Clone Sequence Records
BS05455.3prime Sequence
905 bp (826 high quality bases) assembled on 2005-12-02
> BS05455.3prime
ATGGTCTAGAAAGCTTTCAATGATCAGCGACCAGCGGTCCCCAGAACATT
TTCGATATCTTCGAGTCGTCCTCGGTTAAAAAGAACTGACGGCCCAAATG
CACAAACTCCTTGAGCGACAATTGGCCATCGCCGTTCTTGTCTATCACAG
CGAATGAAACGGCAGCATCGTCTTCGGTCAGTCCCAGACAACGGAAGAAG
AGCTTGTATTGTTCGAGATCCAAATGGCCAGTGTGATCAAAGTCCACAGC
CTTAAACAAGTAGGGCAGGAAGCGACCGATGCGTTTGGCCATCTTCTTGT
CGTTGAGACGATGGTGCAGATCGGTGAGGAACTGCTCGGCAGTTACCAGA
TTGTATGGGGTTATCTCCCCGAACTGCTCTTCCCAAGTATGCTTGATCAC
ATCGTTGAATTCGGCAGCGACCTCTGGGGTCAAATGGCCCAGATCGCTAA
AGCGTTTGGCCAGCAAACTAAAGTCGTCGAAGGACACGACGCCGTCGTGA
TTAACGTCCAAAATGCGGTGGAGAGTACGCATTTTGCGGCGCCAGAATGC
TGAGTCGCCCCGTTCGCTGCGCTTGGAATCCATTTTCTGGCGACGACGCT
CGAACTCATCATCCGAGTCGGAATCGCTATCACTTTCCACCTCCCGTCGC
AATTTGGCCGCTCCGGCCTTCTTTGAATATTGACGGACAGCCTGGACCAC
GGCAGTTGGCATTTGATGCCAAAGCAGTGAATGTGCTCCATGTCCACAGA
TAATGCCGCCAGATGCCAGGCGGTGACAATCGCTGTGCGAAATGGGCGTG
TTTGGNGGCGGGGAGGCATTCTGCTGCAGAACGCCGACAGTTGCGGCCAT
GTTGCGTTCCNAAATTTCTCTTGAAGTGCGCAAATACCACGGCTCACGAT
GGAGA
BS05455.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1435-PA | 897 | CBP-RA | 30..897 | 884..17 | 4277 | 99.6 | Minus |
CG1435-PB | 696 | CBP-RB | 1..696 | 712..17 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-RC | 2185 | CG1435-RC | 372..1261 | 905..17 | 4388 | 99.6 | Minus |
CBP-RA | 2185 | CG1435-RA | 372..1261 | 905..17 | 4388 | 99.6 | Minus |
CBP-RB | 2225 | CG1435-RB | 546..1301 | 772..17 | 3780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7341194..7341504 | 560..250 | 1555 | 100 | Minus |
X | 23542271 | X | 7341572..7341807 | 252..17 | 1180 | 100 | Minus |
X | 23542271 | X | 7340300..7340517 | 776..559 | 1075 | 99.5 | Minus |
X | 23542271 | X | 7337723..7337856 | 905..773 | 583 | 97 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:50:32 has no hits.
BS05455.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:51 Download gff for
BS05455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-PA | 9..897 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:31 Download gff for
BS05455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1435-PA | 9..897 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:12:10 Download gff for
BS05455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 373..1267 | 11..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:11 Download gff for
BS05455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 373..1267 | 11..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:11 Download gff for
BS05455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7337724..7337856 | 773..904 | 97 | -> | Minus |
X | 7340304..7340516 | 560..772 | 100 | -> | Minus |
X | 7341195..7341503 | 251..559 | 100 | -> | Minus |
X | 7341574..7341813 | 11..250 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:12:10 Download gff for
BS05455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7231757..7231889 | 773..904 | 97 | -> | Minus |
arm_X | 7234337..7234549 | 560..772 | 100 | -> | Minus |
arm_X | 7235228..7235536 | 251..559 | 100 | -> | Minus |
arm_X | 7235607..7235846 | 11..250 | 98 | | Minus |
BS05455.5prime Sequence
926 bp (757 high quality bases) assembled on 2005-12-02
> BS05455.5prime
GAAGTTATCAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGC
GCACTTCAAGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTT
CTGCAGCAGAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGA
TTGTCACCGCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATT
CACTGCTTTGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAA
TATTCAAAGAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGA
TAGCGATTCCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGG
ATTCCAAGCGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATG
CGTACTCTCCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTT
CGACGACTTTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGA
CCCCAGAGGTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAA
GAGCAGTTCGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTT
CCTCACCGATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCA
TCGGTCGCTTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACT
GGCCATTTGGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACT
GACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACAAGAACGGCG
ATGGCCAATTGTCGCTCAAGGAGTTTGTGCATTTGGGCCGTCAGTTCTTT
TTACCGAGGACGACTCGAAGATATCGAAAAATGTCTGGGGACCGCTGGTC
GCTGATCATTGAAAGCTTTCTAGACC
BS05455.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1435-PA | 897 | CBP-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
CG1435-PB | 696 | CBP-RB | 1..636 | 218..853 | 3180 | 100 | Plus |
CG1435-PA | 897 | CBP-RA | 869..897 | 884..912 | 145 | 100 | Plus |
CG1435-PB | 696 | CBP-RB | 668..696 | 884..912 | 145 | 100 | Plus |
CG1435-PA | 897 | CBP-RA | 838..865 | 853..880 | 140 | 100 | Plus |
CG1435-PB | 696 | CBP-RB | 637..664 | 853..880 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-RC | 2185 | CG1435-RC | 365..1261 | 17..912 | 4415 | 99.7 | Plus |
CBP-RA | 2185 | CG1435-RA | 365..1261 | 17..912 | 4415 | 99.7 | Plus |
CBP-RB | 2225 | CG1435-RB | 546..1301 | 158..912 | 3710 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7341194..7341504 | 370..680 | 1555 | 100 | Plus |
X | 23542271 | X | 7341572..7341807 | 678..912 | 1085 | 98.3 | Plus |
X | 23542271 | X | 7340300..7340517 | 154..371 | 1075 | 99.5 | Plus |
X | 23542271 | X | 7337716..7337856 | 17..157 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:05:36 has no hits.
