGAAGCGGCGAGCCTCCTCAAGCCTCTCCAGTTCCAGGCG
CTTTTCCTCCTCCTCCTGCTCGCGTCGAATCTGCTCCTGCCGCTCGTCCT
CCTGTTTCTTAAGCTGCTCTTGCAGCTTCAGCTCCTCAAGTCGCTTGGCT
TCATGGGCCTCGGCAAGTTGCTTCTCCCGCTCGGTATTGGCCAGCCTTAT
GCGCTCGGCATACAGATCATGCAGTCGCTTCTCTTCAGCCAGACGCTTGG
CATGGTTTTGGCGATCCTGTTCCTCCTGTTCTTCGCGCTGTTTGCGGCGC
TGCTCTTCGCGCTCTCGTCGCTGTTGTGC
BS05450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6014-PA | 2403 | CG6014-RA | 1591..2403 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rgn-RD | 3918 | CG6014-RD | 2314..3129 | 829..14 | 4080 | 100 | Minus |
| rgn-RC | 3991 | CG6014-RC | 2387..3202 | 829..14 | 4080 | 100 | Minus |
| rgn-RA | 4322 | CG6014-RA | 2363..3178 | 829..14 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21422457..21423272 | 829..14 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:05:56 has no hits.
BS05450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:40 Download gff for
BS05450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6014-PA | 1591..2403 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:18 Download gff for
BS05450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6014-PA | 1591..2403 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:49:29 Download gff for
BS05450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rgn-RA | 2363..3183 | 6..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:56:43 Download gff for
BS05450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rgn-RA | 2363..3183 | 6..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:56:43 Download gff for
BS05450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21422457..21423277 | 6..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:49:29 Download gff for
BS05450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21415557..21416377 | 6..829 | 99 | | Minus |
BS05450.5prime Sequence
815 bp (752 high quality bases) assembled on 2005-12-02
> BS05450.5prime
GAAGTTATCAGTCGACATGTGTGGCAGCCATAAAATGTGGTGCTGTCAAG
TATTTATCTTAGCTTTATTTGCTCACACAATTGCGGTGGAGTTCCACGGA
AGTGCAGCTCGCGCCGAAATCAACTTCGAAGGCCCCTCGCCTGCTCACAG
TCAGGATACAGCAGCTCCAACTTCCAGGCCAAAGCGCCGTGTATACGCCT
TGTGTCCACCGAAATTCCATCGCGTGGGCACCGATTGCTACTCGCTGGTC
GATCAGCGCAGCAGTTGGCTGGAGGCGCACTTCTTCTGCAAGGACAAAAA
CGCCAATCTTACAGAGCCGGGTAAACACGCCGACCGCAAGCTGAGACTTT
TCCTTCAGAAACAGGATGCCCTATCAGGCGAAAATGATCCTATCTGGCTA
GGAGCCACCTATGACCACCACAACAACCGATGGCAGTGGAGCATGAGTGG
TCGCAATCTGTCCACCGACTCCTTCAGCCGCACTGATTCCGCCCAACCGC
TTGATAATAACTGTGCCATCTACGATCCAAGCCTCAAGTACCGCTGGTCG
GCGCGGCCCTGCTCGGATAAGCTGCGCTTCATATGTCAGCACAAGATGCC
AAAGGTGAGCGGCCCCAATCGCTACAAGATCTACAACCGCTGGAACGCCA
CCTATCCGAACGAGCAGGCCAACGAGGTGGTCCTGGAGATTCTTGAACCG
CGTGAAAACGATCGCAGGTACCACAGGCGTGTCAAGGCCGAGGACAGTGA
CGAAGAGATGATTATTCCCGACCGTCGACGCAATAACAATCGTCGCAACA
ACCACAGAAACCGTC
BS05450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6014-PA | 2403 | CG6014-RA | 1..799 | 17..815 | 3995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rgn-RD | 3918 | CG6014-RD | 724..1522 | 17..815 | 3995 | 100 | Plus |
| rgn-RA | 4322 | CG6014-RA | 773..1571 | 17..815 | 3995 | 100 | Plus |
| rgn-RC | 3991 | CG6014-RC | 773..1595 | 17..815 | 3745 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21419859..21420170 | 69..380 | 1560 | 100 | Plus |
| 3L | 28110227 | 3L | 21420465..21420692 | 493..720 | 1140 | 100 | Plus |
| 3L | 28110227 | 3L | 21420250..21420362 | 380..492 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 21421566..21421665 | 716..815 | 500 | 100 | Plus |
| 3L | 28110227 | 3L | 21419746..21419797 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:42:41 has no hits.
