Clone Sequence Records
BS05457.complete Sequence
2384 bp assembled on 2009-12-07
GenBank Submission: KX798215
> BS05457.complete
GAAGTTATCAGTCGACATGTCGGCAACGAGGTTTTTGAGTGCCGTTGGCC
AAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACCAGAGCCCTGCCC
ATTTCGGCCCAGCTTCTCCAGAGGCGCCGCCTAATGTCCACGAATCCCGC
ACCGGTTGCCAACAAGCATCTCCACACCAAGGTGGTCAATGGAGTGCTTG
TGATCAAGATCGACTCACCCAATGCCAAGGTGAATTCCCTGGGCTCCGAA
GTGAGCGATGAGTTCGAGCGAGTGATTAAGGACCTGGAGACGAATCCTGC
CGTCAATTCCGCCGTGCTGATCTCGGGCAAACCGGGCTGCTTTGTGGCCG
GAGCCGACATCGGGATGCTGGAAGCATGCCAGACGGCGGAGGAGGCCACG
CTGATCTCCCACGGCGCCCAGGTGATGTTCGATCGCATGGAGCGCAGCAA
GAAGCCCATTGTGGCCGCCATCAGCGGAGTCTGTCTGGGTGGTGGTCTGG
AACTCGCCCTTGCCTGCCATTACCGCATTGCCACCAAGGACAGCAAGACC
AAACTGGGTCTGCCCGAGGTCATGCTGGGTCTCCTGCCCGGCGGCGGTGG
CACCGTCCGCCTGCCCAAGCTTACATCCGTGCCCACGGCTCTGGATATGG
AGCTGACAGGCAAACAGGTGCGCGCCGATCGCGCCAAACGACTGGGCATC
GTGGATCTGTTGGTGGATCCCCTAGGTCCTGGACTCCAGCCTGCTGAGCA
AAACACTATCGAGTACCTGGAGAAGACCGCCGTGCAGGTCGCCAACGATC
TGGCTAGTGGTAAACTTCGCGTAAATCGCGAGAAAAGCGGTCTCGTCAGC
AAGATCCAGTCCTTCGTCATGGACACCGACTTTGTGAAGAACAAGATTTT
CGACACTGCCAGGAAACAGGTGCTCAAGGCCTCGAACGGTCTCTATCCCG
CTCCTCTGAAGATTCTCGATGTGATCCGTGCTGGCGTGGATAAGGGAACC
GATGCCGGTTACGAGGCGGAGCGCAAGGGCTTCGGCGAGCTATCGGCCAC
GCCCGAGTCGAAGGGTTTGATTGCCCTGTTCCGTGGACAAACGGAGTGCA
AGAAGAACCGATTTGGCAAGCCAGAGCGTCCGGTTAAGACTGTGGGTGTG
CTGGGAGCTGGTCTGATGGGCGCCGGTATTGTACAGGTCTCCGTCGATAA
GGGATATCAGGTGGTGATGAAGGATGCCACCGAAGCCGGCCTGGCTCGTG
GTATTGGACAAGTGCAGAAGGGTTTGGAGACGGCTGTGAAGCGCAAGCGA
ATCTCTGCACTGGAGCGCGATCAGACTCTTGCCAGTCTGCGGCCCACTCT
TGATTACAGCGACTTCAAGAACGCAGACATCATCATCGAAGCTGTTTTCG
AGGACATCAAGGTTAAGCATCGAGTGATCAAGGAGCTGGAAGCAGTGGTT
CCAGAGCACTGCGTCATTGCCACCAACACCAGCGCCATTCCCATCACCAA
GATTGCTGCTGGAAGCTCGCGTCCCGAGAAGGTTGTTGGCATGCACTACT
TCTCGCCCGTGGACAAGATGCAGCTGCTGGAAATCATCACTCACCCAGGA
ACCTCCAAGGACACCATCGCACAGGCCGTGGCCGTCGGTCTCAAGCAAGG
CAAGGTCGTTATCACTGTTGGTGACGGACCTGGCTTCTATACCACCCGCA
TCCTCTCCACCATGCTGTCGGAAGCCATCAGACTGCTGCAGGAAGGCGTG
GACCCCAAGGATCTGGACCAATACACGAAGAAGTTTGGCTTCCCCGTGGG
TGCTGCGACCCTTGCGGATGAGGTTGGCATTGACGTGGGTTCCCACATTG
CCGTCGACTTGGCAAAGGCATTCGGCGAACGTTTCAGCGGTGGAAACTTG
GAAGTAATGAATGATCTGGTCCTGGCTGGTTTCCTCGGACGCAAGTCCGG
CAAGGGTATCTTCCTGTACGATGGCCAGAAGAGGGGCACTCGTCCAGTGA
ACAACGATGCTCTCGAAATCGTGAAACAAAAGTACGCTTTAGTCTCAAAG
GGAGCCAATGCCCCCGAGGATCTGACGCTGCGTATGGTATCCCGCTTCAT
CAACGAAGCCGTGCTCTGTCTGGAGGAGAAGATTCTGGACAGTCCGCTGG
AGGGCGATGTCGGAGCCGTGTTCGGCCTGGGCTTCCCGCCATTCTCCGGT
GGTCCCTTCCGCTGGGTCGATCAGTATGGAGCCGGCAAACTGGTCAGCAA
GATGCAATCCTATGCTGAGCTGTACGGAGCTCCCTTCAAGCCCGCTCAGA
CCCTGCTCGACATGGCTAAGGACCCGTCGAAGAAGTTCTACCCCAAGACT
GGCTCCTCGAAGTTGTAGAAGCTTTCTAGACCAT
BS05457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2352 | CG4389-PA | 1..2352 | 17..2368 | 11760 | 100 | Plus |
| Mtpalpha-RB | 2235 | CG4389-PB | 1..2235 | 134..2368 | 11175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2725 | CG4389-RA | 177..2529 | 17..2369 | 11765 | 100 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 402..2680 | 91..2369 | 11395 | 100 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 177..253 | 17..93 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9574469..9575240 | 1731..960 | 3860 | 100 | Minus |
| 2L | 23513712 | 2L | 9575498..9576231 | 824..91 | 3670 | 100 | Minus |