BS05455.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:51 Download gff for
BS05455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-PA | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:32 Download gff for
BS05455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1435-PA | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:33 Download gff for
BS05455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1267 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:52 Download gff for
BS05455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1267 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:52 Download gff for
BS05455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7337716..7337856 | 17..157 | 100 | -> | Plus |
X | 7340304..7340516 | 158..370 | 100 | -> | Plus |
X | 7341195..7341503 | 371..679 | 100 | -> | Plus |
X | 7341574..7341813 | 680..918 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:33 Download gff for
BS05455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7231749..7231889 | 17..157 | 100 | -> | Plus |
arm_X | 7234337..7234549 | 158..370 | 100 | -> | Plus |
arm_X | 7235228..7235536 | 371..679 | 100 | -> | Plus |
arm_X | 7235607..7235846 | 680..918 | 97 | | Plus |
BS05455.complete Sequence
929 bp (929 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635122
> BS05455.complete
GAAGTTATCAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGC
GCACTTCAAGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTT
CTGCAGCAGAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGA
TTGTCACCGCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATT
CACTGCTTTGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAA
TATTCAAAGAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGA
TAGCGATTCCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGG
ATTCCAAGCGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATG
CGTACTCTCCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTT
CGACGACTTTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGA
CCCCAGAGGTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAA
GAGCAGTTCGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTT
CCTCACCGATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCA
TCGGTCGCTTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACT
GGCCATTTGGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACT
GACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACAAGAACGGCG
ATGGCCAATTGTCGCTCAAGGAGTTTGTGCATTTGGGCCGTCAGTTCTTT
TTAACCGAGGACGACTCGAAGATATCGAAAATGTTCTGGGGACCGCTGGT
CGCTGATCATTGAAAGCTTTCTAGACCAT
BS05455.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-RC | 1656 | CG1435-PC | 1..897 | 17..913 | 4485 | 100 | Plus |
CBP-RA | 897 | CG1435-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
CBP-RB | 696 | CG1435-PB | 1..696 | 218..913 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-RC | 2185 | CG1435-RC | 365..1261 | 17..913 | 4485 | 100 | Plus |
CBP-RA | 2185 | CG1435-RA | 365..1261 | 17..913 | 4485 | 100 | Plus |
CBP-RB | 2225 | CG1435-RB | 546..1301 | 158..913 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7341194..7341504 | 370..680 | 1555 | 100 | Plus |
X | 23542271 | X | 7341572..7341807 | 678..913 | 1180 | 100 | Plus |
X | 23542271 | X | 7340300..7340517 | 154..371 | 1075 | 99.5 | Plus |
X | 23542271 | X | 7337716..7337856 | 17..157 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:31 has no hits.
BS05455.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:26 Download gff for
BS05455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:24 Download gff for
BS05455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 347..1249 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:52 Download gff for
BS05455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1260 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:26 Download gff for
BS05455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 347..1249 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:25 Download gff for
BS05455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1260 | 17..912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:25 Download gff for
BS05455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7341574..7341806 | 680..912 | 100 | | Plus |
X | 7337716..7337856 | 17..157 | 100 | -> | Plus |
X | 7340304..7340516 | 158..370 | 100 | -> | Plus |
X | 7341195..7341503 | 371..679 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:52 Download gff for
BS05455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7235607..7235839 | 680..912 | 100 | | Plus |
arm_X | 7231749..7231889 | 17..157 | 100 | -> | Plus |
arm_X | 7234337..7234549 | 158..370 | 100 | -> | Plus |
arm_X | 7235228..7235536 | 371..679 | 100 | -> | Plus |
BS05455.pep Sequence
Translation from 16 to 912
> BS05455.pep
MAFSIVSRGILRTSREILERNMAATVGVLQQNASPPPNTPISHSDCHRLA
SGGIICGHGAHSLLWHQMPTAVVQAVRQYSKKAGAAKLRREVESDSDSDS
DDEFERRRQKMDSKRSERGDSAFWRRKMRTLHRILDVNHDGVVSFDDFSL
LAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFGEITPYNLVTAEQFLTDLH
HRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDA
AVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVADH*
BS05455.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-PA | 298 | CG1435-PA | 1..298 | 1..298 | 1564 | 100 | Plus |
CBP-PC | 551 | CG1435-PC | 1..298 | 1..298 | 1564 | 100 | Plus |
CBP-PB | 231 | CG1435-PB | 1..231 | 68..298 | 1210 | 100 | Plus |