Clone BS05453 Report

Search the DGRC for BS05453

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG17841-RA
Protein status:BS05453.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05453.3prime Sequence

862 bp (780 high quality bases) assembled on 2005-12-02

> BS05453.3prime
ATGGTCTAGAAAGCTTCTAATTTTTGCCATTTATAAGGGCGGTGGGGGTT
GGTGTGGGCACGGCCGCCGACTTTGCCGATAGAACTGCGTTGGGCGGCCG
TCTCTTTTGCGGTAGAAAGACCTTGAGAGCACCCAAAACCATCAGATAGA
ACCAGTAGAGCTGTGGCAAGAACAGTATAGCGATGCTGATGAGGCATCCT
CGCGGCAGGCCCCACATGGCCGACCACAGGGATGCAGCCTCAATGGCCAG
GCTGTAGCGCCACATCACGTATGGCCACATGCAGACGCGGCACACGAAGA
AGGTGGCCAGCATCAGCAGACCGTTGGCGATGTACACACGTGAATCCTTG
AGGCGCATGGTGCTCAGGATGCTGCGCAACGAGACGAACGGCGTGGAGAA
CTCCATCATGAACATGTAGCTGTAGATGCAGTGACCGCCACCGCGAATGT
ACGTCACCACCAGCAATCCAAATGTTCCGATGAAGACATGGTGTATCATC
ATGACCGGGTGCGTGACCACGTACTTGAGAAAGTCCCATCTGCCGTCCTT
GGGTATCTGGACACAGGCTCCATCGTAGTCGCAGATCTCGTGCAGATTCG
TTGGAGTGCTGCCGTTGTTGTTGCCGCTGGCCGACTTGCCGTTGACCTTG
CCATTGGCGTGGCCATTGCTCACCACCGCCCCTTGACCCTTGGTAATGCG
CAGCAGGTGCAGCTTGTCGGCGATCTTCTGGGTGTGCACCTTGTACATCG
ACCAGATGTCGTACATAAAGTAAGCAGTGCCGAACCCACCGTACGCCTCC
AATCAGAAGTGGGATGCATATACAAAGGATTTGGTGCACGTCGACTTGCA
GACGATGAGTCC

BS05453.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-PA 1290 CG17841-RA 506..1290 801..17 3900 99.8 Minus
CG17841-PA 1290 CG17841-RA 445..502 862..805 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 2488 CG17841-RA 749..1594 862..17 4170 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10381699..10382109 862..452 1995 99 Minus
X 23542271 X 10382180..10382512 452..120 1665 100 Minus
X 23542271 X 10382580..10382686 123..17 535 100 Minus
Blast to na_te.dros performed 2015-02-12 01:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2431 670..610 116 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2838 670..600 114 63.9 Minus

BS05453.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:46 Download gff for BS05453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-PA 445..1290 17..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:25 Download gff for BS05453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-PA 445..1290 17..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:09 Download gff for BS05453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 749..1597 13..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:22 Download gff for BS05453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 749..1597 13..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:22 Download gff for BS05453.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10381699..10382109 452..862 99 -> Minus
X 10382181..10382510 122..451 100 -> Minus
X 10382582..10382689 13..121 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:09 Download gff for BS05453.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10276615..10276722 13..121 98   Minus
arm_X 10275732..10276142 452..862 99 -> Minus
arm_X 10276214..10276543 122..451 100 -> Minus

