Clone BS05458 Report

Search the DGRC for BS05458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:58
Vector:pDNR-Dual
Associated Gene/Transcriptbeta4GalNAcTA-RA
Protein status:BS05458.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05458.3prime Sequence

883 bp (730 high quality bases) assembled on 2005-12-02

> BS05458.3prime
ATGGTCTAGAAAGCTTCTAACTTTTGCGCTCGGAGTTCTTTAGCTCTGCT
AAGTACCAAGTGAAAGTTGGAAATTGTTTGATGCTGTAGATAGAATACTT
TATCGAGTTGATTCCATCCTGTTCTATTTTGCTCATGCCATTCTGTAAGT
TTTCATAGCGCTTAGGATTGGCCTTTTCCTTCTGATGCTTCAGCATCTTG
TAGCGAGCTATGTTGACCGGATACCTTGATATGAATAGGTTTGCGTGCTT
CAACCTGTTGGACATGTCGTCATCCTCGCCGCCCCAGCCAAAGAACGAGT
TTGAGAACCCATTTACGGCCTGAAAGTGCTCACGCGTCATTGCGGAAACA
CCTCCAAATATTGATCGATAAGGCAACCTGAAGTTCAGCGTGTCTATAGC
CACTGACATGTGTCGCGGCTGACGTGGACAGTTGTAAAGATTGCGGTCGT
CCAAAGGCAGAAGATCGACATCGTGGAATATAAAACAATCCCACTGGTAC
AGCTTTAAGGCCTCCAAATAACCAATGTTCATCATGGCAGCCCGATTAAA
GGGCTTCCCGTTGGTCTGCTCTACAATGAAAATGCGATAGGCGATGCGCT
GCTTCATCAGAAATGGGTGGATGTTGCGCAGGAAAAGTAATAGATGGGCG
TATCGATCGCGGAAGGGCACAACAATAGCCACGTGATGCTGGGCATTGCA
GTTTTCANGCTCGAAGGCGCCACCAGGGCGCAAAAGAGGTCCAAGCTCCG
CCTCAATAACGTCCAGTGACTCCAGTGTCGTGTTGGGCGTGATGGGTCCA
CATCACGGGGATCGGGATCAGTGCAGTTGGCAAGGAGGGCGGATGTGGAT
TTCTGTCGCGGGGGCAAAAATTCTTTGTGCCAG

BS05458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8536-PA 1212 beta4GalNAcTA-RA 428..1212 801..17 3906 99.8 Minus
CG8536-PA 1212 beta4GalNAcTA-RA 356..427 872..801 360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1867 CG8536-RA 480..1346 881..17 4274 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14259716..14260140 801..377 2114 99.8 Minus
2R 25286936 2R 14260195..14260415 379..159 1105 100 Minus
2R 25286936 2R 14260487..14260629 159..17 715 100 Minus
2R 25286936 2R 14259587..14259658 872..801 360 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:10:23 has no hits.

BS05458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:56 Download gff for BS05458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 343..1212 17..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:39 Download gff for BS05458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 343..1212 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:01:02 Download gff for BS05458.3prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 477..1349 12..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:32 Download gff for BS05458.3prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 477..1349 12..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:32 Download gff for BS05458.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14259574..14259658 802..883 96 -> Minus
2R 14259716..14260139 378..801 99 -> Minus
2R 14260197..14260415 159..377 100 -> Minus
2R 14260488..14260632 12..158 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:01:02 Download gff for BS05458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10147079..10147163 802..883 96 -> Minus
arm_2R 10147221..10147644 378..801 99 -> Minus
arm_2R 10147702..10147920 159..377 100 -> Minus
arm_2R 10147993..10148137 12..158 97   Minus

BS05458.5prime Sequence

888 bp (749 high quality bases) assembled on 2005-12-02

> BS05458.5prime
GAAGTTATCAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCT
TCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTC
CGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCG
CGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCG
GAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAA
GACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAG
AACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGC
GCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACA
TCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACC
CATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGC
TTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAAT
GCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCA
TCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCA
TCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAAT
CGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCA
GTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACC
GCAATCTTTACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATA
GACACGCTGAACTTCAGGTTGCCTTATCGATCAATATT

BS05458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8536-PA 1212 beta4GalNAcTA-RA 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1867 CG8536-RA 134..1006 16..888 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14259715..14260140 443..868 2130 100 Plus
2R 25286936 2R 14259355..14259660 140..445 1530 100 Plus
2R 25286936 2R 14259163..14259288 16..141 630 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:13:03 has no hits.

