Clone BS05460 Report

Search the DGRC for BS05460

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptdbr-RB
Protein status:BS05460.pep: full length peptide match
Sequenced Size:3056

Clone Sequence Records

BS05460.complete Sequence

3056 bp assembled on 2009-12-07

GenBank Submission: KX795610

> BS05460.complete
GAAGTTATCAGTCGACATGGATGCTCAGTTTGAGCACTTGTGCCGCATTT
GCGCTGCCAACACGAAAAGCAAGACGAATTCCGTGGTTGAAAGTGTGTTT
ATTTTTAAAACACAGGGACTGAAGGATAAAATATCTCGACACCTTTATCT
AAATGTAGCTGAAGAAGATCCTCTGCCAAAAGTGCTCTGCAAATCTTGTT
ACCGCCAAGTAGAGGCCACGGCGTCGCTTTCAAATATAGCAAAACATACT
CAGCTCGTGTTTCGGGACTTTCTCCTTAGTACACTGCCTAAGAATGCGAG
GGAAGCGGCTGCTGCACAACTGAGCGTTCCAGCAACCCAAATCCCACACC
GACACGACGAAGTCCAAGCGGAAATCGATGAATTTCGCCCCATTTTGCTG
ACCCACGTGCCGGAGTCCGGAAACACCGCTTCCAAGCCCCAACCAGCCAA
TTGCCTGGAGCTGGCCCCAAAAACCGGCGAAAACTACTTGGCTGCATCTT
CCTCATCCTCTTCTCTGAGCAAACCCGCTGGATCAGTAAAGAGCTATCTT
AACACTGGGAGACGCAACAGCGTTTTTACAGACACTAGGTATGGATCGGC
CCCACTGTCTATCGCTCAACGAACTATGCAGTGTCTGCCTTCTTTGGTGC
CCCTAAACACAGAGTCATTGGGTAGCAACGCAATGAGAAAGAGCCCAGAC
ACAAAACTATCGCCGAAAGGAGTAATAAACTTCATCCAGACTCATGGGCG
CATCACGGGCAATATACCTGAAGTCCAAGCAGAGGACAATACCGGAAACA
TCAACGTGACAGATAGCAGAAACACAGTTACAGCTTCCGTTCTTATTTCT
TCAAACGTTAGCAATCCAGGAACGAAATCTCAGGACAGTAATTTGTTTCT
GCAGAAAAGTAGAAATCTTAAAAACACATTAAACAACATTAAAGCCATGC
GTACCGGACAGGTATCACTGCTTAAGGGTGCGCAAAATCGAAACCCTATT
GAAGATGTTAGACCACTGGTCACAACTACACTGGTACCCCAATATGGTGG
TGAACCTTCCGTGGAGGAAGCACTGCCAGAGCACATGATCTTTGCGGCGC
CAAAAAAGAAAAGGGAGGATGAAGAACAATTTCTTCAAACGGCTCTGCCA
CAGCTAAAGAAAACTGTGCCAAGTCAATCTAAGACAAAGTCCACAAAACT
CGATTTAACTATATCGGTTGATTCGCATGTTTCACCCCCGTCAACGTCAA
TTTCTAATGTTAAAAGCCTCACTGATGCAATATTCCTGGGAAGCGTTATT
AGGGATCCAGACTTGTTGATGCTTATTCTCAAGGCTCTAAAATGGCCGGT
GACAGCAGAAAACTGTGATGAGCAAATGTCCCGCTTAAAAAGTTCAAAGT
TCGCTGTTATAATGTCAGACACAAACCTTCTTCAAGACACAGATCTCACA
CAACTTTTAGGTCCATATTTGGCCCCAATGCTGCCTGTGGTTCAGCAACA
AGATCAGCATCCACTTTCCTCAGCTATCGGGTCTGCTTCTTCAAACCATT
CATCGCAGGCGACTAAAGATGTACTTAAGCTGGCTGACTTATCTAGTGCA
ATGCCTTATAAACTTCCACCAGAAACGTCGGTTCAATTAGTGCCTTCCAG
TCCCACGGAACAGGAACCGCAGCCTGTGCGTCACAAAAAGGCGGTTAGCG
TGCCAACTGTCAAACGCCATCAACGAAAGATGCGTGCCCTTGATTTACCT
GCTGTTGACAAGACGCGCCGCATAATTTCGTTATCGACTTCAAAGGCAGC
TTATGTCAGCAACGAACTGTCGAATATCAATTCTGTGCTTTTTTCGCAGT
TCGAATCAAATCCGGCCGACGCTATTAATGAAGCGCTTATCTCACTCCTT
AAGCAGCAACAACAAGAAACAAAAGACCAGCGAAAAACTCGTCAGAGTTG
TATTGGCTCTGACAGTGCAGTTAATTTAGAAGACATTGTACTGATCGATC
CCCAACCGCCTCTTGCAGTCGATCCGCATAATGTGAAGTACCTTGAGGAT
GACTACGTCTCTCCGCAGTCCCAGCCCGGATCCCAATACAATTTTAAAAG
GCGCAAAACAGACATTCGGTCATCAGAGCCGTCTGAAGTCGTTGTGCTCG
ATAACAGCGGATCCCCAAATGAAAAGAATTCAAAAGAAGTATTTCCAAGT
ACGAAACAGACTTTATCCAGAGAAACAAAGAAAAGTGCGGTAACTGTTAG
AAAAGAATCTTTGGGTCAGCTAAAGCAGGCACCCACAAGTACCGTCCCGG
AAGACATTTGCGATCCTAAAGCCAGAGCCATTAATGCGAAAGAAAATCCC
GAAGTGTGTGAACCAGTCCCGGACAATGGAGGTAGTGACGATATTGATGA
TAGCAAAGCAGGCTCGGTATCCGTTCGGAAGTCGGAAGTCAAAGCTGCGC
TTGGACAAAAGCTTTTGGAGGCTATTGGACTTTCTCAGTTGGGAGCCGAT
GCAGCGCCTGAAAACTCCCGCGACACTCTTAGAAGTGCGTTAAAGCGCTC
TATAAAACAGGCCCAGGAGCAACAGCTTCAGCTGAAGCGAGGCAATCATG
AAGAACCTGTGAAGCAACTTGCCGATTCCACAACCAAGCTAAGTGCAGCA
GAATCGGCAGATGAGCATAAAAAAGCAATTGCCGAGCGGGAGCTGGCCCT
GCTGAATCGTGGATTTAAAGCAGGAGAAGAAAACACGATTTCCCTAAAAG
ATGATAAGTGGGAGCGAACTGATGTTAGTTCTTCATCATCAAGAAACCGC
CGAGGACGTAAATCAAAGATTGATTCCAACGTCGAGGATTTTGGCGATGA
AGAAAAAAAAGACTCTAGATGGGATGAAGACGATGACTTGCCGTTAAAGG
CAGATACGGAAAAACCTTCAGAACGGAACAGCACCAACGCCCGACCGACC
CGTACTAGCAAAACGTTATCAAAGTATTATAAAGGACCAACTTCTAAATC
ACATCATAGCATGGGTACGCGCTCGACACGACAGCGCTGAAAGCTTTCTA
GACCAT

