Clone BS05455 Report

Search the DGRC for BS05455

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCBP-RA
Protein status:BS05455.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05455.3prime Sequence

905 bp (826 high quality bases) assembled on 2005-12-02

> BS05455.3prime
ATGGTCTAGAAAGCTTTCAATGATCAGCGACCAGCGGTCCCCAGAACATT
TTCGATATCTTCGAGTCGTCCTCGGTTAAAAAGAACTGACGGCCCAAATG
CACAAACTCCTTGAGCGACAATTGGCCATCGCCGTTCTTGTCTATCACAG
CGAATGAAACGGCAGCATCGTCTTCGGTCAGTCCCAGACAACGGAAGAAG
AGCTTGTATTGTTCGAGATCCAAATGGCCAGTGTGATCAAAGTCCACAGC
CTTAAACAAGTAGGGCAGGAAGCGACCGATGCGTTTGGCCATCTTCTTGT
CGTTGAGACGATGGTGCAGATCGGTGAGGAACTGCTCGGCAGTTACCAGA
TTGTATGGGGTTATCTCCCCGAACTGCTCTTCCCAAGTATGCTTGATCAC
ATCGTTGAATTCGGCAGCGACCTCTGGGGTCAAATGGCCCAGATCGCTAA
AGCGTTTGGCCAGCAAACTAAAGTCGTCGAAGGACACGACGCCGTCGTGA
TTAACGTCCAAAATGCGGTGGAGAGTACGCATTTTGCGGCGCCAGAATGC
TGAGTCGCCCCGTTCGCTGCGCTTGGAATCCATTTTCTGGCGACGACGCT
CGAACTCATCATCCGAGTCGGAATCGCTATCACTTTCCACCTCCCGTCGC
AATTTGGCCGCTCCGGCCTTCTTTGAATATTGACGGACAGCCTGGACCAC
GGCAGTTGGCATTTGATGCCAAAGCAGTGAATGTGCTCCATGTCCACAGA
TAATGCCGCCAGATGCCAGGCGGTGACAATCGCTGTGCGAAATGGGCGTG
TTTGGNGGCGGGGAGGCATTCTGCTGCAGAACGCCGACAGTTGCGGCCAT
GTTGCGTTCCNAAATTTCTCTTGAAGTGCGCAAATACCACGGCTCACGAT
GGAGA

BS05455.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1435-PA 897 CBP-RA 30..897 884..17 4277 99.6 Minus
CG1435-PB 696 CBP-RB 1..696 712..17 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RC 2185 CG1435-RC 372..1261 905..17 4388 99.6 Minus
CBP-RA 2185 CG1435-RA 372..1261 905..17 4388 99.6 Minus
CBP-RB 2225 CG1435-RB 546..1301 772..17 3780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7341194..7341504 560..250 1555 100 Minus
X 23542271 X 7341572..7341807 252..17 1180 100 Minus
X 23542271 X 7340300..7340517 776..559 1075 99.5 Minus
X 23542271 X 7337723..7337856 905..773 583 97 Minus
Blast to na_te.dros performed on 2015-02-02 18:50:32 has no hits.

BS05455.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:51 Download gff for BS05455.3prime
Subject Subject Range Query Range Percent Splice Strand
CBP-PA 9..897 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:31 Download gff for BS05455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1435-PA 9..897 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:12:10 Download gff for BS05455.3prime
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 373..1267 11..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:11 Download gff for BS05455.3prime
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 373..1267 11..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:11 Download gff for BS05455.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7337724..7337856 773..904 97 -> Minus
X 7340304..7340516 560..772 100 -> Minus
X 7341195..7341503 251..559 100 -> Minus
X 7341574..7341813 11..250 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:12:10 Download gff for BS05455.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7231757..7231889 773..904 97 -> Minus
arm_X 7234337..7234549 560..772 100 -> Minus
arm_X 7235228..7235536 251..559 100 -> Minus
arm_X 7235607..7235846 11..250 98   Minus

BS05455.5prime Sequence

926 bp (757 high quality bases) assembled on 2005-12-02

> BS05455.5prime
GAAGTTATCAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGC
GCACTTCAAGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTT
CTGCAGCAGAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGA
TTGTCACCGCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATT
CACTGCTTTGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAA
TATTCAAAGAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGA
TAGCGATTCCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGG
ATTCCAAGCGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATG
CGTACTCTCCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTT
CGACGACTTTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGA
CCCCAGAGGTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAA
GAGCAGTTCGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTT
CCTCACCGATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCA
TCGGTCGCTTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACT
GGCCATTTGGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACT
GACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACAAGAACGGCG
ATGGCCAATTGTCGCTCAAGGAGTTTGTGCATTTGGGCCGTCAGTTCTTT
TTACCGAGGACGACTCGAAGATATCGAAAAATGTCTGGGGACCGCTGGTC
GCTGATCATTGAAAGCTTTCTAGACC