BS05453.5prime Sequence

883 bp (793 high quality bases) assembled on 2005-12-02

> BS05453.5prime
GAAGTTATCAGTCGACATGCAGCAGCGCCGACAGCCGGCGAATGGCAACG
GCAGAGGAGGAGGAACCACCGCCGCCGTCCGTACGGAGGAGCAGCAACAA
CAGCAGCAGCCATTGAGTCAGGATGCTGGCGCCAAGGAGGCGGGCAGCAC
GCCGGGCAAGGCAACGGGACGCGGCTGCTATTTCTCGCTGGCCTTCTCCA
TCGGTTCGATGGGCCTGGCCTGCGGCAGCCTGTGGCAGATACCGAACAGC
AGTGACCGCATCTCGCTGCAGCGCGGCCTGGTGCTCACCTCGCTGGGATT
CATCTATTTTGTCTCGCTAACGGACTTCTGCAACAAATACCTGCTGGAGA
CGACGCATGGACAGCGCTTTCGTCGCAAGTACCGCCTGATGATGTCCGAC
GTCCTGGAGATAACCAACAAAATCGTCTCGGCAATCCAGGCCTCATTCTC
CTTCTTCGTGGGACTCATCGTCTGCAAGTCGACGTGCACCAAATCCTTTG
TATATGCATCCCACTTCTTGATGGAGGCGTACGGTTGGTTCGGCACTGCT
TACTTTATGTACGACATCTGGTCGATGTACAAGGTGCACACCCAGAAGAT
CGCCGACAAGCTGCACCTGCTGCGCATTACCAAGGGTCAAGGGGCGGTGG
TGAGCAATGGCCACGCCAATGGCAAGGTCAACGGCAAGTCGGCCAGCGGC
AACAACAACGGCAGCACTCCAACGAATCTGCACGAGATCTGCGACTACGA
TGGAGCCTGTGTCCAGATACCCAAGGACGGCAGATGGGACTTTCTCANGT
ACGTGGTCACGCACCCGGTCATGATGATACACCATGTCTTCATCGGAACA
TTTGGATTGCTGGTGGTGACGTACATTCGCGGT

BS05453.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-PA 1290 CG17841-RA 1..867 17..883 4316 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 2488 CG17841-RA 305..1171 17..883 4324 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10381659..10382109 421..871 2244 99.8 Plus
X 23542271 X 10368356..10368759 17..420 2020 100 Plus
Blast to na_te.dros performed 2015-02-04 03:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6854 19..110 153 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6819 15..123 122 61.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 94..189 29..123 117 60.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9124..9219 29..123 117 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2431 653..713 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2838 653..723 114 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2834 45..112 112 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1066..1091 85..110 112 92.3 Plus

BS05453.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:47 Download gff for BS05453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:27 Download gff for BS05453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:57:19 Download gff for BS05453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 301..1171 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:46 Download gff for BS05453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 301..1171 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:46 Download gff for BS05453.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10368352..10368759 9..420 99 -> Plus
X 10381659..10382109 421..871 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:57:19 Download gff for BS05453.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10262385..10262792 9..420 99 -> Plus
arm_X 10275692..10276142 421..871 99 -> Plus

BS05453.complete Sequence

1322 bp (1322 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635121

> BS05453.complete
GAAGTTATCAGTCGACATGCAGCAGCGCCGACAGCCGGCGAATGGCAACG
GCAGAGGAGGAGGAACCACCGCCGCCGTCCGTACGGAGGAGCAGCAACAA
CAGCAGCAGCCATTGAGTCAGGATGCTGGCGCCAAGGAGGCGGGCAGCAC
GCCGGGCAAGGCAACGGGACGCGGCTGCTATTTCTCGCTGGCCTTCTCCA
TCGGTTCGATGGGCCTGGCCTGCGGCAGCCTGTGGCAGATACCGAACAGC
AGTGACCGCATCTCGCTGCAGCGCGGCCTGGTGCTCACCTCGCTGGGATT
CATCTATTTTGTCTCGCTAACGGACTTCTGCAACAAATACCTGCTGGAGA
CGACGCATGGACAGCGCTTTCGTCGCAAGTACCGCCTGATGATGTCCGAC
GTCCTGGAGATAACCAACAAAATCGTCTCGGCAATCCAGGCCTCATTCTC
CTTCTTCGTGGGACTCATCGTCTGCAAGTCGACGTGCACCAAATCCTTTG
TATATGCATCCCACTTCTTGATGGAGGCGTACGGTTGGTTCGGCACTGCT
TACTTTATGTACGACATCTGGTCGATGTACAAGGTGCACACCCAGAAGAT
CGCCGACAAGCTGCACCTGCTGCGCATTACCAAGGGTCAAGGGGCGGTGG
TGAGCAATGGCCACGCCAATGGCAAGGTCAACGGCAAGTCGGCCAGCGGC
AACAACAACGGCAGCACTCCAACGAATCTGCACGAGATCTGCGACTACGA
TGGAGCCTGTGTCCAGATACCCAAGGACGGCAGATGGGACTTTCTCAAGT
ACGTGGTCACGCACCCGGTCATGATGATACACCATGTCTTCATCGGAACA
TTTGGATTGCTGGTGGTGACGTACATTCGCGGTGGCGGTCACTGCATCTA
CAGCTACATGTTCATGATGGAGTTCTCCACGCCGTTCGTCTCGTTGCGCA
GCATCCTGAGCACCATGCGCCTCAAGGATTCACGTGTGTACATCGCCAAC
GGTCTGCTGATGCTGGCCACCTTCTTCGTGTGCCGCGTCTGCATGTGGCC
ATACGTGATGTGGCGCTACAGCCTGGCCATTGAGGCTGCATCCCTGTGGT
CGGCCATGTGGGGCCTGCCGCGAGGATGCCTCATCAGCATCGCTATACTG
TTCTTGCCACAGCTCTACTGGTTCTATCTGATGGTTTTGGGTGCTCTCAA
GGTCTTTCTACCGCAAAAGAGACGGCCGCCCAACGCAGTTCTATCGGCAA
AGTCGGCGGCCGTGCCCACACCAACCCCCACCGCCCTTATAAATGGCAAA
AATTAGAAGCTTTCTAGACCAT