BS05460.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-RF 3024 CG11371-PF 1..3024 17..3040 15120 100 Plus
dbr-RE 3024 CG11371-PE 1..3024 17..3040 15120 100 Plus
dbr-RD 3024 CG11371-PD 1..3024 17..3040 15120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-RF 4153 CG11371-RF 633..3658 15..3040 15130 100 Plus
dbr-RE 3454 CG11371-RE 243..3268 15..3040 15130 100 Plus
dbr-RD 3789 CG11371-RD 269..3294 15..3040 15130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 68084..70549 286..2751 12330 100 Plus
2L 23513712 2L 70607..70895 2752..3040 1445 100 Plus
2L 23513712 2L 67623..67765 15..157 715 100 Plus
2L 23513712 2L 67892..68023 155..286 660 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:20:56 has no hits.

BS05460.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:39 Download gff for BS05460.complete
Subject Subject Range Query Range Percent Splice Strand
dbr-RB 521..3543 17..3039 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:03 Download gff for BS05460.complete
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 271..3293 17..3039 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:18 Download gff for BS05460.complete
Subject Subject Range Query Range Percent Splice Strand
dbr-RB 521..3543 17..3039 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:29 Download gff for BS05460.complete
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 271..3293 17..3039 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:29 Download gff for BS05460.complete
Subject Subject Range Query Range Percent Splice Strand
2L 67625..67762 17..154 100 -> Plus
2L 67892..68023 155..286 100 -> Plus
2L 68085..70549 287..2751 100 -> Plus
2L 70607..70894 2752..3039 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:03 Download gff for BS05460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 67625..67762 17..154 100 -> Plus
arm_2L 67892..68023 155..286 100 -> Plus
arm_2L 68085..70549 287..2751 100 -> Plus
arm_2L 70607..70894 2752..3039 100   Plus