BS05450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:42 Download gff for
BS05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6014-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:19 Download gff for
BS05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6014-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:18:40 Download gff for
BS05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rgn-RA | 769..1571 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:59 Download gff for
BS05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rgn-RA | 769..1571 | 9..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:59 Download gff for
BS05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21419742..21419797 | 9..68 | 93 | -> | Plus |
| 3L | 21419859..21420170 | 69..380 | 100 | -> | Plus |
| 3L | 21420251..21420362 | 381..492 | 100 | -> | Plus |
| 3L | 21420465..21420689 | 493..717 | 100 | -> | Plus |
| 3L | 21421568..21421665 | 718..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:18:40 Download gff for
BS05450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21414668..21414765 | 718..815 | 100 | | Plus |
| arm_3L | 21412842..21412897 | 9..68 | 93 | -> | Plus |
| arm_3L | 21412959..21413270 | 69..380 | 100 | -> | Plus |
| arm_3L | 21413351..21413462 | 381..492 | 100 | -> | Plus |
| arm_3L | 21413565..21413789 | 493..717 | 100 | -> | Plus |
BS05450.complete Sequence
2435 bp assembled on 2008-08-14
GenBank Submission: FJ635119
> BS05450.complete
GAAGTTATCAGTCGACATGTGTGGCAGCCATAAAATGTGGTGCTGTCAAG
TATTTATCTTAGCTTTATTTGCTCACACAATTGCGGTGGAGTTCCACGGA
AGTGCAGCTCGCGCCGAAATCAACTTCGAAGGCCCCTCGCCTGCTCACAG
TCAGGATACAGCAGCTCCAACTTCCAGGCCAAAGCGCCGTGTATACGCCT
TGTGTCCACCGAAATTCCATCGCGTGGGCACCGATTGCTACTCGCTGGTC
GATCAGCGCAGCAGTTGGCTGGAGGCGCACTTCTTCTGCAAGGACAAAAA
CGCCAATCTTACAGAGCCGGGTAAACACGCCGACCGCAAGCTGAGACTTT
TCCTTCAGAAACAGGATGCCCTATCAGGCGAAAATGATCCTATCTGGCTA
GGAGCCACCTATGACCACCACAACAACCGATGGCAGTGGAGCATGAGTGG
TCGCAATCTGTCCACCGACTCCTTCAGCCGCACTGATTCCGCCCAACCGC
TTGATAATAACTGTGCCATCTACGATCCAAGCCTCAAGTACCGCTGGTCG
GCGCGGCCCTGCTCGGATAAGCTGCGCTTCATATGTCAGCACAAGATGCC
AAAGGTGAGCGGCCCCAATCGCTACAAGATCTACAACCGCTGGAACGCCA
CCTATCCGAACGAGCAGGCCAACGAGGTGGTCCTGGAGATTCTTGAACCG
CGTGAAAACGATCGCAGGTACCACAGGCGTGTCAAGGCCGAGGACAGTGA
CGAAGAGATGATTATTCCCGACCGTCGACGCAATAACAATCGTCGCAACA
ACCACAGAAACCGTCAGATCAAGAATCAGAATCAACATCCCAATGATGTG
AACTACCAGCCAGCACAGCAACGCCAAAGGAATCGTCCTCGTACTTCTAC
TGTTGCGCCAACTACTACGCAATCGGTTAGCCAGTCTAATGATGTCCTGG
CTCCCTCACCCACGCCTCAGCAGATGACTCAGTACGATCGTAAATTGCAA
CGTCAACGGGAAAGGGAACGTCGCCGACAGCTGCGTCGGCAGGAACGCCA
GAAGTTGGCTAGGGAGCAAAAGCGCGAAAGGCAACGTCGCCTTAAGGAGG
AACGCCAGCGATTGCAGCGGGAGGAACAGCAGCGCAGGCAGCGATTGCAT
