Clone Sequence Records
BS05461.3prime Sequence
886 bp (725 high quality bases) assembled on 2005-12-02
> BS05461.3prime
ATGGTCTAGAAAGCTTCTAGACGGCGAGCAGTTTTTCACCGCCCTCGACG
TCGTACTGCAGGCACAGGCGGTCGAACTCCGCTGACTTCTTGTCTAGATC
GGTGACAAAGTCGCTCTTGGGATAGAACTGCCTCAGCTGTTCTAGATTCC
GGGTGATCGCCTCTGTCGGCTTGCCCGTAAGATGGGCATGAACCATCAGA
TTGATCAGCGTGTCGTAGTCGTTGTGCTTCTTCAGCAGAGATTCACGCAG
AACGGAATCTGCCTCCTCGTACCGCTCCAGACCCAAATGAACGACCGCTT
GGCCGTTCAGCAGCGCCGGAGTTGGCTTGAACTTTTCACAGAACTCCTGG
TAGATGTGAAAGGCGTCCTGCATCTGTTCCGTTCCCTGGGCGAGGGCCAC
CCACGCCTGAGCGAGCTGAGTCAGCGTAGCATCGTCGCTGATCTCCTGCA
TCTTGGCCACCAGCTGCTTGGCCAGGTCCACGCGCTGCAGACGCAGCAGG
CACTGGACCGACAGAGCCATCGACTCCAGATTGGTGGAGCCGTGCAGGAT
CTTCAGTGCGTTCTCGAACTGCCCGTCGTGGCAGTAGACGATGGCGGTTG
CAAGGTGCCAGATGTTGGTCTCATCCTCCTCTCCGGCCACCTTGTCCGTG
AGTTTCTCCAGCAGCTCCTCCGTCCTCGAAGGCTGCTCAAAGGCTTCGTG
CACCAGACGCAAGGCCTGCAGTGGCGTGGAGTTTCCCTCCTTGATGTCCG
AGGCCACGATGCGCCCGGAATCGATGGGCAAGTAAGATAGGTACATGTAG
GACAGGAGCTCCGGACCCGCGGTACCCTGCTCCGGCAGCACGAAGTTGAT
CGAGCCCATGAAGTTACCGATGTAGTACTCGTTGCG
BS05461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9543-PA | 921 | CG9543-RA | 52..921 | 886..17 | 4325 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-RA | 1105 | CG9543-RA | 153..1023 | 886..16 | 4340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6489242..6490112 | 886..16 | 4340 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:11:13 has no hits.
BS05461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:02 Download gff for
BS05461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9543-PA | 52..921 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:47 Download gff for
BS05461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9543-PA | 52..921 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:04 Download gff for
BS05461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 153..1023 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:25 Download gff for
BS05461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 153..1023 | 16..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:25 Download gff for
BS05461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6489242..6490112 | 16..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:04 Download gff for
BS05461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6489242..6490112 | 16..886 | 99 | | Minus |
BS05461.5prime Sequence
822 bp (758 high quality bases) assembled on 2005-12-02
> BS05461.5prime
GAAGTTATCAGTCGACATGAGCCGACAGCAGAATGAGGAGGACACCAACT
CGGTGCTATTCGATGCCCGCAACGAGTACTACATCGGTAACTTCATGGGC
TCGATCAACTTCGTGCTGCCGGAGCAGGGTACCGCGGGTCCGGAGCTCCT
GTCCTACATGTACCTATCTTACTTGGCCATCGATTCCGGGCGCATCGTGG
CCTCGGACATCAAGGAGGGAAACTCCACGCCACTGCAGGCCTTGCGTCTG
GTGCACGAAGCCTTTGAGCAGCCTTCGAGGACGGAGGAGCTGCTGGAGAA
ACTCACGGACAAGGTGGCCGGAGAGGAGGATGAGACCAACATCTGGCACC
TTGCAACCGCCATCGTCTACTGCCACGACGGGCAGTTCGAGAACGCACTG
AAGATCCTGCACGGCTCCACCAATCTGGAGTCGATGGCTCTGTCGGTCCA
GTGCCTGCTGCGTCTGCAGCGCGTGGACCTGGCCAAGCAGCTGGTGGCCA
AGATGCAGGAGATCAGCGACGATGCTACGCTGACTCAGCTCGCTCAGGCG
TGGGTGGCCCTCGCCCAGGGAACGGAACAGATGCAGGACGCCTTTCACAT
CTACCAGGAGTTCTGTGAAAAGTTCAAGCCAACTCCGGCGCTGCTGAACG
GCCAAGCGGTCGTTCATTTGGGTCTGGAGCGGTACGAGGAGGCAGATTCC
GTTCTGCGTGAATCTCTGCTGAAGAAGCACAACGACTACGACACGCTGAT
CAATCTGATGGTTCATGCCCATCTTACGGGCAAGCCGACAGAGGCGATCA
CCCGGGATCTAGAACAGCTGAA
BS05461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9543-PA | 921 | CG9543-RA | 1..805 | 17..821 | 4000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-RA | 1105 | CG9543-RA | 102..906 | 17..821 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6489191..6489995 | 17..821 | 4010 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:51:40 has no hits.