BS05460.3prime Sequence

860 bp (744 high quality bases) assembled on 2005-12-02

> BS05460.3prime
ATGGTCTAGAAAGCTTTCAGCGCTGTCGTGTCGAGCGCGTACCCATGCTA
TGATGTGATTTAGAAGTTGGTCCTTTATAATACTTTGATAACGTTTTGCT
AGTACGGGTCGGTCGGGCGTTGGTGCTGTTCCGTTCTGAAGGTTTTTCCG
TATCTGCCTTTAACGGCAAGTCATCGTCTTCATCCCATCTAGAGTCTTTT
TTTTCTTCATCGCCAAAATCCTCGACGTTGGAATCAATCTTTGATTTACG
TCCTCGGCGGTTTCTTGATGATGAAGAACTAACATCAGTTCGCTCCCACT
TATCATCTTTTAGGGAAATCGTGTTTTCTTCTCCTGCTTTAAATCCACGA
TTCAGCAGGGCCAGCTCCCGCTCGGCAATTGCTTTTTTATGCTCATCTGC
CGATTCTGCTGCACTTAGCTTGGTTGTGGAATCGGCAAGTTGCTTCACAG
GTTCTTCATGATTGCCTCGCTTCAGCTGAAGCTGTTGCTCCTGGGCCTGT
TTTATAGAGCGCTTTAACGCACTTCTAAGAGTGTCGCGGGAGTTTTCAGG
CGCTGCATCGGCTCCCAACTGAGAAAGTCCAATAGCCTCCAAAAGCTTTT
GTCCAAGCGCAGCTTTGACTTCCGACTTCCGAACGGATACCGAGCCTGCT
TTGCTATCATCAATATCGTCACTACCTCCATTGTCCGGGACTGGTTCACA
CACTTCGGGATTTTCTTTCGCATTAATGGCTCTGGCTTTAGGATCGCAAA
TGTCTTCCGGGACGGTACTTGTGGGTGCCTGCTTTAGCTGACCCAAAGAT
TCTTTTTCTACAGTTACCGCACTTTTCTTTGTTTCTCTGGATAAAGTCTG
TTTCGTACTT

BS05460.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11371-PB 3024 dbr-RB 2235..3024 806..17 3950 100 Minus
CG11371-PB 3024 dbr-RB 2181..2231 860..810 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-RF 4153 CG11371-RF 2815..3658 860..17 4175 99.8 Minus
dbr-RE 3454 CG11371-RE 2425..3268 860..17 4175 99.8 Minus
dbr-RD 3789 CG11371-RD 2451..3294 860..17 4175 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 69995..70549 860..306 2730 99.5 Minus
2L 23513712 2L 70607..70895 305..17 1445 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:55:37 has no hits.

BS05460.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:00 Download gff for BS05460.3prime
Subject Subject Range Query Range Percent Splice Strand
dbr-PB 2181..3024 17..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:44 Download gff for BS05460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11371-PB 2181..3024 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:58:54 Download gff for BS05460.3prime
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 2451..3307 7..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:11:52 Download gff for BS05460.3prime
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 2451..3307 7..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:11:52 Download gff for BS05460.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 69995..70549 306..860 99 -> Minus
2L 70607..70908 7..305 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:58:54 Download gff for BS05460.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 69995..70549 306..860 99 -> Minus
arm_2L 70607..70908 7..305 98   Minus

BS05460.5prime Sequence

880 bp (779 high quality bases) assembled on 2005-12-02

> BS05460.5prime
GAAGTTATCAGTCGACATGGATGCTCAGTTTGAGCACTTGTGCCGCATTT
GCGCTGCCAACACGAAAAGCAAGACGAATTCCGTGGTTGAAAGTGTGTTT
ATTTTTAAAACACAGGGACTGAAGGATAAAATATCTCGACACCTTTATCT
AAATGTAGCTGAAGAAGATCCTCTGCCAAAAGTGCTCTGCAAATCTTGTT
ACCGCCAAGTAGAGGCCACGGCGTCGCTTTCAAATATAGCAAAACATACT
CAGCTCGTGTTTCGGGACTTTCTCCTTAGTACACTGCCTAAGAATGCGAG
GGAAGCGGCTGCTGCACAACTGAGCGTTCCAGCAACCCAAATCCCACACC
GACACGACGAAGTCCAAGCGGAAATCGATGAATTTCGCCCCATTTTGCTG
ACCCACGTGCCGGAGTCCGGAAACACCGCTTCCAAGCCCCAACCAGCCAA
TTGCCTGGAGCTGGCCCCAAAAACCGGCGAAAACTACTTGGCTGCATCTT
CCTCATCCTCTTCTCTGAGCAAACCCGCTGGATCAGTAAAGAGCTATCTT
AACACTGGGAGACGCAACAGCGTTTTTACAGACACTAGGTATGGATCGGC
CCCACTGTCTATCGCTCAACGAACTATGCAGTGTCTGCCTTCTTTGGTGC
CCCTAAACACAGAGTCATTGGGTAGCAACGCAATGAGAAAGAGCCCAGAC
ACAAAACTATCGCCGAAAGGAGTAATAAACTTCATCCAGACTCATGGGCG
CATCACGGGGCATATACCTGAAGTCCAAGCAGAGGACAATACCGGAAACA
TCAACGTGACAGATAGCAGAAACACAGTTACAGCTTCCGTTCTTATTTCT
TCAACGTTAGCAATCCAGGAACGAAATCTC

