Clone Sequence Records
BS05458.3prime Sequence
883 bp (730 high quality bases) assembled on 2005-12-02
> BS05458.3prime
ATGGTCTAGAAAGCTTCTAACTTTTGCGCTCGGAGTTCTTTAGCTCTGCT
AAGTACCAAGTGAAAGTTGGAAATTGTTTGATGCTGTAGATAGAATACTT
TATCGAGTTGATTCCATCCTGTTCTATTTTGCTCATGCCATTCTGTAAGT
TTTCATAGCGCTTAGGATTGGCCTTTTCCTTCTGATGCTTCAGCATCTTG
TAGCGAGCTATGTTGACCGGATACCTTGATATGAATAGGTTTGCGTGCTT
CAACCTGTTGGACATGTCGTCATCCTCGCCGCCCCAGCCAAAGAACGAGT
TTGAGAACCCATTTACGGCCTGAAAGTGCTCACGCGTCATTGCGGAAACA
CCTCCAAATATTGATCGATAAGGCAACCTGAAGTTCAGCGTGTCTATAGC
CACTGACATGTGTCGCGGCTGACGTGGACAGTTGTAAAGATTGCGGTCGT
CCAAAGGCAGAAGATCGACATCGTGGAATATAAAACAATCCCACTGGTAC
AGCTTTAAGGCCTCCAAATAACCAATGTTCATCATGGCAGCCCGATTAAA
GGGCTTCCCGTTGGTCTGCTCTACAATGAAAATGCGATAGGCGATGCGCT
GCTTCATCAGAAATGGGTGGATGTTGCGCAGGAAAAGTAATAGATGGGCG
TATCGATCGCGGAAGGGCACAACAATAGCCACGTGATGCTGGGCATTGCA
GTTTTCANGCTCGAAGGCGCCACCAGGGCGCAAAAGAGGTCCAAGCTCCG
CCTCAATAACGTCCAGTGACTCCAGTGTCGTGTTGGGCGTGATGGGTCCA
CATCACGGGGATCGGGATCAGTGCAGTTGGCAAGGAGGGCGGATGTGGAT
TTCTGTCGCGGGGGCAAAAATTCTTTGTGCCAG
BS05458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8536-PA | 1212 | beta4GalNAcTA-RA | 428..1212 | 801..17 | 3906 | 99.8 | Minus |
CG8536-PA | 1212 | beta4GalNAcTA-RA | 356..427 | 872..801 | 360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-RA | 1867 | CG8536-RA | 480..1346 | 881..17 | 4274 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14259716..14260140 | 801..377 | 2114 | 99.8 | Minus |
2R | 25286936 | 2R | 14260195..14260415 | 379..159 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 14260487..14260629 | 159..17 | 715 | 100 | Minus |
2R | 25286936 | 2R | 14259587..14259658 | 872..801 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:10:23 has no hits.
BS05458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:56 Download gff for
BS05458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8536-PA | 343..1212 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:39 Download gff for
BS05458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8536-PA | 343..1212 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:01:02 Download gff for
BS05458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 477..1349 | 12..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:32 Download gff for
BS05458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 477..1349 | 12..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:32 Download gff for
BS05458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14259574..14259658 | 802..883 | 96 | -> | Minus |
2R | 14259716..14260139 | 378..801 | 99 | -> | Minus |
2R | 14260197..14260415 | 159..377 | 100 | -> | Minus |
2R | 14260488..14260632 | 12..158 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:01:02 Download gff for
BS05458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10147079..10147163 | 802..883 | 96 | -> | Minus |
arm_2R | 10147221..10147644 | 378..801 | 99 | -> | Minus |
arm_2R | 10147702..10147920 | 159..377 | 100 | -> | Minus |
arm_2R | 10147993..10148137 | 12..158 | 97 | | Minus |
BS05458.5prime Sequence
888 bp (749 high quality bases) assembled on 2005-12-02
> BS05458.5prime
GAAGTTATCAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCT
TCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTC
CGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCG
CGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCG
GAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAA
GACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAG
AACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGC
GCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACA
TCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACC
CATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGC
TTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAAT
GCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCA
TCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCA
TCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAAT
CGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCA
GTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACC
GCAATCTTTACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATA
GACACGCTGAACTTCAGGTTGCCTTATCGATCAATATT
BS05458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8536-PA | 1212 | beta4GalNAcTA-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-RA | 1867 | CG8536-RA | 134..1006 | 16..888 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14259715..14260140 | 443..868 | 2130 | 100 | Plus |
2R | 25286936 | 2R | 14259355..14259660 | 140..445 | 1530 | 100 | Plus |
2R | 25286936 | 2R | 14259163..14259288 | 16..141 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:13:03 has no hits.