| 2L | 23513712 | 2L | 9573769..9574410 | 2369..1728 | 3210 | 100 | Minus |
| 2L | 23513712 | 2L | 9575291..9575435 | 965..821 | 710 | 99.3 | Minus |
| 2L | 23513712 | 2L | 9576518..9576593 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:26:56 has no hits.
BS05457.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:07 Download gff for
BS05457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-RA | 176..2527 | 17..2368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:26 Download gff for
BS05457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 177..2528 | 17..2368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:02 Download gff for
BS05457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-RA | 176..2527 | 17..2368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:39 Download gff for
BS05457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 177..2528 | 17..2368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:39 Download gff for
BS05457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9573770..9574406 | 1732..2368 | 100 | <- | Minus |
| 2L | 9574469..9575238 | 962..1731 | 100 | <- | Minus |
| 2L | 9575295..9575435 | 821..961 | 100 | <- | Minus |
| 2L | 9575502..9576229 | 93..820 | 100 | <- | Minus |
| 2L | 9576518..9576593 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:26 Download gff for
BS05457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9573770..9574406 | 1732..2368 | 100 | <- | Minus |
| arm_2L | 9574469..9575238 | 962..1731 | 100 | <- | Minus |
| arm_2L | 9575295..9575435 | 821..961 | 100 | <- | Minus |
| arm_2L | 9575502..9576229 | 93..820 | 100 | <- | Minus |
| arm_2L | 9576518..9576593 | 17..92 | 100 | | Minus |
BS05457.3prime Sequence
859 bp (858 high quality bases) assembled on 2005-12-02
> BS05457.3prime
ATGGTCTAGAAAGCTTCTACAACTTCGAGGAGCCAGTCTTGGGGTAGAAC
TTCTTCGACGGGTCCTTAGCCATGTCGAGCAGGGTCTGAGCGGGCTTGAA
GGGAGCTCCGTACAGCTCAGCATAGGATTGCATCTTGCTGACCAGTTTGC
CGGCTCCATACTGATCGACCCAGCGGAAGGGACCACCGGAGAATGGCGGG
AAGCCCAGGCCGAACACGGCTCCGACATCGCCCTCCAGCGGACTGTCCAG
AATCTTCTCCTCCAGACAGAGCACGGCTTCGTTGATGAAGCGGGATACCA
TACGCAGCGTCAGATCCTCGGGGGCATTGGCTCCCTTTGAGACTAAAGCG
TACTTTTGTTTCACGATTTCGAGAGCATCGTTGTTCACTGGACGAGTGCC
CCTCTTCTGGCCATCGTACAGGAAGATACCCTTGCCGGACTTGCGTCCGA
GGAAACCAGCCAGGACCAGATCATTCATTACTTCCAAGTTTCCACCGCTG
AAACGTTCGCCGAATGCCTTTGCCAAGTCGACGGCAATGTGGGAACCCAC
GTCAATGCCAACCTCATCCGCAAGGGTCGCAGCACCCACGGGGAAGCCAA
ACTTCTTCGTGTATTGGTCCAGATCCTTGGGGTCCACGCCTTCCTGCAGC
AGTCTGATGGCTTCCGACAGCATGGTGGAGAGGATGCGGGTGGTATAGAA
GCCAGGTCCGTCACCAACAGTGATAACGACCTTGCCTTGCTTGAGACCGA
CGGCCACGGCCTGTGCGATGGTGTCCTTGGAGGTTCCTGGGTGAGTGATG
ATTTCCAGCAGCTGCATCTTGTCCACGGGCGAGAAGTAGTGCATGCCAAC
AACCTTCTC
BS05457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4389-PC | 2235 | CG4389-RC | 1393..2235 | 859..17 | 4215 | 100 | Minus |
| CG4389-PB | 2235 | CG4389-RB | 1393..2235 | 859..17 | 4215 | 100 | Minus |
| CG4389-PA | 2352 | CG4389-RA | 1510..2352 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2725 | CG4389-RA | 1686..2529 | 859..16 | 4220 | 100 | Minus |
| Mtpalpha-RB | 2886 | CG4389-RB | 1837..2680 | 859..16 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9573769..9574410 | 16..657 | 3210 | 100 | Plus |