CACGATGAACCCAAACCCCAAGTGAACCCCCAAGTGAAGCCCCAAGTGAT
AGATGAACTCCGTCAGAGATCTGGTGAGGATTTGGATAAGAATCAAACGG
ACGAGCACGAACAGAAACTAAGAAATGAACAGGAAAAAAAACTAAGGGAA
GAACAGCAAAAGCAACGCGATGAACAGGAACAAAAGGACAGAGAGGAGCA
GGATAGACTTAAACAAGAGGAAGAGCAGGCCAGAACGCATCAGAAAGAGC
TCAAGGAAAACCAGGAACAGCAACTTCGCGAACTTAAAGCCAAGCAGGAG
CGAGAAAAGCAGGAACGGGATTACCAGCAGCAAAAGCGTGAGCACGAGCT
CGAGCTCCTGAAGCAACGGCAGGCTGAAGCAGACCGCCAGCACGCAGCGG
ACGAGGAGGCAGAGAAGCTACGACTGGAGCGCATCCAAAAACAACGCGAA
CTGGAGGCACAACAGCGACGAGAGCGCGAAGAGCAGCGCCGCAAACAGCG
CGAAGAACAGGAGGAACAGGATCGCCAAAACCATGCCAAGCGTCTGGCTG
AAGAGAAGCGACTGCATGATCTGTATGCCGAGCGCATAAGGCTGGCCAAT
ACCGAGCGGGAGAAGCAACTTGCCGAGGCCCATGAAGCCAAGCGACTTGA
GGAGCTGAAGCTGCAAGAGCAGCTTAAGAAACAGGAGGACGAGCGGCAGG
AGCAGATTCGACGCGAGCAGGAGGAGGAGGAAAAGCGCCTGGAACTGGAG
AGGCTTGAGGAGGCTCGCCGCTTCGAGGAGAAGGAACTAAAGCGCCTGCA
CGAGGAGAACCAGCGGCGCGAGGAGCAGAAGCTCCAGCGCGAGCGGGAAA
TAGCACTCCGCGAGGCTGCGGAGAAAAAACTAGCTGAGGAGGAGGAAATG
CTGCGCAAGGAAGTGGCTGAAGAGGAACGCAAAGTTAAGCAGCGACTAGA
AGATGAAATGCGACAGGCAGAAGAGGCGCGTAAAGCCAAGGAGGCCGAGG
AACGGGCTGCCGAAGAGGCCAAGGCCGCCGAGCAGAAGCGACGCGTGGAG
GCGGCCAAAAAGAAGGCCGACGAGGAAGTCAAGGCTAAGTTGGAGGAGAA
GAGGCGTGAGTATGTGACTCGAATCTCGGCGCTGAGTCCCGAGGACCAGA
AGAAGTTTATCGAGATGCGCAAACGGCGCAAGCAGCTGAAGGAGAAAAAG
GAACGTGACCAGCGGGCAAAGGAACTGAAGAGGATACAGCAAGCCATGCG
ATTGGATGACAACGAGTAGAAGCTTTCTAGACCAT
BS05450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rgn-RD | 2403 | CG6014-PD | 1..2403 | 17..2419 | 12015 | 100 | Plus |
| rgn-RA | 2403 | CG6014-PA | 1..2403 | 17..2419 | 12015 | 100 | Plus |
| rgn-RC | 2427 | CG6014-PC | 501..2427 | 493..2419 | 9635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rgn-RD | 3918 | CG6014-RD | 724..3129 | 17..2422 | 12030 | 100 | Plus |
| rgn-RA | 4322 | CG6014-RA | 773..3178 | 17..2422 | 12030 | 100 | Plus |
| rgn-RC | 3991 | CG6014-RC | 1273..3202 | 493..2422 | 9650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21421566..21423272 | 716..2422 | 8535 | 100 | Plus |
| 3L | 28110227 | 3L | 21419859..21420170 | 69..380 | 1560 | 100 | Plus |
| 3L | 28110227 | 3L | 21420465..21420692 | 493..720 | 1140 | 100 | Plus |
| 3L | 28110227 | 3L | 21420250..21420362 | 380..492 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 21419746..21419797 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2999 | 998..1648 | 325 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2591..2855 | 1403..1678 | 174 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6921 | 1473..1683 | 170 | 58.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1020..1173 | 1433..1590 | 140 | 58.8 | Plus |
BS05450.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:04 Download gff for