BS05461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:03 Download gff for
BS05461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9543-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:49 Download gff for
BS05461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9543-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:23:05 Download gff for
BS05461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 102..906 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:44:33 Download gff for
BS05461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 102..906 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:44:33 Download gff for
BS05461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6489191..6489995 | 17..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:23:05 Download gff for
BS05461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6489191..6489995 | 17..822 | 99 | | Plus |
BS05461.complete Sequence
953 bp (953 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635124
> BS05461.complete
GAAGTTATCAGTCGACATGAGCCGACAGCAGAATGAGGAGGACACCAACT
CGGTGCTATTCGATGCCCGCAACGAGTACTACATCGGTAACTTCATGGGC
TCGATCAACTTCGTGCTGCCGGAGCAGGGTACCGCGGGTCCGGAGCTCCT
GTCCTACATGTACCTATCTTACTTGGCCATCGATTCCGGGCGCATCGTGG
CCTCGGACATCAAGGAGGGAAACTCCACGCCACTGCAGGCCTTGCGTCTG
GTGCACGAAGCCTTTGAGCAGCCTTCGAGGACGGAGGAGCTGCTGGAGAA
ACTCACGGACAAGGTGGCCGGAGAGGAGGATGAGACCAACATCTGGCACC
TTGCAACCGCCATCGTCTACTGCCACGACGGGCAGTTCGAGAACGCACTG
AAGATCCTGCACGGCTCCACCAATCTGGAGTCGATGGCTCTGTCGGTCCA
GTGCCTGCTGCGTCTGCAGCGCGTGGACCTGGCCAAGCAGCTGGTGGCCA
AGATGCAGGAGATCAGCGACGATGCTACGCTGACTCAGCTCGCTCAGGCG
TGGGTGGCCCTCGCCCAGGGAACGGAACAGATGCAGGACGCCTTTCACAT
CTACCAGGAGTTCTGTGAAAAGTTCAAGCCAACTCCGGCGCTGCTGAACG
GCCAAGCGGTCGTTCATTTGGGTCTGGAGCGGTACGAGGAGGCAGATTCC
GTTCTGCGTGAATCTCTGCTGAAGAAGCACAACGACTACGACACGCTGAT
CAATCTGATGGTTCATGCCCATCTTACGGGCAAGCCGACAGAGGCGATCA
CCCGGAATCTAGAACAGCTGAGGCAGTTCTATCCCAAGAGCGACTTTGTC
ACCGATCTAGACAAGAAGTCAGCGGAGTTCGACCGCCTGTGCCTGCAGTA
CGACGTCGAGGGCGGTGAAAAACTGCTCGCCGTCTAGAAGCTTTCTAGAC
CAT
BS05461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-RA | 921 | CG9543-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-RA | 1105 | CG9543-RA | 102..1023 | 17..938 | 4610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6489191..6490112 | 17..938 | 4610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:57:17 has no hits.
BS05461.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:04 Download gff for
BS05461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 100..1021 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:30 Download gff for
BS05461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 102..1022 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:44 Download gff for
BS05461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 102..1022 | 17..937 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:44 Download gff for
BS05461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6489191..6490111 | 17..937 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:30 Download gff for
BS05461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6489191..6490111 | 17..937 | 100 | | Plus |
BS05461.pep Sequence
Translation from 16 to 936
> BS05461.pep
MSRQQNEEDTNSVLFDARNEYYIGNFMGSINFVLPEQGTAGPELLSYMYL
SYLAIDSGRIVASDIKEGNSTPLQALRLVHEAFEQPSRTEELLEKLTDKV
AGEEDETNIWHLATAIVYCHDGQFENALKILHGSTNLESMALSVQCLLRL
QRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFHIYQEFC
EKFKPTPALLNGQAVVHLGLERYEEADSVLRESLLKKHNDYDTLINLMVH
AHLTGKPTEAITRNLEQLRQFYPKSDFVTDLDKKSAEFDRLCLQYDVEGG
EKLLAV*
BS05461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-PA | 306 | CG9543-PA | 1..306 | 1..306 | 1567 | 100 | Plus |