BS05460.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11371-PB 3024 dbr-RB 1..838 17..854 4140 99.7 Plus
CG11371-PB 3024 dbr-RB 838..865 853..880 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-RF 4153 CG11371-RF 633..1499 15..880 4280 99.7 Plus
dbr-RE 3454 CG11371-RE 243..1109 15..880 4280 99.7 Plus
dbr-RD 3789 CG11371-RD 269..1135 15..880 4280 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 68084..68679 286..880 2900 99.5 Plus
2L 23513712 2L 67623..67765 15..157 715 100 Plus
2L 23513712 2L 67892..68023 155..286 660 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:31:12 has no hits.

BS05460.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:01 Download gff for BS05460.5prime
Subject Subject Range Query Range Percent Splice Strand
dbr-PB 1..865 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:46 Download gff for BS05460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11371-PB 1..865 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:53 Download gff for BS05460.5prime
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 264..1135 8..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:34 Download gff for BS05460.5prime
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 264..1135 8..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:34 Download gff for BS05460.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 67618..67762 8..154 97 -> Plus
2L 67892..68023 155..286 100 -> Plus
2L 68085..68679 287..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:53 Download gff for BS05460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 67618..67762 8..154 97 -> Plus
arm_2L 67892..68023 155..286 100 -> Plus
arm_2L 68085..68679 287..880 99   Plus

BS05460.pep Sequence

Translation from 16 to 3039

> BS05460.pep
MDAQFEHLCRICAANTKSKTNSVVESVFIFKTQGLKDKISRHLYLNVAEE
DPLPKVLCKSCYRQVEATASLSNIAKHTQLVFRDFLLSTLPKNAREAAAA
QLSVPATQIPHRHDEVQAEIDEFRPILLTHVPESGNTASKPQPANCLELA
PKTGENYLAASSSSSSLSKPAGSVKSYLNTGRRNSVFTDTRYGSAPLSIA
QRTMQCLPSLVPLNTESLGSNAMRKSPDTKLSPKGVINFIQTHGRITGNI
PEVQAEDNTGNINVTDSRNTVTASVLISSNVSNPGTKSQDSNLFLQKSRN
LKNTLNNIKAMRTGQVSLLKGAQNRNPIEDVRPLVTTTLVPQYGGEPSVE
EALPEHMIFAAPKKKREDEEQFLQTALPQLKKTVPSQSKTKSTKLDLTIS
VDSHVSPPSTSISNVKSLTDAIFLGSVIRDPDLLMLILKALKWPVTAENC
DEQMSRLKSSKFAVIMSDTNLLQDTDLTQLLGPYLAPMLPVVQQQDQHPL
SSAIGSASSNHSSQATKDVLKLADLSSAMPYKLPPETSVQLVPSSPTEQE
PQPVRHKKAVSVPTVKRHQRKMRALDLPAVDKTRRIISLSTSKAAYVSNE
LSNINSVLFSQFESNPADAINEALISLLKQQQQETKDQRKTRQSCIGSDS
AVNLEDIVLIDPQPPLAVDPHNVKYLEDDYVSPQSQPGSQYNFKRRKTDI
RSSEPSEVVVLDNSGSPNEKNSKEVFPSTKQTLSRETKKSAVTVRKESLG
QLKQAPTSTVPEDICDPKARAINAKENPEVCEPVPDNGGSDDIDDSKAGS
VSVRKSEVKAALGQKLLEAIGLSQLGADAAPENSRDTLRSALKRSIKQAQ
EQQLQLKRGNHEEPVKQLADSTTKLSAAESADEHKKAIAERELALLNRGF
KAGEENTISLKDDKWERTDVSSSSSRNRRGRKSKIDSNVEDFGDEEKKDS
RWDEDDDLPLKADTEKPSERNSTNARPTRTSKTLSKYYKGPTSKSHHSMG
TRSTRQR*

BS05460.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-PF 1007 CG11371-PF 1..1007 1..1007 5078 100 Plus
dbr-PE 1007 CG11371-PE 1..1007 1..1007 5078 100 Plus
dbr-PD 1007 CG11371-PD 1..1007 1..1007 5078 100 Plus
dbr-PC 1007 CG11371-PC 1..1007 1..1007 5078 100 Plus
dbr-PB 1007 CG11371-PB 1..1007 1..1007 5078 100 Plus