BS05450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6014-RA | 746..3160 | 9..2430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:35 Download gff for
BS05450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rgn-RA | 773..3175 | 17..2419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:59 Download gff for
BS05450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6014-RA | 750..3152 | 17..2419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:24 Download gff for
BS05450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rgn-RA | 773..3175 | 17..2419 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:24 Download gff for
BS05450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21419746..21419797 | 17..68 | 100 | -> | Plus |
| 3L | 21419859..21420170 | 69..380 | 100 | -> | Plus |
| 3L | 21420251..21420362 | 381..492 | 100 | -> | Plus |
| 3L | 21420465..21420689 | 493..717 | 100 | -> | Plus |
| 3L | 21421568..21423269 | 718..2419 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:35 Download gff for
BS05450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21413565..21413789 | 493..717 | 100 | -> | Plus |
| arm_3L | 21412846..21412897 | 17..68 | 100 | -> | Plus |
| arm_3L | 21412959..21413270 | 69..380 | 100 | -> | Plus |
| arm_3L | 21413351..21413462 | 381..492 | 100 | -> | Plus |
| arm_3L | 21414668..21416369 | 718..2419 | 100 | | Plus |
BS05450.pep Sequence
Translation from 16 to 2418
> BS05450.pep
MCGSHKMWCCQVFILALFAHTIAVEFHGSAARAEINFEGPSPAHSQDTAA
PTSRPKRRVYALCPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTE
PGKHADRKLRLFLQKQDALSGENDPIWLGATYDHHNNRWQWSMSGRNLST
DSFSRTDSAQPLDNNCAIYDPSLKYRWSARPCSDKLRFICQHKMPKVSGP
NRYKIYNRWNATYPNEQANEVVLEILEPRENDRRYHRRVKAEDSDEEMII
PDRRRNNNRRNNHRNRQIKNQNQHPNDVNYQPAQQRQRNRPRTSTVAPTT
TQSVSQSNDVLAPSPTPQQMTQYDRKLQRQRERERRRQLRRQERQKLARE
QKRERQRRLKEERQRLQREEQQRRQRLHHDEPKPQVNPQVKPQVIDELRQ
RSGEDLDKNQTDEHEQKLRNEQEKKLREEQQKQRDEQEQKDREEQDRLKQ
EEEQARTHQKELKENQEQQLRELKAKQEREKQERDYQQQKREHELELLKQ
RQAEADRQHAADEEAEKLRLERIQKQRELEAQQRREREEQRRKQREEQEE
QDRQNHAKRLAEEKRLHDLYAERIRLANTEREKQLAEAHEAKRLEELKLQ
EQLKKQEDERQEQIRREQEEEEKRLELERLEEARRFEEKELKRLHEENQR
REEQKLQREREIALREAAEKKLAEEEEMLRKEVAEEERKVKQRLEDEMRQ
AEEARKAKEAEERAAEEAKAAEQKRRVEAAKKKADEEVKAKLEEKRREYV
TRISALSPEDQKKFIEMRKRRKQLKEKKERDQRAKELKRIQQAMRLDDNE
*
BS05450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rgn-PD | 800 | CG6014-PD | 1..800 | 1..800 | 4136 | 100 | Plus |
| rgn-PA | 800 | CG6014-PA | 1..800 | 1..800 | 4136 | 100 | Plus |
| rgn-PC | 808 | CG6014-PC | 1..808 | 1..800 | 4117 | 99 | Plus |
| rgn-PB | 808 | CG6014-PB | 1..808 | 1..800 | 4117 | 99 | Plus |
| CG2839-PA | 826 | CG2839-PA | 302..747 | 325..795 | 603 | 32.1 | Plus |