BS05458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:11:57 Download gff for BS05458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:41 Download gff for BS05458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:48:40 Download gff for BS05458.5prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 124..1006 7..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:02 Download gff for BS05458.5prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 124..1006 7..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:02 Download gff for BS05458.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14259153..14259288 7..141 97 -> Plus
2R 14259357..14259658 142..443 100 -> Plus
2R 14259716..14260139 444..867 100 -> Plus
2R 14260197..14260217 868..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:48:40 Download gff for BS05458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10146658..10146793 7..141 97 -> Plus
arm_2R 10146862..10147163 142..443 100 -> Plus
arm_2R 10147221..10147644 444..867 100 -> Plus
arm_2R 10147702..10147722 868..888 100   Plus

BS05458.complete Sequence

1244 bp (1244 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635123

> BS05458.complete
GAAGTTATCAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCT
TCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTC
CGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCG
CGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCG
GAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAA
GACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAG
AACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGC
GCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACA
TCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACC
CATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGC
TTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAAT
GCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCA
TCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCA
TCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAAT
CGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCA
GTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACC
GCAATCTTTACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATA
GACACGCTGAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTTTC
CGCAATGACGCGTGAGCACTTTCAGGCCGTAAATGGGTTCTCAAACTCGT
TCTTTGGCTGGGGCGGCGAGGATGACGACATGTCCAACAGGTTGAAGCAC
GCAAACCTATTCATATCAAGGTATCCGGTCAACATAGCTCGCTACAAGAT
GCTGAAGCATCAGAAGGAAAAGGCCAATCCTAAGCGCTATGAAAACTTAC
AGAATGGCATGAGCAAAATAGAACAGGATGGAATCAACTCGATAAAGTAT
TCTATCTACAGCATCAAACAATTTCCAACTTTCACTTGGTACTTAGCAGA
GCTAAAGAACTCCGAGCGCAAAAGTTAGAAGCTTTCTAGACCAT

BS05458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1212 CG8536-PA 1..1212 17..1228 6060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1867 CG8536-RA 134..1346 16..1228 6065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14259715..14260140 443..868 2130 100 Plus
2R 25286936 2R 14259355..14259660 140..445 1530 100 Plus
2R 25286936 2R 14260195..14260415 866..1086 1105 100 Plus
2R 25286936 2R 14260487..14260629 1086..1228 715 100 Plus
2R 25286936 2R 14259163..14259288 16..141 630 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:26:32 has no hits.

BS05458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:27 Download gff for BS05458.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 1..1212 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:25 Download gff for BS05458.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 122..1347 7..1233 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:56 Download gff for BS05458.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 135..1346 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:27 Download gff for BS05458.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 122..1347 7..1233 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:10 Download gff for BS05458.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 135..1346 17..1228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:10 Download gff for BS05458.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14259164..14259288 17..141 100 -> Plus
2R 14259357..14259658 142..443 100 -> Plus
2R 14259716..14260139 444..867 100 -> Plus
2R 14260197..14260415 868..1086 100 -> Plus
2R 14260488..14260629 1087..1228 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:56 Download gff for BS05458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10146669..10146793 17..141 100 -> Plus
arm_2R 10146862..10147163 142..443 100 -> Plus
arm_2R 10147221..10147644 444..867 100 -> Plus
arm_2R 10147702..10147920 868..1086 100 -> Plus
arm_2R 10147993..10148134 1087..1228 100   Plus

BS05458.pep Sequence

Translation from 16 to 1227

> BS05458.pep
MYLFTKANLIRFLAGAICLLLVLNFVGFRSDGGSATSLSKLSIRRVHKYA
HIYGNASSDGAGGSEASRLPASPLALSKDRERDQELNGGPNSTIRTVIAT
ANFTSIPQDLTRFLLGTKKFLPPRQKSTSALLANCTDPDPRDGGPITPNT
TLESLDVIEAELGPLLRPGGAFEPENCNAQHHVAIVVPFRDRYAHLLLFL
RNIHPFLMKQRIAYRIFIVEQTNGKPFNRAAMMNIGYLEALKLYQWDCFI
FHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNFRLPYRSIFGGVSAMTRE
HFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARYKMLKHQK
EKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAELKNSE
RKS*

BS05458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-PA 403 CG8536-PA 1..403 1..403 2117 100 Plus
beta4GalNAcTB-PA 323 CG14517-PA 91..322 163..395 551 45.5 Plus
beta4GalT7-PA 322 CG11780-PA 50..283 153..385 329 32 Plus