| 2L | 23513712 | 2L | 9574469..9574674 | 654..859 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:16:21 has no hits.
BS05457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:54 Download gff for
BS05457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-PA | 1510..2352 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:36 Download gff for
BS05457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-PA | 1510..2352 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:01:31 Download gff for
BS05457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RB | 1837..2687 | 9..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:55 Download gff for
BS05457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RB | 1837..2687 | 9..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:55 Download gff for
BS05457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9573762..9574406 | 9..653 | 99 | <- | Plus |
| 2L | 9574469..9574674 | 654..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:01:31 Download gff for
BS05457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9573762..9574406 | 9..653 | 99 | <- | Plus |
| arm_2L | 9574469..9574674 | 654..859 | 100 | | Plus |
BS05457.5prime Sequence
885 bp (717 high quality bases) assembled on 2005-12-02
> BS05457.5prime
GAAGTTATCAGTCGACATGTCGGCAACGAGGTTTTTGAGTGCCGTTGGCC
AAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACCAGAGCCCTGCCC
ATTTCGGCCCAGCTTCTCCAGAGGCGCCGCCTAATGTCCACGAATCCCGC
ACCGGTTGCCAACAAGCATCTCCACACCAAGGTGGTCAATGGAGTGCTTG
TGATCAAGATCGACTCACCCAATGCCAAGGTGAATTCCCTGGGCTCCGAA
GTGAGCGATGAGTTCGAGCGAGTGATTAAGGACCTGGAGACGAATCCTGC
CGTCAATTCCGCCGTGCTGATCTCGGGCAAACCGGGCTGCTTTGTGGCCG
GAGCCGACATCGGGATGCTGGAAGCATGCCAGACGGCGGAGGAGGCCACG
CTGATCTCCCACGGCGCCCAGGTGATGTTCGATCGCATGGAGCGCAGCAA
GAAGCCCATTGTGGCCGCCATCAGCGGAGTCTGTCTGGGTGGTGGTCTGG
AACTCGCCCTTGCCTGCCATTACCGCATTGCCACCAAGGACAGCAAGACC
AAACTGGGTCTGCCCGAGGTCATGCTGGGTCTCCTGCCCGGCGGCGGTGG
CACCGTCCGCCTGCCCAAGCTTACATCCGTGCCCACGGCTCTGGATATGG
AGCTGACAGGCAAACAGGTGCGCGCCGATCGCGCCAAACGACTGGGCATC
GTGGATCTGTTGGTGGATCCCCTAGGTCCTGGACTCCAGCCTGCTGAGCA
AAACACTATCGAGTACCTGGAGAAGACCGCCGTGCAGGTCGCCAACGATC
TGGCTAGTGGTAAACTTCGCGTAAATCGCGAGAAAAAGCGTCTCGTCAGC
AAGATCCAGTCCTTCGTCATGGACACCGACTTTGT
BS05457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4389-PA | 2352 | CG4389-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
| CG4389-PC | 2235 | CG4389-RC | 1..703 | 134..836 | 3515 | 100 | Plus |
| CG4389-PB | 2235 | CG4389-RB | 1..703 | 134..836 | 3515 | 100 | Plus |
| CG4389-PA | 2352 | CG4389-RA | 824..869 | 840..885 | 230 | 100 | Plus |
| CG4389-PC | 2235 | CG4389-RC | 707..752 | 840..885 | 230 | 100 | Plus |
| CG4389-PB | 2235 | CG4389-RB | 707..752 | 840..885 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2725 | CG4389-RA | 177..1045 | 17..885 | 4300 | 99.8 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 402..1196 | 91..885 | 3930 | 99.7 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 177..253 | 17..93 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9575498..9576231 | 824..91 | 3670 | 100 | Minus |
| 2L | 23513712 | 2L | 9576518..9576593 | 92..17 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 9575371..9575435 | 885..821 | 280 | 95.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:04:31 has no hits.