BS05455.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1435-PA 897 CBP-RA 1..837 17..853 4185 100 Plus
CG1435-PB 696 CBP-RB 1..636 218..853 3180 100 Plus
CG1435-PA 897 CBP-RA 869..897 884..912 145 100 Plus
CG1435-PB 696 CBP-RB 668..696 884..912 145 100 Plus
CG1435-PA 897 CBP-RA 838..865 853..880 140 100 Plus
CG1435-PB 696 CBP-RB 637..664 853..880 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RC 2185 CG1435-RC 365..1261 17..912 4415 99.7 Plus
CBP-RA 2185 CG1435-RA 365..1261 17..912 4415 99.7 Plus
CBP-RB 2225 CG1435-RB 546..1301 158..912 3710 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7341194..7341504 370..680 1555 100 Plus
X 23542271 X 7341572..7341807 678..912 1085 98.3 Plus
X 23542271 X 7340300..7340517 154..371 1075 99.5 Plus
X 23542271 X 7337716..7337856 17..157 705 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:05:36 has no hits.

BS05455.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:51 Download gff for BS05455.5prime
Subject Subject Range Query Range Percent Splice Strand
CBP-PA 1..897 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:32 Download gff for BS05455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1435-PA 1..897 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:33 Download gff for BS05455.5prime
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1267 17..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:52 Download gff for BS05455.5prime
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1267 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:52 Download gff for BS05455.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7337716..7337856 17..157 100 -> Plus
X 7340304..7340516 158..370 100 -> Plus
X 7341195..7341503 371..679 100 -> Plus
X 7341574..7341813 680..918 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:33 Download gff for BS05455.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7231749..7231889 17..157 100 -> Plus
arm_X 7234337..7234549 158..370 100 -> Plus
arm_X 7235228..7235536 371..679 100 -> Plus
arm_X 7235607..7235846 680..918 97   Plus

BS05455.complete Sequence

929 bp (929 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635122

> BS05455.complete
GAAGTTATCAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGC
GCACTTCAAGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTT
CTGCAGCAGAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGA
TTGTCACCGCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATT
CACTGCTTTGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAA
TATTCAAAGAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGA
TAGCGATTCCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGG
ATTCCAAGCGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATG
CGTACTCTCCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTT
CGACGACTTTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGA
CCCCAGAGGTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAA
GAGCAGTTCGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTT
CCTCACCGATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCA
TCGGTCGCTTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACT
GGCCATTTGGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACT
GACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACAAGAACGGCG
ATGGCCAATTGTCGCTCAAGGAGTTTGTGCATTTGGGCCGTCAGTTCTTT
TTAACCGAGGACGACTCGAAGATATCGAAAATGTTCTGGGGACCGCTGGT
CGCTGATCATTGAAAGCTTTCTAGACCAT

BS05455.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RC 1656 CG1435-PC 1..897 17..913 4485 100 Plus
CBP-RA 897 CG1435-PA 1..897 17..913 4485 100 Plus
CBP-RB 696 CG1435-PB 1..696 218..913 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RC 2185 CG1435-RC 365..1261 17..913 4485 100 Plus
CBP-RA 2185 CG1435-RA 365..1261 17..913 4485 100 Plus
CBP-RB 2225 CG1435-RB 546..1301 158..913 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7341194..7341504 370..680 1555 100 Plus
X 23542271 X 7341572..7341807 678..913 1180 100 Plus
X 23542271 X 7340300..7340517 154..371 1075 99.5 Plus
X 23542271 X 7337716..7337856 17..157 705 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:20:31 has no hits.

BS05455.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:26 Download gff for BS05455.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:24 Download gff for BS05455.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 347..1249 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:52 Download gff for BS05455.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1260 17..912 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:26 Download gff for BS05455.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 347..1249 17..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:25 Download gff for BS05455.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1260 17..912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:25 Download gff for BS05455.complete
Subject Subject Range Query Range Percent Splice Strand
X 7341574..7341806 680..912 100   Plus
X 7337716..7337856 17..157 100 -> Plus
X 7340304..7340516 158..370 100 -> Plus
X 7341195..7341503 371..679 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:52 Download gff for BS05455.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7235607..7235839 680..912 100   Plus
arm_X 7231749..7231889 17..157 100 -> Plus
arm_X 7234337..7234549 158..370 100 -> Plus
arm_X 7235228..7235536 371..679 100 -> Plus

BS05455.pep Sequence

Translation from 16 to 912

> BS05455.pep
MAFSIVSRGILRTSREILERNMAATVGVLQQNASPPPNTPISHSDCHRLA
SGGIICGHGAHSLLWHQMPTAVVQAVRQYSKKAGAAKLRREVESDSDSDS
DDEFERRRQKMDSKRSERGDSAFWRRKMRTLHRILDVNHDGVVSFDDFSL
LAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFGEITPYNLVTAEQFLTDLH
HRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDA
AVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVADH*

BS05455.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-PA 298 CG1435-PA 1..298 1..298 1564 100 Plus
CBP-PC 551 CG1435-PC 1..298 1..298 1564 100 Plus
CBP-PB 231 CG1435-PB 1..231 68..298 1210 100 Plus