BS05458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:57 Download gff for
BS05458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8536-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:41 Download gff for
BS05458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8536-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:48:40 Download gff for
BS05458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 124..1006 | 7..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:02 Download gff for
BS05458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 124..1006 | 7..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:02 Download gff for
BS05458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14259153..14259288 | 7..141 | 97 | -> | Plus |
2R | 14259357..14259658 | 142..443 | 100 | -> | Plus |
2R | 14259716..14260139 | 444..867 | 100 | -> | Plus |
2R | 14260197..14260217 | 868..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:48:40 Download gff for
BS05458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10146658..10146793 | 7..141 | 97 | -> | Plus |
arm_2R | 10146862..10147163 | 142..443 | 100 | -> | Plus |
arm_2R | 10147221..10147644 | 444..867 | 100 | -> | Plus |
arm_2R | 10147702..10147722 | 868..888 | 100 | | Plus |
BS05458.complete Sequence
1244 bp (1244 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635123
> BS05458.complete
GAAGTTATCAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCT
TCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTC
CGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCG
CGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCG
GAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAA
GACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAG
AACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGC
GCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACA
TCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACC
CATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGC
TTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAAT
GCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCA
TCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCA
TCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAAT
CGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCA
GTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACC
GCAATCTTTACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATA
GACACGCTGAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTTTC
CGCAATGACGCGTGAGCACTTTCAGGCCGTAAATGGGTTCTCAAACTCGT
TCTTTGGCTGGGGCGGCGAGGATGACGACATGTCCAACAGGTTGAAGCAC
GCAAACCTATTCATATCAAGGTATCCGGTCAACATAGCTCGCTACAAGAT
GCTGAAGCATCAGAAGGAAAAGGCCAATCCTAAGCGCTATGAAAACTTAC
AGAATGGCATGAGCAAAATAGAACAGGATGGAATCAACTCGATAAAGTAT
TCTATCTACAGCATCAAACAATTTCCAACTTTCACTTGGTACTTAGCAGA
GCTAAAGAACTCCGAGCGCAAAAGTTAGAAGCTTTCTAGACCAT
BS05458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-RA | 1212 | CG8536-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-RA | 1867 | CG8536-RA | 134..1346 | 16..1228 | 6065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14259715..14260140 | 443..868 | 2130 | 100 | Plus |
2R | 25286936 | 2R | 14259355..14259660 | 140..445 | 1530 | 100 | Plus |
2R | 25286936 | 2R | 14260195..14260415 | 866..1086 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 14260487..14260629 | 1086..1228 | 715 | 100 | Plus |
2R | 25286936 | 2R | 14259163..14259288 | 16..141 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:26:32 has no hits.
BS05458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:27 Download gff for
BS05458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 1..1212 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:25 Download gff for
BS05458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 122..1347 | 7..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:56 Download gff for
BS05458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 135..1346 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:27 Download gff for
BS05458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 122..1347 | 7..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:10 Download gff for
BS05458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 135..1346 | 17..1228 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:10 Download gff for
BS05458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14259164..14259288 | 17..141 | 100 | -> | Plus |
2R | 14259357..14259658 | 142..443 | 100 | -> | Plus |
2R | 14259716..14260139 | 444..867 | 100 | -> | Plus |
2R | 14260197..14260415 | 868..1086 | 100 | -> | Plus |
2R | 14260488..14260629 | 1087..1228 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:56 Download gff for
BS05458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10146669..10146793 | 17..141 | 100 | -> | Plus |
arm_2R | 10146862..10147163 | 142..443 | 100 | -> | Plus |
arm_2R | 10147221..10147644 | 444..867 | 100 | -> | Plus |
arm_2R | 10147702..10147920 | 868..1086 | 100 | -> | Plus |
arm_2R | 10147993..10148134 | 1087..1228 | 100 | | Plus |
BS05458.pep Sequence
Translation from 16 to 1227
> BS05458.pep
MYLFTKANLIRFLAGAICLLLVLNFVGFRSDGGSATSLSKLSIRRVHKYA
HIYGNASSDGAGGSEASRLPASPLALSKDRERDQELNGGPNSTIRTVIAT
ANFTSIPQDLTRFLLGTKKFLPPRQKSTSALLANCTDPDPRDGGPITPNT
TLESLDVIEAELGPLLRPGGAFEPENCNAQHHVAIVVPFRDRYAHLLLFL
RNIHPFLMKQRIAYRIFIVEQTNGKPFNRAAMMNIGYLEALKLYQWDCFI
FHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNFRLPYRSIFGGVSAMTRE
HFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARYKMLKHQK
EKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAELKNSE
RKS*
BS05458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-PA | 403 | CG8536-PA | 1..403 | 1..403 | 2117 | 100 | Plus |
beta4GalNAcTB-PA | 323 | CG14517-PA | 91..322 | 163..395 | 551 | 45.5 | Plus |
beta4GalT7-PA | 322 | CG11780-PA | 50..283 | 153..385 | 329 | 32 | Plus |