BS05457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:55 Download gff for
BS05457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:38 Download gff for
BS05457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:24 Download gff for
BS05457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 173..1045 | 10..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:19 Download gff for
BS05457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 173..1045 | 10..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:19 Download gff for
BS05457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9575371..9575435 | 821..885 | 96 | <- | Minus |
| 2L | 9575502..9576229 | 93..820 | 100 | <- | Minus |
| 2L | 9576518..9576597 | 10..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:24 Download gff for
BS05457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9575371..9575435 | 821..885 | 96 | <- | Minus |
| arm_2L | 9575502..9576229 | 93..820 | 100 | <- | Minus |
| arm_2L | 9576518..9576597 | 10..92 | 96 | | Minus |
BS05457.pep Sequence
Translation from 16 to 2367
> BS05457.pep
MSATRFLSAVGQISRQQLLQNKCTRALPISAQLLQRRRLMSTNPAPVANK
HLHTKVVNGVLVIKIDSPNAKVNSLGSEVSDEFERVIKDLETNPAVNSAV
LISGKPGCFVAGADIGMLEACQTAEEATLISHGAQVMFDRMERSKKPIVA
AISGVCLGGGLELALACHYRIATKDSKTKLGLPEVMLGLLPGGGGTVRLP
KLTSVPTALDMELTGKQVRADRAKRLGIVDLLVDPLGPGLQPAEQNTIEY
LEKTAVQVANDLASGKLRVNREKSGLVSKIQSFVMDTDFVKNKIFDTARK
QVLKASNGLYPAPLKILDVIRAGVDKGTDAGYEAERKGFGELSATPESKG
LIALFRGQTECKKNRFGKPERPVKTVGVLGAGLMGAGIVQVSVDKGYQVV
MKDATEAGLARGIGQVQKGLETAVKRKRISALERDQTLASLRPTLDYSDF
KNADIIIEAVFEDIKVKHRVIKELEAVVPEHCVIATNTSAIPITKIAAGS
SRPEKVVGMHYFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVIT
VGDGPGFYTTRILSTMLSEAIRLLQEGVDPKDLDQYTKKFGFPVGAATLA
DEVGIDVGSHIAVDLAKAFGERFSGGNLEVMNDLVLAGFLGRKSGKGIFL
YDGQKRGTRPVNNDALEIVKQKYALVSKGANAPEDLTLRMVSRFINEAVL
CLEEKILDSPLEGDVGAVFGLGFPPFSGGPFRWVDQYGAGKLVSKMQSYA
ELYGAPFKPAQTLLDMAKDPSKKFYPKTGSSKL*
BS05457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-PA | 783 | CG4389-PA | 1..783 | 1..783 | 3942 | 100 | Plus |
| Mtpalpha-PB | 744 | CG4389-PB | 1..744 | 40..783 | 3756 | 100 | Plus |
| CG8778-PA | 299 | CG8778-PA | 48..218 | 59..233 | 271 | 38.3 | Plus |
| CG6543-PA | 295 | CG6543-PA | 54..252 | 62..259 | 235 | 33.6 | Plus |
| CG6543-PB | 295 | CG6543-PB | 54..252 | 62..259 | 235 | 33.6 | Plus |