BS05453.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 1290 CG17841-PA 1..1290 17..1306 6450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 2488 CG17841-RA 305..1594 17..1306 6450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10381659..10382109 421..871 2255 100 Plus
X 23542271 X 10368356..10368759 17..420 2020 100 Plus
X 23542271 X 10382180..10382512 871..1203 1665 100 Plus
X 23542271 X 10382580..10382686 1200..1306 535 100 Plus
Blast to na_te.dros performed 2014-11-28 05:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6854 19..110 153 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6819 15..123 122 61.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 94..189 29..123 117 60.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9124..9219 29..123 117 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2431 653..713 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2838 653..723 114 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2834 45..112 112 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1066..1091 85..110 112 92.3 Plus

BS05453.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:25 Download gff for BS05453.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 1..1290 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:44 Download gff for BS05453.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 306..1595 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:36 Download gff for BS05453.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 305..1594 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:25 Download gff for BS05453.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 302..1598 9..1310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:06:44 Download gff for BS05453.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 305..1594 17..1306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:06:44 Download gff for BS05453.complete
Subject Subject Range Query Range Percent Splice Strand
X 10368356..10368759 17..420 100 -> Plus
X 10381659..10382109 421..871 100 -> Plus
X 10382181..10382510 872..1201 100 -> Plus
X 10382582..10382686 1202..1306 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:36 Download gff for BS05453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10262389..10262792 17..420 100 -> Plus
arm_X 10275692..10276142 421..871 100 -> Plus
arm_X 10276214..10276543 872..1201 100 -> Plus
arm_X 10276615..10276719 1202..1306 100   Plus

BS05453.pep Sequence

Translation from 16 to 1305

> BS05453.pep
MQQRRQPANGNGRGGGTTAAVRTEEQQQQQQPLSQDAGAKEAGSTPGKAT
GRGCYFSLAFSIGSMGLACGSLWQIPNSSDRISLQRGLVLTSLGFIYFVS
LTDFCNKYLLETTHGQRFRRKYRLMMSDVLEITNKIVSAIQASFSFFVGL
IVCKSTCTKSFVYASHFLMEAYGWFGTAYFMYDIWSMYKVHTQKIADKLH
LLRITKGQGAVVSNGHANGKVNGKSASGNNNGSTPTNLHEICDYDGACVQ
IPKDGRWDFLKYVVTHPVMMIHHVFIGTFGLLVVTYIRGGGHCIYSYMFM
MEFSTPFVSLRSILSTMRLKDSRVYIANGLLMLATFFVCRVCMWPYVMWR
YSLAIEAASLWSAMWGLPRGCLISIAILFLPQLYWFYLMVLGALKVFLPQ
KRRPPNAVLSAKSAAVPTPTPTALINGKN*

BS05453.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-PA 429 CG17841-PA 1..429 1..429 2274 100 Plus